Definition Escherichia coli DH1, complete genome.
Accession CP001637
Length 4,630,707
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 16 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1399343..1400278  PHAGE_Burkho_phi1026b: gp58; EcDH1_1293; phage(gi38707948)  1e-15  Click
2 complement(1400462..1400662)  PHAGE_Entero_HK633: hypothetical protein; EcDH1_1294; phage(gi428782548)  3e-34  Click
3 1400682..1400697  attL    GGAATCGAACCTGCAA  N/A  Click
4 complement(1400794..1401099)  PHAGE_Entero_SfV: hypothetical protein SfVp28; EcDH1_1295; phage(gi19549015)  3e-52  Click
5 complement(1401099..1401461)  PHAGE_Entero_SfV: hypothetical protein SfVp29; EcDH1_1296; phage(gi19549016)  5e-67  Click
6 complement(1401452..1401988)  PHAGE_Entero_SfV: hypothetical protein SfVp30; EcDH1_1297; phage(gi19549017)  3e-99  Click
7 complement(1402116..1402940)  PHAGE_Entero_SfV: hypothetical protein SfVp31; EcDH1_1298; phage(gi19549018)  3e-151  Click
8 complement(1403006..1403368)  PHAGE_Entero_SfV: hypothetical protein SfVp32; EcDH1_1299; phage(gi19549019)  6e-63  Click
9 1404097..1404585  PHAGE_Entero_SfV: hypothetical protein SfVp40; EcDH1_1301; phage(gi19549027)  2e-87  Click
10 1404585..1404860  PHAGE_Entero_SfV: DNA adenine methylase; EcDH1_1302; phage(gi19549028)  2e-50  Click
11 1404826..1405428  PHAGE_Entero_SfV: hypothetical protein SfVp21; EcDH1_1303; phage(gi19548989)  2e-51  Click
12 1405455..1405895  PHAGE_Entero_mEp213: tail fiber assembly protein; EcDH1_1304; phage(gi428782612)  2e-26  Click
13 complement(1405867..1406211)  PHAGE_Entero_HK106: tail fiber assembly protein; EcDH1_1305; phage(gi428783304)  4e-47  Click
14 complement(1406510..1407841)  hypothetical protein; EcDH1_1306  N/A  Click
15 complement(1407838..1408758)  PHAGE_Entero_SfV: bactoprenol glucosyltransferase; EcDH1_1307; phage(gi19549012)  6e-163  Click
16 complement(1408755..1409117)  PHAGE_Entero_SfV: putative flippase; EcDH1_1308; phage(gi19549013)  1e-58  Click
17 complement(1409270..1410427)  PROPHAGE_Escher_MG1655: CPS-53 (KpLE1) prophage; predicted prophage CPS-53 integrase; EcDH1_1309; phage(gi16130281)  0.0  Click
18 1410603..1410618  attR    GGAATCGAACCTGCAA  N/A  Click
Region 2, total : 8 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1866009..1866020  attL    AGAAAAAATCAG  N/A  Click
2 complement(1872777..1874183)  PHAGE_Equid__1: envelope glycoprotein J; EcDH1_1722; phage(gi50313312)  1e-10  Click
3 1874449..1875945  PHAGE_Amsact_: similar to laminin; EcDH1_1723; phage(gi9964588)  2e-11  Click
4 1876266..1876985  PHAGE_Synech_S_CBS3: group 2 RNA polymerase sigma factor; EcDH1_1724; phage(gi331028036)  6e-09  Click
5 1877031..1877582  integrase domain protein SAM domain protein; EcDH1_1725  N/A  Click
6 1877613..1878470  PHAGE_Cafete_BV_PW1: putative ABC-type amino acid transporter; EcDH1_1726; phage(gi310831221)  4e-05  Click
7 1878575..1879561  pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family; EcDH1_1727  N/A  Click
8 1879576..1880244  polar amino acid ABC transporter, inner membrane subunit; EcDH1_1728  N/A  Click
9 1880241..1880993  PHAGE_Plankt_PaV_LD: ABC transporter; EcDH1_1729; phage(gi371496158)  4e-34  Click
10 1880996..1881007  attR    AGAAAAAATCAG  N/A  Click
Region 3, total : 39 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2225615..2225626  attL    TACCTCTTTTTT  N/A  Click
