Definition Haemophilus influenzae R2866, complete genome.
Accession CP002277
Length 1,932,306
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 40 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 523442..523453  attL    ATAGAGATAAAA  N/A  Click
2 523704..523772  attL    ATTGGTGTTTAAATGGTGCCCGAAGCCAGACTTGAACTGGCACGCCTCGAAAGGCGAGGGATTTTAAAT  N/A  Click
3 complement(523932..524945)  PHAGE_Haemop_HP2: integrase; R2866_0516; phage(gi17981816)  0.0  Click
4 complement(524945..525709)  PHAGE_Haemop_HP2: hypothetical protein HP2p02; R2866_0517; phage(gi17981817)  5e-144  Click
5 complement(525719..525901)  Conserved hypothetical protein; R2866_0518  N/A  Click
6 complement(525901..526476)  PHAGE_Haemop_HP2: cI repressor; R2866_0519; phage(gi17981818)  4e-109  Click
7 526595..526807  PHAGE_Haemop_HP2: orf2(S)cox; R2866_0520; phage(gi17981819)  5e-33  Click
8 526943..527446  PHAGE_Haemop_HP2: hypothetical protein HP2p05; R2866_0521; phage(gi17981820)  6e-93  Click
9 527465..527833  PHAGE_Haemop_HP2: hypothetical protein HP2p06; R2866_0522; phage(gi17981821)  2e-69  Click
10 527833..528018  PHAGE_Haemop_HP2: hypothetical protein HP2p07; R2866_0523; phage(gi17981822)  5e-33  Click
11 528030..528311  PHAGE_Haemop_HP2: hypothetical protein HP2p08; R2866_0524; phage(gi17981823)  2e-48  Click
12 528362..528622  PHAGE_Haemop_HP2: hypothetical protein HP2p09; R2866_0525; phage(gi17981824)  1e-46  Click
13 528610..530952  PHAGE_Haemop_HP2: rep; R2866_0526; phage(gi17981825)  0.0  Click
14 530964..531275  PHAGE_Haemop_HP2: hypothetical protein HP2p11; R2866_0527; phage(gi17981826)  1e-53  Click
15 531285..531803  PHAGE_Haemop_HP2: dam; R2866_0528; phage(gi17981827)  5e-102  Click
16 531857..532075  PHAGE_Haemop_HP2: hypothetical protein HP2p13; R2866_0529; phage(gi19289355)  1e-37  Click
17 532104..532505  PHAGE_Haemop_HP2: hypothetical protein HP2p14; R2866_0530; phage(gi17981828)  1e-72  Click
18 complement(532871..533908)  PHAGE_Haemop_HP2: orf15; R2866_0531; phage(gi17981829)  0.0  Click
19 complement(533898..535721)  PHAGE_Haemop_HP2: terminase; R2866_0532; phage(gi17981830)  0.0  Click
20 535925..536818  PHAGE_Haemop_HP2: scaffold; R2866_0533; phage(gi17981831)  8e-171  Click
21 536821..537831  PHAGE_Haemop_HP2: capsid; R2866_0534; phage(gi17981832)  0.0  Click
22 537845..538690  PHAGE_Haemop_HP2: packaging protein; R2866_0535; phage(gi17981833)  3e-158  Click
23 538683..539135  PHAGE_Haemop_HP2: packaging protein; R2866_0536; phage(gi17981834)  4e-81  Click
24 539123..539608  PHAGE_Haemop_HP2: orf21; R2866_0537; phage(gi17981835)  1e-91  Click
25 539598..540293  PHAGE_Haemop_HP2: orf22; R2866_0538; phage(gi17981836)  2e-131  Click
26 540565..541695  PHAGE_Haemop_HP2: tail sheath; R2866_0539; phage(gi17981837)  0.0  Click
27 541699..542151  PHAGE_Haemop_HP2: tail tube; R2866_0540; phage(gi17981838)  9e-78  Click
