Definition | Escherichia coli DH1, complete genome. |
---|---|
Accession | CP001637 |
Length | 4,630,707 |
Legend
Hits against Virus and prophage DB | |
Hits against Bacterial DB or GenBank file |
Region 1, total : 16 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1399343..1400278 | PHAGE_Burkho_phi1026b: gp58; EcDH1_1293; phage(gi38707948) | 1e-15 | Click |
2 | complement(1400462..1400662) | PHAGE_Entero_HK633: hypothetical protein; EcDH1_1294; phage(gi428782548) | 3e-34 | Click |
3 | 1400682..1400697 | attL GGAATCGAACCTGCAA | N/A | Click |
4 | complement(1400794..1401099) | PHAGE_Entero_SfV: hypothetical protein SfVp28; EcDH1_1295; phage(gi19549015) | 3e-52 | Click |
5 | complement(1401099..1401461) | PHAGE_Entero_SfV: hypothetical protein SfVp29; EcDH1_1296; phage(gi19549016) | 5e-67 | Click |
6 | complement(1401452..1401988) | PHAGE_Entero_SfV: hypothetical protein SfVp30; EcDH1_1297; phage(gi19549017) | 3e-99 | Click |
7 | complement(1402116..1402940) | PHAGE_Entero_SfV: hypothetical protein SfVp31; EcDH1_1298; phage(gi19549018) | 3e-151 | Click |
8 | complement(1403006..1403368) | PHAGE_Entero_SfV: hypothetical protein SfVp32; EcDH1_1299; phage(gi19549019) | 6e-63 | Click |
9 | 1404097..1404585 | PHAGE_Entero_SfV: hypothetical protein SfVp40; EcDH1_1301; phage(gi19549027) | 2e-87 | Click |
10 | 1404585..1404860 | PHAGE_Entero_SfV: DNA adenine methylase; EcDH1_1302; phage(gi19549028) | 2e-50 | Click |
11 | 1404826..1405428 | PHAGE_Entero_SfV: hypothetical protein SfVp21; EcDH1_1303; phage(gi19548989) | 2e-51 | Click |
12 | 1405455..1405895 | PHAGE_Entero_mEp213: tail fiber assembly protein; EcDH1_1304; phage(gi428782612) | 2e-26 | Click |
13 | complement(1405867..1406211) | PHAGE_Entero_HK106: tail fiber assembly protein; EcDH1_1305; phage(gi428783304) | 4e-47 | Click |
14 | complement(1406510..1407841) | hypothetical protein; EcDH1_1306 | N/A | Click |
15 | complement(1407838..1408758) | PHAGE_Entero_SfV: bactoprenol glucosyltransferase; EcDH1_1307; phage(gi19549012) | 6e-163 | Click |
16 | complement(1408755..1409117) | PHAGE_Entero_SfV: putative flippase; EcDH1_1308; phage(gi19549013) | 1e-58 | Click |
17 | complement(1409270..1410427) | PROPHAGE_Escher_MG1655: CPS-53 (KpLE1) prophage; predicted prophage CPS-53 integrase; EcDH1_1309; phage(gi16130281) | 0.0 | Click |
18 | 1410603..1410618 | attR GGAATCGAACCTGCAA | N/A | Click |
Region 2, total : 8 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1866009..1866020 | attL AGAAAAAATCAG | N/A | Click |
2 | complement(1872777..1874183) | PHAGE_Equid__1: envelope glycoprotein J; EcDH1_1722; phage(gi50313312) | 1e-10 | Click |
3 | 1874449..1875945 | PHAGE_Amsact_: similar to laminin; EcDH1_1723; phage(gi9964588) | 2e-11 | Click |
4 | 1876266..1876985 | PHAGE_Synech_S_CBS3: group 2 RNA polymerase sigma factor; EcDH1_1724; phage(gi331028036) | 6e-09 | Click |