2 complement(2225770..2226966)  PHAGE_Entero_2008: putative integrase; EcDH1_2064; phage(gi209427727)  1e-135  Click
3 complement(2226941..2227597)  PROPHAGE_Escher_MG1655: IS2 transposase TnpB; EcDH1_2065; phage(gi16130763)  1e-128  Click
4 complement(2228493..2228684)  protein of unknown function DUF1482; EcDH1_2067  N/A  Click
5 complement(2228681..2228869)  DicB family protein; EcDH1_2068  N/A  Click
6 2229269..2229433  hypothetical protein; EcDH1_2069  N/A  Click
7 complement(2229437..2229655)  hypothetical protein; EcDH1_2070  N/A  Click
8 complement(2229685..2229813)  hypothetical protein; EcDH1_2071  N/A  Click
9 complement(2229815..2229970)  PHAGE_Salico_CGphi29: hypothetical protein; EcDH1_2072; phage(gi472340166)  2e-09  Click
10 complement(2230137..2230544)  PHAGE_Cronob_phiES15: putative transcriptional repressor DicA; EcDH1_2073; phage(gi401817574)  5e-33  Click
11 2230628..2230858  PHAGE_Pectob_ZF40: putative cro anti-repressor; EcDH1_2074; phage(gi422936651)  1e-08  Click
12 2230842..2231132  conserved hypothetical protein; EcDH1_2075  N/A  Click
13 2231129..2231356  hypothetical protein; EcDH1_2076  N/A  Click
14 complement(2231741..2232073)  conserved hypothetical protein; EcDH1_2077  N/A  Click
15 2232606..2232845  addiction module antitoxin, RelB/DinJ family; EcDH1_2078  N/A  Click
16 2232845..2233132  addiction module toxin, RelE/StbE family; EcDH1_2079  N/A  Click
17 2233204..2233359  PHAGE_Stx2_c_II: putative host killer protein; EcDH1_2080; phage(gi302393105)  3e-19  Click
18 2233576..2233827  conserved hypothetical protein; EcDH1_2081  N/A  Click
19 2233894..2234172  PHAGE_Cronob_phiES15: hypothetical protein; EcDH1_2082; phage(gi401817580)  2e-13  Click
20 2234174..2235223  PHAGE_Entero_mEp460: hypothetical protein; EcDH1_2083; phage(gi428782365)  1e-113  Click
21 2235237..2235989  PHAGE_Entero_mEp460: late gene regulator; EcDH1_2084; phage(gi428782366)  4e-137  Click
22 complement(2236411..2236623)  cold-shock DNA-binding domain protein; EcDH1_2085  N/A  Click
23 2236924..2237139  PHAGE_Lactoc_bIL312: Csp; EcDH1_2086; phage(gi13095918)  5e-16  Click
24 complement(2237741..2237860)  hypothetical protein; EcDH1_2087  N/A  Click
25 2237902..2238108  PHAGE_Entero_mEp460: porin; EcDH1_2088; phage(gi428782370)  1e-31  Click
26 2238113..2238424  PHAGE_Entero_mEp460: hypothetical protein; EcDH1_2089; phage(gi428782371)  1e-29  Click
27 2238421..2238954  PHAGE_Entero_mEp460: endolysin; EcDH1_2090; phage(gi428782372)  2e-97  Click
28 2238951..2239448  PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; EcDH1_2091; phage(gi16765210)  2e-53  Click
29 2239811..2240023  PHAGE_Lactoc_bIL312: Csp; EcDH1_2092; phage(gi13095918)  1e-15  Click
30 2240369..2240524  conserved hypothetical protein; EcDH1_2094  N/A  Click
31 2240696..2240869  GnsAGnsB family protein; EcDH1_2095  N/A  Click
32 complement(2241021..2241431)  PHAGE_Entero_HK629: putative envelope protein; EcDH1_2096; phage(gi428782079)  2e-60  Click
33 2242111..2242680  PHAGE_Entero_HK630: terminase small subunit nu1; EcDH1_2097; phage(gi428782788)  3e-94  Click
34 2242631..2243593  PROPHAGE_Escher_MG1655: Qin prophage; predicted side tail fibre assembly protein; EcDH1_2098; phage(gi16129506)  0.0  Click
35 2243593..2244168  PROPHAGE_Escher_MG1655: Qin prophage; predicted tail fibre assembly protein; EcDH1_2099; phage(gi16129505)  2e-109  Click