28 542238..542474  PHAGE_Haemop_HP2: hol; R2866_0541; phage(gi17981839)  2e-38  Click
29 542467..543027  PHAGE_Haemop_HP2: lys; R2866_0542; phage(gi17981840)  1e-101  Click
30 543012..543359  PHAGE_Haemop_HP2: orf25; R2866_0543; phage(gi17981841)  4e-61  Click
31 543552..543860  PHAGE_Haemop_HP2: orf26; R2866_0544; phage(gi17981842)  7e-51  Click
32 544049..546178  PHAGE_Haemop_HP2: orf27; R2866_0545; phage(gi17981843)  0.0  Click
33 546182..546517  PHAGE_Haemop_HP2: orf28; R2866_0546; phage(gi17981844)  9e-56  Click
34 546510..547679  PHAGE_Haemop_HP2: orf29; R2866_0547; phage(gi17981845)  0.0  Click
35 547689..548216  PHAGE_Haemop_HP2: orf30; R2866_0548; phage(gi17981846)  9e-100  Click
36 548240..550972  PHAGE_Haemop_HP2: tail fibers; R2866_0549; phage(gi17981847)  0.0  Click
37 550984..551616  PHAGE_Haemop_HP2: tail collar; R2866_0550; phage(gi17981848)  4e-116  Click
38 551617..552396  PHAGE_Haemop_HP2: orf33; R2866_0551; phage(gi17981849)  3e-140  Click
39 552383..552943  PHAGE_Haemop_HP2: orf34; R2866_0552; phage(gi17981850)  3e-102  Click
40 552944..554545  PHAGE_Haemop_HP2: orf35; R2866_0553; phage(gi17981851)  0.0  Click
41 complement(555093..555168)  tRNA  N/A  Click
42 555206..555274  attR    ATTGGTGTTTAAATGGTGCCCGAAGCCAGACTTGAACTGGCACGCCTCGAAAGGCGAGGGATTTTAAAT  N/A  Click
43 555599..556375  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp31; R2866_0555; phage(gi17313248)  5e-11  Click
44 complement(556370..557182)  PROPHAGE_Salmon_CT18: phage integrase; R2866_0556; phage(gi16763128)  2e-38  Click
45 570597..570608  attR    ATAGAGATAAAA  N/A  Click
Region 2, total : 31 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 982762..982773  attL    AAATATTGCCAT  N/A  Click
2 982850..983008  PHAGE_Mannhe_phiMHaA1: integrase; R2866_0968; phage(gi109289985)  2e-15  Click
3 complement(983080..983283)  Hypothetical protein; R2866_0969  N/A  Click
4 complement(983588..983839)  PHAGE_Escher_TL_2011c: putative antirepressor; R2866_0970; phage(gi418487055)  3e-19  Click
5 complement(984177..985448)  PHAGE_Amsact_: hypothetical protein AMV156; R2866_0971; phage(gi9964470)  6e-06  Click
6 986049..986252  Hypothetical protein; R2866_0972  N/A  Click
7 complement(986230..986388)  PHAGE_Aggreg_S1249: hypothetical protein; R2866_0973; phage(gi273809595)  4e-05  Click
8 complement(986716..986937)  Hypothetical protein; R2866_0974  N/A  Click
9 986952..987122  Hypothetical protein; R2866_0975  N/A  Click
10 complement(987436..987867)  Hypothetical protein; R2866_0976  N/A  Click
11 complement(987864..988199)  Hypothetical protein; R2866_0977  N/A  Click
12 complement(988202..989281)  Hypothetical protein; R2866_0978  N/A  Click
13 complement(989333..990031)  PHAGE_Haemop_Aaphi23: putative CI protein; R2866_0979; phage(gi31544010)  8e-114  Click
14 990142..990330  PHAGE_Aggreg_S1249: phage protein; R2866_0980; phage(gi273809591)  6e-05  Click
