Definition | Haemophilus influenzae R2866, complete genome. |
---|---|
Accession | CP002277 |
Length | 1,932,306 |
Legend
Hits against Virus and prophage DB | |
Hits against Bacterial DB or GenBank file |
Region 1, total : 40 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 523442..523453 | attL ATAGAGATAAAA | N/A | Click |
2 | 523704..523772 | attL ATTGGTGTTTAAATGGTGCCCGAAGCCAGACTTGAACTGGCACGCCTCGAAAGGCGAGGGATTTTAAAT | N/A | Click |
3 | complement(523932..524945) | PHAGE_Haemop_HP2: integrase; R2866_0516; phage(gi17981816) | 0.0 | Click |
4 | complement(524945..525709) | PHAGE_Haemop_HP2: hypothetical protein HP2p02; R2866_0517; phage(gi17981817) | 5e-144 | Click |
5 | complement(525719..525901) | Conserved hypothetical protein; R2866_0518 | N/A | Click |
6 | complement(525901..526476) | PHAGE_Haemop_HP2: cI repressor; R2866_0519; phage(gi17981818) | 4e-109 | Click |
7 | 526595..526807 | PHAGE_Haemop_HP2: orf2(S)cox; R2866_0520; phage(gi17981819) | 5e-33 | Click |
8 | 526943..527446 | PHAGE_Haemop_HP2: hypothetical protein HP2p05; R2866_0521; phage(gi17981820) | 6e-93 | Click |
9 | 527465..527833 | PHAGE_Haemop_HP2: hypothetical protein HP2p06; R2866_0522; phage(gi17981821) | 2e-69 | Click |
10 | 527833..528018 | PHAGE_Haemop_HP2: hypothetical protein HP2p07; R2866_0523; phage(gi17981822) | 5e-33 | Click |
11 | 528030..528311 | PHAGE_Haemop_HP2: hypothetical protein HP2p08; R2866_0524; phage(gi17981823) | 2e-48 | Click |
12 | 528362..528622 | PHAGE_Haemop_HP2: hypothetical protein HP2p09; R2866_0525; phage(gi17981824) | 1e-46 | Click |
13 | 528610..530952 | PHAGE_Haemop_HP2: rep; R2866_0526; phage(gi17981825) | 0.0 | Click |
14 | 530964..531275 | PHAGE_Haemop_HP2: hypothetical protein HP2p11; R2866_0527; phage(gi17981826) | 1e-53 | Click |
15 | 531285..531803 | PHAGE_Haemop_HP2: dam; R2866_0528; phage(gi17981827) | 5e-102 | Click |
16 | 531857..532075 | PHAGE_Haemop_HP2: hypothetical protein HP2p13; R2866_0529; phage(gi19289355) | 1e-37 | Click |
17 | 532104..532505 | PHAGE_Haemop_HP2: hypothetical protein HP2p14; R2866_0530; phage(gi17981828) | 1e-72 | Click |
18 | complement(532871..533908) | PHAGE_Haemop_HP2: orf15; R2866_0531; phage(gi17981829) | 0.0 | Click |
19 | complement(533898..535721) | PHAGE_Haemop_HP2: terminase; R2866_0532; phage(gi17981830) | 0.0 | Click |
20 | 535925..536818 | PHAGE_Haemop_HP2: scaffold; R2866_0533; phage(gi17981831) | 8e-171 | Click |
21 | 536821..537831 | PHAGE_Haemop_HP2: capsid; R2866_0534; phage(gi17981832) | 0.0 | Click |
22 | 537845..538690 | PHAGE_Haemop_HP2: packaging protein; R2866_0535; phage(gi17981833) | 3e-158 | Click |
23 | 538683..539135 | PHAGE_Haemop_HP2: packaging protein; R2866_0536; phage(gi17981834) | 4e-81 | Click |
24 | 539123..539608 | PHAGE_Haemop_HP2: orf21; R2866_0537; phage(gi17981835) | 1e-91 | Click |
25 | 539598..540293 | PHAGE_Haemop_HP2: orf22; R2866_0538; phage(gi17981836) | 2e-131 | Click |
26 | 540565..541695 | PHAGE_Haemop_HP2: tail sheath; R2866_0539; phage(gi17981837) | 0.0 | Click |
27 | 541699..542151 | PHAGE_Haemop_HP2: tail tube; R2866_0540; phage(gi17981838) | 9e-78 | Click |