5 | 1877031..1877582 | integrase domain protein SAM domain protein; EcDH1_1725 | N/A | Click |
6 | 1877613..1878470 | PHAGE_Cafete_BV_PW1: putative ABC-type amino acid transporter; EcDH1_1726; phage(gi310831221) | 4e-05 | Click |
7 | 1878575..1879561 | pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family; EcDH1_1727 | N/A | Click |
8 | 1879576..1880244 | polar amino acid ABC transporter, inner membrane subunit; EcDH1_1728 | N/A | Click |
9 | 1880241..1880993 | PHAGE_Plankt_PaV_LD: ABC transporter; EcDH1_1729; phage(gi371496158) | 4e-34 | Click |
10 | 1880996..1881007 | attR AGAAAAAATCAG | N/A | Click |
Region 3, total : 39 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 2225615..2225626 | attL TACCTCTTTTTT | N/A | Click |
2 | complement(2225770..2226966) | PHAGE_Entero_2008: putative integrase; EcDH1_2064; phage(gi209427727) | 1e-135 | Click |
3 | complement(2226941..2227597) | PROPHAGE_Escher_MG1655: IS2 transposase TnpB; EcDH1_2065; phage(gi16130763) | 1e-128 | Click |
4 | complement(2228493..2228684) | protein of unknown function DUF1482; EcDH1_2067 | N/A | Click |
5 | complement(2228681..2228869) | DicB family protein; EcDH1_2068 | N/A | Click |
6 | 2229269..2229433 | hypothetical protein; EcDH1_2069 | N/A | Click |
7 | complement(2229437..2229655) | hypothetical protein; EcDH1_2070 | N/A | Click |
8 | complement(2229685..2229813) | hypothetical protein; EcDH1_2071 | N/A | Click |
9 | complement(2229815..2229970) | PHAGE_Salico_CGphi29: hypothetical protein; EcDH1_2072; phage(gi472340166) | 2e-09 | Click |
10 | complement(2230137..2230544) | PHAGE_Cronob_phiES15: putative transcriptional repressor DicA; EcDH1_2073; phage(gi401817574) | 5e-33 | Click |
11 | 2230628..2230858 | PHAGE_Pectob_ZF40: putative cro anti-repressor; EcDH1_2074; phage(gi422936651) | 1e-08 | Click |
12 | 2230842..2231132 | conserved hypothetical protein; EcDH1_2075 | N/A | Click |
13 | 2231129..2231356 | hypothetical protein; EcDH1_2076 | N/A | Click |
14 | complement(2231741..2232073) | conserved hypothetical protein; EcDH1_2077 | N/A | Click |
15 | 2232606..2232845 | addiction module antitoxin, RelB/DinJ family; EcDH1_2078 | N/A | Click |
16 | 2232845..2233132 | addiction module toxin, RelE/StbE family; EcDH1_2079 | N/A | Click |
17 | 2233204..2233359 | PHAGE_Stx2_c_II: putative host killer protein; EcDH1_2080; phage(gi302393105) | 3e-19 | Click |
18 | 2233576..2233827 | conserved hypothetical protein; EcDH1_2081 | N/A | Click |
19 | 2233894..2234172 | PHAGE_Cronob_phiES15: hypothetical protein; EcDH1_2082; phage(gi401817580) | 2e-13 | Click |
20 | 2234174..2235223 | PHAGE_Entero_mEp460: hypothetical protein; EcDH1_2083; phage(gi428782365) | 1e-113 | Click |
21 | 2235237..2235989 | PHAGE_Entero_mEp460: late gene regulator; EcDH1_2084; phage(gi428782366) | 4e-137 | Click |
22 | complement(2236411..2236623) | cold-shock DNA-binding domain protein; EcDH1_2085 | N/A | Click |