15 990379..990819  PHAGE_Entero_mEp390: hypothetical protein; R2866_0981; phage(gi428782704)  4e-14  Click
16 990866..991534  PHAGE_Aggreg_S1249: uncharacterized phage-encoded protein; R2866_0982; phage(gi273809589)  2e-59  Click
17 991531..992229  PHAGE_Aggreg_S1249: replication protein; R2866_0983; phage(gi273809588)  2e-64  Click
18 992226..992846  PHAGE_Stx2_c_I: P protein; R2866_0984; phage(gi20065922)  2e-16  Click
19 992843..993067  Hypothetical protein; R2866_0985  N/A  Click
20 993104..993523  PHAGE_Aggreg_S1249: putative recombination protein NinB; R2866_0986; phage(gi273809585)  3e-58  Click
21 994161..994826  PHAGE_Thalas_BA3: hypothetical protein BA3_0046; R2866_0988; phage(gi160700640)  4e-36  Click
22 994857..995228  Hypothetical protein; R2866_0989  N/A  Click
23 complement(995278..996243)  PHAGE_Entero_4795: hypothetical protein PBV4795_ORF33; R2866_0990; phage(gi157166018)  2e-94  Click
24 996601..997242  PHAGE_Aggreg_S1249: possible bacteriophage antirepressor; R2866_0991; phage(gi273809598)  4e-35  Click
25 997584..997940  PHAGE_Aeromo_phiO18P: putative holin; R2866_0992; phage(gi148727161)  1e-05  Click
26 997909..998511  PHAGE_Aggreg_S1249: putative Lys protein; R2866_0993; phage(gi273809575)  2e-58  Click
27 998504..998839  PHAGE_Aggreg_S1249: putative lytic protein Rz; R2866_0994; phage(gi273809574)  5e-27  Click
28 998739..999020  PHAGE_Aggreg_S1249: putative lytic protein Rz1; R2866_0995; phage(gi273809573)  3e-28  Click
29 999059..999571  PHAGE_Acinet_AP22: putative phage terminase small subunit; R2866_0996; phage(gi388570782)  8e-23  Click
30 999558..1000901  PHAGE_Psychr_pOW20_A: phage terminase large subunit; R2866_0997; phage(gi472339822)  4e-98  Click
31 1000903..1002234  PHAGE_Aggreg_S1249: phage-related protein HI1409; R2866_0998; phage(gi273809569)  0.0  Click
32 1003584..1003760  PHAGE_Aggreg_S1249: hypothetical protein; R2866_1000; phage(gi273809565)  4e-24  Click
33 1017992..1018003  attR    AAATATTGCCAT  N/A  Click
Region 3, total : 16 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(1114375..1115229)  PHAGE_Cafete_BV_PW1: putative bifunctional KDO 8-P synthase/dTDP-6-deoxy-L-hexose 3-O-methyltransferase; R2866_1090; phage(gi310831256)  2e-48  Click
2 complement(1115244..1116047)  Conserved hypothetical protein; R2866_1091  N/A  Click
3 complement(1116047..1116925)  N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; R2866_1092  N/A  Click
4 complement(1116925..1117395)  Hypothetical protein; R2866_1093  N/A  Click
5 complement(1117423..1118508)  PHAGE_Pseudo_73: hypothetical protein ORF037; R2866_1094; phage(gi148912865)  2e-09  Click
6 complement(1118784..1119443)  PHAGE_Megavi_chiliensis: putative Sel1-like repeat-containing protein; R2866_1095; phage(gi363540607)  7e-18  Click
7 complement(1119455..1119631)  Hypothetical protein; R2866_1096  N/A  Click