28 | 542238..542474 | PHAGE_Haemop_HP2: hol; R2866_0541; phage(gi17981839) | 2e-38 | Click |
29 | 542467..543027 | PHAGE_Haemop_HP2: lys; R2866_0542; phage(gi17981840) | 1e-101 | Click |
30 | 543012..543359 | PHAGE_Haemop_HP2: orf25; R2866_0543; phage(gi17981841) | 4e-61 | Click |
31 | 543552..543860 | PHAGE_Haemop_HP2: orf26; R2866_0544; phage(gi17981842) | 7e-51 | Click |
32 | 544049..546178 | PHAGE_Haemop_HP2: orf27; R2866_0545; phage(gi17981843) | 0.0 | Click |
33 | 546182..546517 | PHAGE_Haemop_HP2: orf28; R2866_0546; phage(gi17981844) | 9e-56 | Click |
34 | 546510..547679 | PHAGE_Haemop_HP2: orf29; R2866_0547; phage(gi17981845) | 0.0 | Click |
35 | 547689..548216 | PHAGE_Haemop_HP2: orf30; R2866_0548; phage(gi17981846) | 9e-100 | Click |
36 | 548240..550972 | PHAGE_Haemop_HP2: tail fibers; R2866_0549; phage(gi17981847) | 0.0 | Click |
37 | 550984..551616 | PHAGE_Haemop_HP2: tail collar; R2866_0550; phage(gi17981848) | 4e-116 | Click |
38 | 551617..552396 | PHAGE_Haemop_HP2: orf33; R2866_0551; phage(gi17981849) | 3e-140 | Click |
39 | 552383..552943 | PHAGE_Haemop_HP2: orf34; R2866_0552; phage(gi17981850) | 3e-102 | Click |
40 | 552944..554545 | PHAGE_Haemop_HP2: orf35; R2866_0553; phage(gi17981851) | 0.0 | Click |
41 | complement(555093..555168) | tRNA | N/A | Click |
42 | 555206..555274 | attR ATTGGTGTTTAAATGGTGCCCGAAGCCAGACTTGAACTGGCACGCCTCGAAAGGCGAGGGATTTTAAAT | N/A | Click |
43 | 555599..556375 | PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp31; R2866_0555; phage(gi17313248) | 5e-11 | Click |
44 | complement(556370..557182) | PROPHAGE_Salmon_CT18: phage integrase; R2866_0556; phage(gi16763128) | 2e-38 | Click |
45 | 570597..570608 | attR ATAGAGATAAAA | N/A | Click |
Region 2, total : 31 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 982762..982773 | attL AAATATTGCCAT | N/A | Click |
2 | 982850..983008 | PHAGE_Mannhe_phiMHaA1: integrase; R2866_0968; phage(gi109289985) | 2e-15 | Click |
3 | complement(983080..983283) | Hypothetical protein; R2866_0969 | N/A | Click |
4 | complement(983588..983839) | PHAGE_Escher_TL_2011c: putative antirepressor; R2866_0970; phage(gi418487055) | 3e-19 | Click |
5 | complement(984177..985448) | PHAGE_Amsact_: hypothetical protein AMV156; R2866_0971; phage(gi9964470) | 6e-06 | Click |
6 | 986049..986252 | Hypothetical protein; R2866_0972 | N/A | Click |
7 | complement(986230..986388) | PHAGE_Aggreg_S1249: hypothetical protein; R2866_0973; phage(gi273809595) | 4e-05 | Click |
8 | complement(986716..986937) | Hypothetical protein; R2866_0974 | N/A | Click |
9 | 986952..987122 | Hypothetical protein; R2866_0975 | N/A | Click |
10 | complement(987436..987867) | Hypothetical protein; R2866_0976 | N/A | Click |
11 | complement(987864..988199) | Hypothetical protein; R2866_0977 | N/A | Click |
12 | complement(988202..989281) | Hypothetical protein; R2866_0978 | N/A | Click |
13 | complement(989333..990031) | PHAGE_Haemop_Aaphi23: putative CI protein; R2866_0979; phage(gi31544010) | 8e-114 | Click |
14 | 990142..990330 | PHAGE_Aggreg_S1249: phage protein; R2866_0980; phage(gi273809591) | 6e-05 | Click |