23 | 2236924..2237139 | PHAGE_Lactoc_bIL312: Csp; EcDH1_2086; phage(gi13095918) | 5e-16 | Click |
24 | complement(2237741..2237860) | hypothetical protein; EcDH1_2087 | N/A | Click |
25 | 2237902..2238108 | PHAGE_Entero_mEp460: porin; EcDH1_2088; phage(gi428782370) | 1e-31 | Click |
26 | 2238113..2238424 | PHAGE_Entero_mEp460: hypothetical protein; EcDH1_2089; phage(gi428782371) | 1e-29 | Click |
27 | 2238421..2238954 | PHAGE_Entero_mEp460: endolysin; EcDH1_2090; phage(gi428782372) | 2e-97 | Click |
28 | 2238951..2239448 | PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; EcDH1_2091; phage(gi16765210) | 2e-53 | Click |
29 | 2239811..2240023 | PHAGE_Lactoc_bIL312: Csp; EcDH1_2092; phage(gi13095918) | 1e-15 | Click |
30 | 2240369..2240524 | conserved hypothetical protein; EcDH1_2094 | N/A | Click |
31 | 2240696..2240869 | GnsAGnsB family protein; EcDH1_2095 | N/A | Click |
32 | complement(2241021..2241431) | PHAGE_Entero_HK629: putative envelope protein; EcDH1_2096; phage(gi428782079) | 2e-60 | Click |
33 | 2242111..2242680 | PHAGE_Entero_HK630: terminase small subunit nu1; EcDH1_2097; phage(gi428782788) | 3e-94 | Click |
34 | 2242631..2243593 | PROPHAGE_Escher_MG1655: Qin prophage; predicted side tail fibre assembly protein; EcDH1_2098; phage(gi16129506) | 0.0 | Click |
35 | 2243593..2244168 | PROPHAGE_Escher_MG1655: Qin prophage; predicted tail fibre assembly protein; EcDH1_2099; phage(gi16129505) | 2e-109 | Click |
36 | complement(2244266..2244856) | PHAGE_Escher_D108: G region invertase; EcDH1_2100; phage(gi281199698) | 5e-25 | Click |
37 | complement(2245173..2245439) | DNA-binding transcriptional regulator; EcDH1_2101 | N/A | Click |
38 | 2246193..2247476 | PHAGE_Burkho_phi1026b: gp59; EcDH1_2102; phage(gi38707949) | 1e-33 | Click |
39 | 2247565..2249025 | PHAGE_Microm_MpV1: hypothetical protein; EcDH1_2103; phage(gi313768442) | 1e-40 | Click |
40 | complement(2249060..2249263) | PHAGE_Salmon_SSU5: putative selenium-binding protein YdfZ; EcDH1_2104; phage(gi410491512) | 1e-13 | Click |
41 | 2258910..2258921 | attR TACCTCTTTTTT | N/A | Click |
Region 4, total : 23 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | complement(2452838..2453101) | PHAGE_Psychr_pOW20_A: DNA methylase; EcDH1_2279; phage(gi472339820) | 6e-21 | Click |
2 | complement(2453239..2454663) | potassium uptake protein, TrkH family; EcDH1_2280 | N/A | Click |
3 | 2455724..2455737 | attL CATTAAATTTTTCT | N/A | Click |
4 | complement(2455749..2456495) | PHAGE_Gifsy_2: bacteriophage DNA replication protein; EcDH1_2283; phage(gi169257280) | 3e-76 | Click |
5 | complement(2456502..2457359) | PHAGE_Gifsy_2: bacteriophage DNA replication protein; Lambda gpo homolog; EcDH1_2284; phage(gi169257279) | 9e-23 | Click |
6 | complement(2457372..2457794) | PHAGE_Entero_mEp237: CII protein; EcDH1_2285; phage(gi435439306) | 3e-08 | Click |
7 | complement(2457817..2458113) | PHAGE_Aggreg_S1249: phage protein; EcDH1_2286; phage(gi273809591) | 2e-14 | Click |