8 complement(1119631..1120077)  PHAGE_Megavi_chiliensis: putative Sel1-like repeat-containing protein; R2866_1097; phage(gi363539854)  6e-07  Click
9 complement(1120089..1120265)  Hypothetical protein; R2866_1098  N/A  Click
10 complement(1120265..1120924)  PHAGE_Megavi_chiliensis: putative Sel1-like repeat-containing protein; R2866_1099; phage(gi363540607)  1e-19  Click
11 complement(1120936..1121112)  Hypothetical protein; R2866_1100  N/A  Click
12 complement(1121112..1121558)  PHAGE_Megavi_chiliensis: putative Sel1-like repeat-containing protein; R2866_1101; phage(gi363539854)  6e-10  Click
13 complement(1121759..1122295)  Conserved hypothetical protein; R2866_1102  N/A  Click
14 complement(1122557..1123264)  PHAGE_Haemop_SuMu: MuF; R2866_1103; phage(gi418489084)  8e-66  Click
15 complement(1123276..1123647)  PHAGE_Haemop_SuMu: portal protein gp29; R2866_1104; phage(gi418489080)  4e-50  Click
16 1123692..1123850  PHAGE_Haemop_HP1: putative DNA binding protein; R2866_1105; phage(gi9628616)  1e-19  Click
Region 4, total : 44 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1741094..1741107  attL    TGGATTGACTGATA  N/A  Click
2 complement(1743856..1744866)  PHAGE_Mannhe_phiMHaA1: capsid portal protein Q; R2866_1700; phage(gi109289937)  3e-118  Click
3 complement(1744876..1746651)  PHAGE_Mannhe_phiMHaA1: terminase ATPase subunit; R2866_1701; phage(gi109289938)  0.0  Click
4 1746816..1747640  PHAGE_Mannhe_phiMHaA1: capsid scaffolding protein O; R2866_1702; phage(gi109289939)  5e-74  Click
5 1747661..1748710  PHAGE_Mannhe_phiMHaA1: major capsid protein N; R2866_1703; phage(gi109289940)  3e-91  Click
6 1748722..1749372  PHAGE_Mannhe_phiMHaA1: terminase small subunit; R2866_1704; phage(gi109289941)  4e-47  Click
7 1749666..1750172  PHAGE_Mannhe_phiMHaA1: head completion protein L; R2866_1705; phage(gi109289942)  5e-36  Click
8 1750172..1750381  PHAGE_Mannhe_phiMHaA1: tail synthesis protein X; R2866_1706; phage(gi109289943)  1e-11  Click
9 1750383..1750604  PHAGE_Mannhe_phiMHaA1: possible holin; R2866_1707; phage(gi109289944)  7e-05  Click
10 1750597..1751115  PHAGE_Mannhe_phiMHaA1: endolysin; R2866_1708; phage(gi109289945)  2e-38  Click
11 1751100..1751450  PHAGE_Haemop_HP1: hypothetical protein HP1p32; R2866_1709; phage(gi9628631)  7e-05  Click
12 1751625..1751840  PHAGE_Mannhe_phiMHaA1: hypothetical protein MhaA1p11; R2866_1710; phage(gi109289947)  1e-13  Click
13 1751837..1752307  PROPHAGE_Salmon_Ty2: putative phage tail protein; R2866_1711; phage(gi29143748)  4e-31  Click
14 1752307..1752765  PHAGE_Mannhe_phiMHaA1: tail synthesis protein S; R2866_1712; phage(gi109289949)  9e-27  Click
15 complement(1752743..1753015)  Hypothetical protein; R2866_1713  N/A  Click
16 1753084..1755819  PHAGE_Vibrio_vB_VpaM_MAR: tail length tape-measure protein; R2866_1714; phage(gi428782750)  1e-122  Click
17 1755920..1756474  Hypothetical protein; R2866_1715  N/A  Click
18 1756483..1756911  Hypothetical protein; R2866_1716  N/A  Click