36 complement(2244266..2244856)  PHAGE_Escher_D108: G region invertase; EcDH1_2100; phage(gi281199698)  5e-25  Click
37 complement(2245173..2245439)  DNA-binding transcriptional regulator; EcDH1_2101  N/A  Click
38 2246193..2247476  PHAGE_Burkho_phi1026b: gp59; EcDH1_2102; phage(gi38707949)  1e-33  Click
39 2247565..2249025  PHAGE_Microm_MpV1: hypothetical protein; EcDH1_2103; phage(gi313768442)  1e-40  Click
40 complement(2249060..2249263)  PHAGE_Salmon_SSU5: putative selenium-binding protein YdfZ; EcDH1_2104; phage(gi410491512)  1e-13  Click
41 2258910..2258921  attR    TACCTCTTTTTT  N/A  Click
Region 4, total : 23 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(2452838..2453101)  PHAGE_Psychr_pOW20_A: DNA methylase; EcDH1_2279; phage(gi472339820)  6e-21  Click
2 complement(2453239..2454663)  potassium uptake protein, TrkH family; EcDH1_2280  N/A  Click
3 2455724..2455737  attL    CATTAAATTTTTCT  N/A  Click
4 complement(2455749..2456495)  PHAGE_Gifsy_2: bacteriophage DNA replication protein; EcDH1_2283; phage(gi169257280)  3e-76  Click
5 complement(2456502..2457359)  PHAGE_Gifsy_2: bacteriophage DNA replication protein; Lambda gpo homolog; EcDH1_2284; phage(gi169257279)  9e-23  Click
6 complement(2457372..2457794)  PHAGE_Entero_mEp237: CII protein; EcDH1_2285; phage(gi435439306)  3e-08  Click
7 complement(2457817..2458113)  PHAGE_Aggreg_S1249: phage protein; EcDH1_2286; phage(gi273809591)  2e-14  Click
8 2458237..2458713  prophage repressor; EcDH1_2287  N/A  Click
9 2459022..2459156  hypothetical protein; EcDH1_2288  N/A  Click
10 2459167..2459322  PHAGE_Salico_CGphi29: hypothetical protein; EcDH1_2289; phage(gi472340166)  7e-10  Click
11 complement(2459319..2459930)  PHAGE_Entero_lambda: Superinfection exclusion protein B; EcDH1_2290; phage(gi19263394)  2e-07  Click
12 2460249..2460470  PHAGE_Escher_P13374: host killing protein; EcDH1_2291; phage(gi410491620)  9e-06  Click
13 2460470..2460640  PHAGE_Gifsy_2: hypothetical protein STM1010.1n.Gifsy2; EcDH1_2292; phage(gi169257274)  5e-06  Click
14 2460715..2460990  conserved hypothetical protein; EcDH1_2293  N/A  Click
15 2461092..2463692  PHAGE_Erwini_phiEt88: exodeoxyribonuclease; EcDH1_2294; phage(gi327198600)  1e-83  Click
16 2463685..2464494  PHAGE_Entero_epsilon15: RecT; EcDH1_2295; phage(gi30387413)  1e-81  Click
17 2464738..2464947  protein of unknown function DUF1187; EcDH1_2296  N/A  Click
18 2465026..2465241  protein of unknown function DUF1233 excisionase putative; EcDH1_2297  N/A  Click
19 2465243..2466478  PHAGE_Gifsy_2: bacteriophage integrase; EcDH1_2298; phage(gi169257268)  2e-90  Click
20 2466530..2467465  PHAGE_Parame_FR483: hypothetical protein FR483_N404R; EcDH1_2299; phage(gi155370502)  3e-08  Click
21 complement(2467594..2468967)  PHAGE_Cafete_BV_PW1: putative superfamily II helicase/eIF-4AIII; EcDH1_2300; phage(gi310831360)  1e-46  Click
22 complement(2468997..2469170)  PHAGE_Parame_AR158: hypothetical protein AR158_C602L; EcDH1_2301; phage(gi157953792)  2e-05  Click
23 complement(2469445..2470428)  Mg2 transporter protein CorA family protein; EcDH1_2302  N/A  Click
24 2470683..2471915  PHAGE_Pseudo_MP1412: diguanylate-cyclase GGDEF domain; EcDH1_2303; phage(gi399529005)  3e-06  Click
25 2480938..2480951  attR    CATTAAATTTTTCT  N/A  Click
Region 5, total : 21 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2651725..2651736  attL    GGGAAATGCCAT  N/A  Click
