| Definition | Yersinia pestis biovar Medievalis str. Harbin 35, complete genome. |
|---|---|
| Accession | CP001608 |
| Length | 4,532,063 |
Legend
| Hits against Virus and prophage DB | |
| Hits against Bacterial DB or GenBank file |
Region 1, total : 22 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 1121091..1121104 | attL AATCAGTTTGTGTG | N/A | Click |
| 2 | 1130561..1131325 | PHAGE_Vibrio_VP882: putative exonuclease; YPC_1128; phage(gi126010887) | 4e-10 | Click |
| 3 | 1131438..1131514 | tRNA | N/A | Click |
| 4 | complement(1131571..1133055) | putative permease; YPC_1130 | N/A | Click |
| 5 | 1133249..1133401 | hypothetical protein; YPC_1131 | N/A | Click |
| 6 | 1133394..1133627 | hypothetical protein; YPC_1132 | N/A | Click |
| 7 | complement(1133678..1134460) | PROPHAGE_Escher_CFT073: transposase/IS protein; YPC_1133; phage(gi26248359) | 3e-143 | Click |
| 8 | complement(1134457..1135479) | PROPHAGE_Escher_CFT073: transposase; YPC_1134; phage(gi26248360) | 0.0 | Click |
| 9 | complement(1135493..1135669) | PROPHAGE_Escher_MG1655: CP4-57 prophage; integrase; YPC_1135; phage(gi16130540) | 2e-06 | Click |
| 10 | 1135754..1135775 | attL CTTGGACTACTACAGACACAAA | N/A | Click |
| 11 | 1136081..1136401 | PHAGE_Burkho_2: gp7, putative addiction module killer protein; YPC_1136; phage(gi134288691) | 2e-11 | Click |
| 12 | 1136401..1136721 | PHAGE_Burkho_2: gp6, putative addiction module antidote protein; YPC_1137; phage(gi134288715) | 5e-08 | Click |
| 13 | 1136718..1136819 | hypothetical protein; YPC_1138 | N/A | Click |
| 14 | 1136829..1137023 | hypothetical protein; YPC_1139 | N/A | Click |
| 15 | complement(1137070..1138158) | PHAGE_Burkho_BcepGomr: BcepGomrgp62; YPC_1140; phage(gi146329974) | 6e-28 | Click |
| 16 | complement(1138155..1139114) | PHAGE_Entero_P4: DNA primase; YPC_1141; phage(gi9627512) | 8e-47 | Click |
| 17 | complement(1139107..1139649) | PHAGE_Entero_phiP27: hypothetical protein P27p16; YPC_1142; phage(gi18249880) | 7e-07 | Click |
| 18 | complement(1139649..1139849) | PHAGE_Entero_P4: transcriptional regulator; YPC_1143; phage(gi9627517) | 5e-08 | Click |
| 19 | complement(1139842..1140738) | PROPHAGE_Salmon_LT2: integrase; YPC_1144; phage(gi16766072) | 4e-91 | Click |
| 20 | complement(1140751..1141041) | hypothetical protein; YPC_1145 | N/A | Click |
| 21 | 1141537..1141764 | hypothetical protein; YPC_1146 | N/A | Click |
| 22 | complement(1141926..1143596) | PHAGE_Staphy_phiNM3: hypothetical protein; YPC_1147; phage(gi118725072) | 8e-06 | Click |
| 23 | complement(1143647..1144735) | putative phage protein; YPC_1148 | N/A | Click |
| 24 | complement(1144814..1146013) | PROPHAGE_Escher_MG1655: CP4-57 prophage; integrase; YPC_1149; phage(gi16130540) | 7e-131 | Click |
| 25 | 1146109..1146130 | attR CTTGGACTACTACAGACACAAA | N/A | Click |
| 26 | complement(1146237..1146746) | PROPHAGE_Salmon_Ty2: transposase; YPC_1150; phage(gi29143766) | 6e-84 | Click |
| 27 | 1154502..1154515 | attR AATCAGTTTGTGTG | N/A | Click |
Region 2, total : 57 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 2131579..2132109 | PHAGE_Bacill_SPBc2: putative disulfide oxidoreductase; YPC_2171; phage(gi9630148) | 3e-05 | Click |