8 | 2458237..2458713 | prophage repressor; EcDH1_2287 | N/A | Click |
9 | 2459022..2459156 | hypothetical protein; EcDH1_2288 | N/A | Click |
10 | 2459167..2459322 | PHAGE_Salico_CGphi29: hypothetical protein; EcDH1_2289; phage(gi472340166) | 7e-10 | Click |
11 | complement(2459319..2459930) | PHAGE_Entero_lambda: Superinfection exclusion protein B; EcDH1_2290; phage(gi19263394) | 2e-07 | Click |
12 | 2460249..2460470 | PHAGE_Escher_P13374: host killing protein; EcDH1_2291; phage(gi410491620) | 9e-06 | Click |
13 | 2460470..2460640 | PHAGE_Gifsy_2: hypothetical protein STM1010.1n.Gifsy2; EcDH1_2292; phage(gi169257274) | 5e-06 | Click |
14 | 2460715..2460990 | conserved hypothetical protein; EcDH1_2293 | N/A | Click |
15 | 2461092..2463692 | PHAGE_Erwini_phiEt88: exodeoxyribonuclease; EcDH1_2294; phage(gi327198600) | 1e-83 | Click |
16 | 2463685..2464494 | PHAGE_Entero_epsilon15: RecT; EcDH1_2295; phage(gi30387413) | 1e-81 | Click |
17 | 2464738..2464947 | protein of unknown function DUF1187; EcDH1_2296 | N/A | Click |
18 | 2465026..2465241 | protein of unknown function DUF1233 excisionase putative; EcDH1_2297 | N/A | Click |
19 | 2465243..2466478 | PHAGE_Gifsy_2: bacteriophage integrase; EcDH1_2298; phage(gi169257268) | 2e-90 | Click |
20 | 2466530..2467465 | PHAGE_Parame_FR483: hypothetical protein FR483_N404R; EcDH1_2299; phage(gi155370502) | 3e-08 | Click |
21 | complement(2467594..2468967) | PHAGE_Cafete_BV_PW1: putative superfamily II helicase/eIF-4AIII; EcDH1_2300; phage(gi310831360) | 1e-46 | Click |
22 | complement(2468997..2469170) | PHAGE_Parame_AR158: hypothetical protein AR158_C602L; EcDH1_2301; phage(gi157953792) | 2e-05 | Click |
23 | complement(2469445..2470428) | Mg2 transporter protein CorA family protein; EcDH1_2302 | N/A | Click |
24 | 2470683..2471915 | PHAGE_Pseudo_MP1412: diguanylate-cyclase GGDEF domain; EcDH1_2303; phage(gi399529005) | 3e-06 | Click |
25 | 2480938..2480951 | attR CATTAAATTTTTCT | N/A | Click |
Region 5, total : 21 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 2651725..2651736 | attL GGGAAATGCCAT | N/A | Click |
2 | 2665371..2665775 | PHAGE_Entero_HK629: putative envelope protein; EcDH1_2486; phage(gi428782079) | 2e-29 | Click |
3 | complement(2667299..2668132) | PHAGE_Lactob_H: hypothetical protein; EcDH1_2488; phage(gi148750872) | 4e-05 | Click |
4 | complement(2668239..2668793) | PHAGE_Entero_2: DNA-invertase; EcDH1_2489; phage(gi169936026) | 8e-89 | Click |
5 | 2668983..2669615 | PHAGE_Entero_mEp213: tail fiber assembly protein; EcDH1_2490; phage(gi428782612) | 1e-23 | Click |
6 | complement(2669587..2670189) | PHAGE_Entero_HK106: tail fiber assembly protein; EcDH1_2491; phage(gi428783304) | 3e-100 | Click |
7 | complement(2670189..2670977) | PHAGE_Entero_SfV: hypothetical protein SfVp21; EcDH1_2492; phage(gi19548989) | 5e-52 | Click |