15 | 990379..990819 | PHAGE_Entero_mEp390: hypothetical protein; R2866_0981; phage(gi428782704) | 4e-14 | Click |
16 | 990866..991534 | PHAGE_Aggreg_S1249: uncharacterized phage-encoded protein; R2866_0982; phage(gi273809589) | 2e-59 | Click |
17 | 991531..992229 | PHAGE_Aggreg_S1249: replication protein; R2866_0983; phage(gi273809588) | 2e-64 | Click |
18 | 992226..992846 | PHAGE_Stx2_c_I: P protein; R2866_0984; phage(gi20065922) | 2e-16 | Click |
19 | 992843..993067 | Hypothetical protein; R2866_0985 | N/A | Click |
20 | 993104..993523 | PHAGE_Aggreg_S1249: putative recombination protein NinB; R2866_0986; phage(gi273809585) | 3e-58 | Click |
21 | 994161..994826 | PHAGE_Thalas_BA3: hypothetical protein BA3_0046; R2866_0988; phage(gi160700640) | 4e-36 | Click |
22 | 994857..995228 | Hypothetical protein; R2866_0989 | N/A | Click |
23 | complement(995278..996243) | PHAGE_Entero_4795: hypothetical protein PBV4795_ORF33; R2866_0990; phage(gi157166018) | 2e-94 | Click |
24 | 996601..997242 | PHAGE_Aggreg_S1249: possible bacteriophage antirepressor; R2866_0991; phage(gi273809598) | 4e-35 | Click |
25 | 997584..997940 | PHAGE_Aeromo_phiO18P: putative holin; R2866_0992; phage(gi148727161) | 1e-05 | Click |
26 | 997909..998511 | PHAGE_Aggreg_S1249: putative Lys protein; R2866_0993; phage(gi273809575) | 2e-58 | Click |
27 | 998504..998839 | PHAGE_Aggreg_S1249: putative lytic protein Rz; R2866_0994; phage(gi273809574) | 5e-27 | Click |
28 | 998739..999020 | PHAGE_Aggreg_S1249: putative lytic protein Rz1; R2866_0995; phage(gi273809573) | 3e-28 | Click |
29 | 999059..999571 | PHAGE_Acinet_AP22: putative phage terminase small subunit; R2866_0996; phage(gi388570782) | 8e-23 | Click |
30 | 999558..1000901 | PHAGE_Psychr_pOW20_A: phage terminase large subunit; R2866_0997; phage(gi472339822) | 4e-98 | Click |
31 | 1000903..1002234 | PHAGE_Aggreg_S1249: phage-related protein HI1409; R2866_0998; phage(gi273809569) | 0.0 | Click |
32 | 1003584..1003760 | PHAGE_Aggreg_S1249: hypothetical protein; R2866_1000; phage(gi273809565) | 4e-24 | Click |
33 | 1017992..1018003 | attR AAATATTGCCAT | N/A | Click |
Region 3, total : 16 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | complement(1114375..1115229) | PHAGE_Cafete_BV_PW1: putative bifunctional KDO 8-P synthase/dTDP-6-deoxy-L-hexose 3-O-methyltransferase; R2866_1090; phage(gi310831256) | 2e-48 | Click |
2 | complement(1115244..1116047) | Conserved hypothetical protein; R2866_1091 | N/A | Click |
3 | complement(1116047..1116925) | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; R2866_1092 | N/A | Click |
4 | complement(1116925..1117395) | Hypothetical protein; R2866_1093 | N/A | Click |
5 | complement(1117423..1118508) | PHAGE_Pseudo_73: hypothetical protein ORF037; R2866_1094; phage(gi148912865) | 2e-09 | Click |
6 | complement(1118784..1119443) | PHAGE_Megavi_chiliensis: putative Sel1-like repeat-containing protein; R2866_1095; phage(gi363540607) | 7e-18 | Click |
7 | complement(1119455..1119631) | Hypothetical protein; R2866_1096 | N/A | Click |