2 2665371..2665775  PHAGE_Entero_HK629: putative envelope protein; EcDH1_2486; phage(gi428782079)  2e-29  Click
3 complement(2667299..2668132)  PHAGE_Lactob_H: hypothetical protein; EcDH1_2488; phage(gi148750872)  4e-05  Click
4 complement(2668239..2668793)  PHAGE_Entero_2: DNA-invertase; EcDH1_2489; phage(gi169936026)  8e-89  Click
5 2668983..2669615  PHAGE_Entero_mEp213: tail fiber assembly protein; EcDH1_2490; phage(gi428782612)  1e-23  Click
6 complement(2669587..2670189)  PHAGE_Entero_HK106: tail fiber assembly protein; EcDH1_2491; phage(gi428783304)  3e-100  Click
7 complement(2670189..2670977)  PHAGE_Entero_SfV: hypothetical protein SfVp21; EcDH1_2492; phage(gi19548989)  5e-52  Click
8 complement(2670981..2671565)  PHAGE_Entero_SfV: tail protein; EcDH1_2493; phage(gi19548988)  1e-113  Click
9 complement(2671556..2672305)  PHAGE_Entero_SfV: tail protein; EcDH1_2494; phage(gi19549009)  6e-136  Click
10 complement(2672274..2672747)  PHAGE_Salmon_ST64B: Portal Protein; EcDH1_2495; phage(gi23505449)  2e-75  Click
11 complement(2672747..2672929)  PHAGE_Salmon_ST64B: putative integral membrane protein; EcDH1_2496; phage(gi23505448)  9e-29  Click
12 complement(2672941..2674308)  PHAGE_Entero_SfV: large terminase subunit; EcDH1_2497; phage(gi19548992)  0.0  Click
13 complement(2674318..2674656)  hypothetical protein; EcDH1_2498  N/A  Click
14 complement(2674653..2675210)  PHAGE_Entero_SfV: hypothetical protein SfVp36; EcDH1_2499; phage(gi19549023)  3e-92  Click
15 complement(2675254..2675454)  PHAGE_Entero_SfV: repressor; EcDH1_2500; phage(gi19549022)  7e-32  Click
16 2675545..2676219  PHAGE_Entero_SfV: repressor; EcDH1_2501; phage(gi19549021)  5e-132  Click
17 2676394..2676702  PHAGE_Cronob_phiES15: hypothetical protein; EcDH1_2502; phage(gi401817573)  2e-11  Click
18 complement(2676640..2676981)  hypothetical protein; EcDH1_2503  N/A  Click
19 2677446..2677691  Excisionase domain protein; EcDH1_2504  N/A  Click
20 2678310..2678321  attR    GGGAAATGCCAT  N/A  Click
21 complement(2678640..2679506)  PROPHAGE_Escher_MG1655: IS3 transposase B; EcDH1_2506; phage(gi16128284)  3e-173  Click
22 complement(2679503..2679802)  PROPHAGE_Escher_MG1655: IS3 transposase A; EcDH1_2507; phage(gi226524700)  4e-49  Click
23 complement(2680151..2681044)  phage exclusion protein Lit; EcDH1_2508  N/A  Click
Region 6, total : 9 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(3299022..3299765)  PHAGE_Entero_HK630: tail fiber assembly protein; EcDH1_3068; phage(gi428782810)  8e-75  Click
2 complement(3299740..3300285)  PHAGE_Entero_HK630: terminase small subunit nu1; EcDH1_3069; phage(gi428782788)  1e-96  Click
3 complement(3301033..3301239)  PHAGE_Entero_HK630: hypothetical protein; EcDH1_3070; phage(gi428782856)  1e-32  Click
4 3301525..3301935  PHAGE_Entero_HK630: hypothetical protein; EcDH1_3071; phage(gi428782855)  7e-75  Click
5 3302226..3302519  PHAGE_Escher_TL_2011c: Bor protein precursor; EcDH1_3072; phage(gi418487071)  2e-49  Click
6 complement(3302551..3303012)  PHAGE_Entero_HK630: cell lysis protein Rz; EcDH1_3073; phage(gi428782852)  2e-79  Click
7 complement(3303009..3303506)  PHAGE_Entero_cdtI: lysin; EcDH1_3074; phage(gi148609440)  3e-92  Click
8 complement(3303506..3303721)  PHAGE_Stx2_c_II: holin; EcDH1_3075; phage(gi302393164)  1e-28  Click
9 3304000..3304980  PROPHAGE_Escher_MG1655: IS5 transposase and trans-activator; EcDH1_3076; phage(gi16131377)  0.0  Click