8 | complement(2670981..2671565) | PHAGE_Entero_SfV: tail protein; EcDH1_2493; phage(gi19548988) | 1e-113 | Click |
9 | complement(2671556..2672305) | PHAGE_Entero_SfV: tail protein; EcDH1_2494; phage(gi19549009) | 6e-136 | Click |
10 | complement(2672274..2672747) | PHAGE_Salmon_ST64B: Portal Protein; EcDH1_2495; phage(gi23505449) | 2e-75 | Click |
11 | complement(2672747..2672929) | PHAGE_Salmon_ST64B: putative integral membrane protein; EcDH1_2496; phage(gi23505448) | 9e-29 | Click |
12 | complement(2672941..2674308) | PHAGE_Entero_SfV: large terminase subunit; EcDH1_2497; phage(gi19548992) | 0.0 | Click |
13 | complement(2674318..2674656) | hypothetical protein; EcDH1_2498 | N/A | Click |
14 | complement(2674653..2675210) | PHAGE_Entero_SfV: hypothetical protein SfVp36; EcDH1_2499; phage(gi19549023) | 3e-92 | Click |
15 | complement(2675254..2675454) | PHAGE_Entero_SfV: repressor; EcDH1_2500; phage(gi19549022) | 7e-32 | Click |
16 | 2675545..2676219 | PHAGE_Entero_SfV: repressor; EcDH1_2501; phage(gi19549021) | 5e-132 | Click |
17 | 2676394..2676702 | PHAGE_Cronob_phiES15: hypothetical protein; EcDH1_2502; phage(gi401817573) | 2e-11 | Click |
18 | complement(2676640..2676981) | hypothetical protein; EcDH1_2503 | N/A | Click |
19 | 2677446..2677691 | Excisionase domain protein; EcDH1_2504 | N/A | Click |
20 | 2678310..2678321 | attR GGGAAATGCCAT | N/A | Click |
21 | complement(2678640..2679506) | PROPHAGE_Escher_MG1655: IS3 transposase B; EcDH1_2506; phage(gi16128284) | 3e-173 | Click |
22 | complement(2679503..2679802) | PROPHAGE_Escher_MG1655: IS3 transposase A; EcDH1_2507; phage(gi226524700) | 4e-49 | Click |
23 | complement(2680151..2681044) | phage exclusion protein Lit; EcDH1_2508 | N/A | Click |
Region 6, total : 9 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | complement(3299022..3299765) | PHAGE_Entero_HK630: tail fiber assembly protein; EcDH1_3068; phage(gi428782810) | 8e-75 | Click |
2 | complement(3299740..3300285) | PHAGE_Entero_HK630: terminase small subunit nu1; EcDH1_3069; phage(gi428782788) | 1e-96 | Click |
3 | complement(3301033..3301239) | PHAGE_Entero_HK630: hypothetical protein; EcDH1_3070; phage(gi428782856) | 1e-32 | Click |
4 | 3301525..3301935 | PHAGE_Entero_HK630: hypothetical protein; EcDH1_3071; phage(gi428782855) | 7e-75 | Click |
5 | 3302226..3302519 | PHAGE_Escher_TL_2011c: Bor protein precursor; EcDH1_3072; phage(gi418487071) | 2e-49 | Click |
6 | complement(3302551..3303012) | PHAGE_Entero_HK630: cell lysis protein Rz; EcDH1_3073; phage(gi428782852) | 2e-79 | Click |
7 | complement(3303009..3303506) | PHAGE_Entero_cdtI: lysin; EcDH1_3074; phage(gi148609440) | 3e-92 | Click |
8 | complement(3303506..3303721) | PHAGE_Stx2_c_II: holin; EcDH1_3075; phage(gi302393164) | 1e-28 | Click |
9 | 3304000..3304980 | PROPHAGE_Escher_MG1655: IS5 transposase and trans-activator; EcDH1_3076; phage(gi16131377) | 0.0 | Click |