8 | complement(1119631..1120077) | PHAGE_Megavi_chiliensis: putative Sel1-like repeat-containing protein; R2866_1097; phage(gi363539854) | 6e-07 | Click |
9 | complement(1120089..1120265) | Hypothetical protein; R2866_1098 | N/A | Click |
10 | complement(1120265..1120924) | PHAGE_Megavi_chiliensis: putative Sel1-like repeat-containing protein; R2866_1099; phage(gi363540607) | 1e-19 | Click |
11 | complement(1120936..1121112) | Hypothetical protein; R2866_1100 | N/A | Click |
12 | complement(1121112..1121558) | PHAGE_Megavi_chiliensis: putative Sel1-like repeat-containing protein; R2866_1101; phage(gi363539854) | 6e-10 | Click |
13 | complement(1121759..1122295) | Conserved hypothetical protein; R2866_1102 | N/A | Click |
14 | complement(1122557..1123264) | PHAGE_Haemop_SuMu: MuF; R2866_1103; phage(gi418489084) | 8e-66 | Click |
15 | complement(1123276..1123647) | PHAGE_Haemop_SuMu: portal protein gp29; R2866_1104; phage(gi418489080) | 4e-50 | Click |
16 | 1123692..1123850 | PHAGE_Haemop_HP1: putative DNA binding protein; R2866_1105; phage(gi9628616) | 1e-19 | Click |
Region 4, total : 44 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1741094..1741107 | attL TGGATTGACTGATA | N/A | Click |
2 | complement(1743856..1744866) | PHAGE_Mannhe_phiMHaA1: capsid portal protein Q; R2866_1700; phage(gi109289937) | 3e-118 | Click |
3 | complement(1744876..1746651) | PHAGE_Mannhe_phiMHaA1: terminase ATPase subunit; R2866_1701; phage(gi109289938) | 0.0 | Click |
4 | 1746816..1747640 | PHAGE_Mannhe_phiMHaA1: capsid scaffolding protein O; R2866_1702; phage(gi109289939) | 5e-74 | Click |
5 | 1747661..1748710 | PHAGE_Mannhe_phiMHaA1: major capsid protein N; R2866_1703; phage(gi109289940) | 3e-91 | Click |
6 | 1748722..1749372 | PHAGE_Mannhe_phiMHaA1: terminase small subunit; R2866_1704; phage(gi109289941) | 4e-47 | Click |
7 | 1749666..1750172 | PHAGE_Mannhe_phiMHaA1: head completion protein L; R2866_1705; phage(gi109289942) | 5e-36 | Click |
8 | 1750172..1750381 | PHAGE_Mannhe_phiMHaA1: tail synthesis protein X; R2866_1706; phage(gi109289943) | 1e-11 | Click |
9 | 1750383..1750604 | PHAGE_Mannhe_phiMHaA1: possible holin; R2866_1707; phage(gi109289944) | 7e-05 | Click |
10 | 1750597..1751115 | PHAGE_Mannhe_phiMHaA1: endolysin; R2866_1708; phage(gi109289945) | 2e-38 | Click |
11 | 1751100..1751450 | PHAGE_Haemop_HP1: hypothetical protein HP1p32; R2866_1709; phage(gi9628631) | 7e-05 | Click |
12 | 1751625..1751840 | PHAGE_Mannhe_phiMHaA1: hypothetical protein MhaA1p11; R2866_1710; phage(gi109289947) | 1e-13 | Click |
13 | 1751837..1752307 | PROPHAGE_Salmon_Ty2: putative phage tail protein; R2866_1711; phage(gi29143748) | 4e-31 | Click |
14 | 1752307..1752765 | PHAGE_Mannhe_phiMHaA1: tail synthesis protein S; R2866_1712; phage(gi109289949) | 9e-27 | Click |
15 | complement(1752743..1753015) | Hypothetical protein; R2866_1713 | N/A | Click |
16 | 1753084..1755819 | PHAGE_Vibrio_vB_VpaM_MAR: tail length tape-measure protein; R2866_1714; phage(gi428782750) | 1e-122 | Click |
17 | 1755920..1756474 | Hypothetical protein; R2866_1715 | N/A | Click |