19 1757021..1757614  PHAGE_Mannhe_phiMHaA1: baseplate assembly protein V; R2866_1717; phage(gi109289954)  1e-62  Click
20 1757616..1757954  PHAGE_Mannhe_phiMHaA1: baseplate assembly protein W; R2866_1718; phage(gi109289955)  5e-21  Click
21 1757951..1758865  PHAGE_Mannhe_phiMHaA1: baseplate assembly protein J; R2866_1719; phage(gi109289956)  1e-97  Click
22 1758852..1759391  PHAGE_Mannhe_phiMHaA1: tail formation protein I; R2866_1720; phage(gi109289957)  2e-51  Click
23 1759400..1761877  PHAGE_Mannhe_phiMHaA1: variable tail fiber protein H; R2866_1721; phage(gi109289958)  3e-41  Click
24 1761888..1762439  PHAGE_Haemop_HP2: tail collar; R2866_1722; phage(gi17981848)  9e-47  Click
25 1762432..1762911  PHAGE_Haemop_SuMu: enoyl-CoA hydratase/carnithine racemase-like protein; R2866_1723; phage(gi418489075)  3e-46  Click
26 1763056..1764240  PROPHAGE_Salmon_Ty2: major tail sheath protein; R2866_1724; phage(gi29143758)  5e-103  Click
27 1764244..1764750  PHAGE_Mannhe_phiMHaA1: tail tube protein FII; R2866_1725; phage(gi109289961)  5e-54  Click
28 1764834..1765279  PHAGE_Burkho_KS5: gp17; R2866_1727; phage(gi327198015)  5e-32  Click
29 1764834..1765133  PHAGE_Mannhe_phiMHaA1: tail protein E; R2866_1726; phage(gi109289962)  2e-12  Click
30 1765447..1765884  PHAGE_Mannhe_phiMHaA1: tail protein U; R2866_1728; phage(gi109289964)  1e-42  Click
31 1765884..1767077  PHAGE_Mannhe_phiMHaA1: tail protein D; R2866_1729; phage(gi109289965)  4e-109  Click
32 complement(1767103..1767342)  PHAGE_Mannhe_phiMHaA1: hypothetical protein MhaA1p32; R2866_1730; phage(gi109289967)  1e-11  Click
33 complement(1767339..1767845)  PHAGE_Mannhe_phiMHaA1: hypothetical protein MhaA1p34; R2866_1731; phage(gi109289969)  9e-38  Click
34 complement(1767857..1768564)  PHAGE_Mannhe_phiMHaA1: CI repressor; R2866_1732; phage(gi109289970)  1e-32  Click
35 1768700..1768939  PHAGE_Salmon_ST160: Cro; R2866_1733; phage(gi318065926)  2e-10  Click
36 1769305..1769595  Hypothetical protein; R2866_1734  N/A  Click
37 1769687..1769947  Hypothetical protein; R2866_1735  N/A  Click
38 1769962..1770345  PHAGE_Haemop_HP1: hypothetical protein HP1p09; R2866_1736; phage(gi9628609)  2e-15  Click
39 1770349..1770591  Hypothetical protein; R2866_1737  N/A  Click
40 1770717..1771025  Hypothetical protein; R2866_1738  N/A  Click
41 1771035..1773221  PHAGE_Mannhe_phiMHaA1: replication protein A; R2866_1739; phage(gi109289978)  2e-81  Click
42 1773240..1773431  Hypothetical protein; R2866_1740  N/A  Click
43 1773442..1773651  PHAGE_Haemop_HP1: hypothetical protein HP1p15; R2866_1741; phage(gi9628615)  4e-30  Click
44 1773665..1774186  PHAGE_Haemop_HP1: putative DNA binding protein; R2866_1742; phage(gi9628616)  2e-69  Click
45 1774389..1774402  attR    TGGATTGACTGATA  N/A  Click
46 1774425..1775480  PHAGE_Entero_mEpX2: integrase; R2866_1743; phage(gi428765639)  2e-58  Click