18 | 1756483..1756911 | Hypothetical protein; R2866_1716 | N/A | Click |
19 | 1757021..1757614 | PHAGE_Mannhe_phiMHaA1: baseplate assembly protein V; R2866_1717; phage(gi109289954) | 1e-62 | Click |
20 | 1757616..1757954 | PHAGE_Mannhe_phiMHaA1: baseplate assembly protein W; R2866_1718; phage(gi109289955) | 5e-21 | Click |
21 | 1757951..1758865 | PHAGE_Mannhe_phiMHaA1: baseplate assembly protein J; R2866_1719; phage(gi109289956) | 1e-97 | Click |
22 | 1758852..1759391 | PHAGE_Mannhe_phiMHaA1: tail formation protein I; R2866_1720; phage(gi109289957) | 2e-51 | Click |
23 | 1759400..1761877 | PHAGE_Mannhe_phiMHaA1: variable tail fiber protein H; R2866_1721; phage(gi109289958) | 3e-41 | Click |
24 | 1761888..1762439 | PHAGE_Haemop_HP2: tail collar; R2866_1722; phage(gi17981848) | 9e-47 | Click |
25 | 1762432..1762911 | PHAGE_Haemop_SuMu: enoyl-CoA hydratase/carnithine racemase-like protein; R2866_1723; phage(gi418489075) | 3e-46 | Click |
26 | 1763056..1764240 | PROPHAGE_Salmon_Ty2: major tail sheath protein; R2866_1724; phage(gi29143758) | 5e-103 | Click |
27 | 1764244..1764750 | PHAGE_Mannhe_phiMHaA1: tail tube protein FII; R2866_1725; phage(gi109289961) | 5e-54 | Click |
28 | 1764834..1765279 | PHAGE_Burkho_KS5: gp17; R2866_1727; phage(gi327198015) | 5e-32 | Click |
29 | 1764834..1765133 | PHAGE_Mannhe_phiMHaA1: tail protein E; R2866_1726; phage(gi109289962) | 2e-12 | Click |
30 | 1765447..1765884 | PHAGE_Mannhe_phiMHaA1: tail protein U; R2866_1728; phage(gi109289964) | 1e-42 | Click |
31 | 1765884..1767077 | PHAGE_Mannhe_phiMHaA1: tail protein D; R2866_1729; phage(gi109289965) | 4e-109 | Click |
32 | complement(1767103..1767342) | PHAGE_Mannhe_phiMHaA1: hypothetical protein MhaA1p32; R2866_1730; phage(gi109289967) | 1e-11 | Click |
33 | complement(1767339..1767845) | PHAGE_Mannhe_phiMHaA1: hypothetical protein MhaA1p34; R2866_1731; phage(gi109289969) | 9e-38 | Click |
34 | complement(1767857..1768564) | PHAGE_Mannhe_phiMHaA1: CI repressor; R2866_1732; phage(gi109289970) | 1e-32 | Click |
35 | 1768700..1768939 | PHAGE_Salmon_ST160: Cro; R2866_1733; phage(gi318065926) | 2e-10 | Click |
36 | 1769305..1769595 | Hypothetical protein; R2866_1734 | N/A | Click |
37 | 1769687..1769947 | Hypothetical protein; R2866_1735 | N/A | Click |
38 | 1769962..1770345 | PHAGE_Haemop_HP1: hypothetical protein HP1p09; R2866_1736; phage(gi9628609) | 2e-15 | Click |
39 | 1770349..1770591 | Hypothetical protein; R2866_1737 | N/A | Click |
40 | 1770717..1771025 | Hypothetical protein; R2866_1738 | N/A | Click |
41 | 1771035..1773221 | PHAGE_Mannhe_phiMHaA1: replication protein A; R2866_1739; phage(gi109289978) | 2e-81 | Click |
42 | 1773240..1773431 | Hypothetical protein; R2866_1740 | N/A | Click |
43 | 1773442..1773651 | PHAGE_Haemop_HP1: hypothetical protein HP1p15; R2866_1741; phage(gi9628615) | 4e-30 | Click |
44 | 1773665..1774186 | PHAGE_Haemop_HP1: putative DNA binding protein; R2866_1742; phage(gi9628616) | 2e-69 | Click |
45 | 1774389..1774402 | attR TGGATTGACTGATA | N/A | Click |
46 | 1774425..1775480 | PHAGE_Entero_mEpX2: integrase; R2866_1743; phage(gi428765639) | 2e-58 | Click |