| 2 | complement(2132526..2132882) | hypothetical phage protein; YPC_2172 | N/A | Click |
| 3 | 2133974..2134714 | hypothetical phage protein; YPC_2173 | N/A | Click |
| 4 | 2134731..2135930 | PHAGE_Africa_virus: NifS-like protein; YPC_2174; phage(gi9628230) | 4e-08 | Click |
| 5 | 2135934..2137106 | hypothetical phage protein; YPC_2175 | N/A | Click |
| 6 | 2137411..2138619 | PROPHAGE_Escher_CFT073: transposase; YPC_2176; phage(gi26246249) | 0.0 | Click |
| 7 | complement(2138688..2138843) | hypothetical phage protein; YPC_2177 | N/A | Click |
| 8 | complement(2138840..2139259) | PHAGE_Bacter_2: tail fiber; YPC_2178; phage(gi212499733) | 2e-10 | Click |
| 9 | complement(2139270..2140187) | PHAGE_Salmon_SSU5: putative phage tail fiber protein; YPC_2179; phage(gi410491431) | 2e-09 | Click |
| 10 | complement(2140204..2141202) | PHAGE_Cronob_phiES15: hypothetical protein; YPC_2180; phage(gi401817612) | 7e-25 | Click |
| 11 | 2140557..2140568 | attL TTGGCGGCTCAG | N/A | Click |
| 12 | complement(2141202..2144405) | PHAGE_Cronob_phiES15: putative host specificity protein; YPC_2181; phage(gi401817611) | 0.0 | Click |
| 13 | complement(2144771..2144935) | hypothetical protein; YPC_2182 | N/A | Click |
| 14 | complement(2144977..2145597) | PHAGE_Entero_mEpX2: tail assembly protein; YPC_2183; phage(gi428765633) | 9e-66 | Click |
| 15 | complement(2145622..2145741) | hypothetical protein; YPC_2184 | N/A | Click |
| 16 | complement(2146011..2146562) | PHAGE_Cronob_phiES15: hypothetical protein; YPC_2185; phage(gi401817606) | 5e-08 | Click |
| 17 | complement(2146661..2147755) | PHAGE_Haemop_Aaphi23: putative antirepressor protein Ant; YPC_2186; phage(gi31544021) | 4e-37 | Click |
| 18 | complement(2147742..2147933) | PHAGE_Escher_TL_2011b: hypothetical protein; YPC_2187; phage(gi418487672) | 6e-15 | Click |
| 19 | 2147925..2148464 | PHAGE_Escher_TL_2011b: hypothetical protein; YPC_2188; phage(gi418487671) | 3e-32 | Click |
| 20 | complement(2148543..2149175) | hypothetical phage protein; YPC_2189 | N/A | Click |
| 21 | complement(2149436..2150146) | PHAGE_Entero_HK140: minor tail protein K; YPC_2190; phage(gi428781957) | 2e-108 | Click |
| 22 | complement(2150149..2150901) | PHAGE_Entero_HK225: minor tail protein; YPC_2191; phage(gi428782393) | 3e-101 | Click |
| 23 | complement(2151075..2151416) | PHAGE_Cronob_phiES15: putative minor tail protein; YPC_2192; phage(gi401817607) | 2e-31 | Click |
| 24 | complement(2151419..2154922) | PHAGE_Entero_mEp213: tail length tape measure protein; YPC_2193; phage(gi428782602) | 5e-152 | Click |
| 25 | complement(2154923..2155144) | PHAGE_Cronob_phiES15: hypothetical protein; YPC_2194; phage(gi401817604) | 6e-14 | Click |
| 26 | complement(2155231..2155542) | PHAGE_Cronob_phiES15: hypothetical protein; YPC_2195; phage(gi401817603) | 9e-32 | Click |
| 27 | complement(2155555..2156475) | PHAGE_Cronob_phiES15: putative major tail protein; YPC_2196; phage(gi401817602) | 3e-75 | Click |
| 28 | complement(2156541..2156948) | PHAGE_Cronob_phiES15: hypothetical protein; YPC_2197; phage(gi401817601) | 1e-16 | Click |
| 29 | complement(2156945..2157529) | PHAGE_Shigel_EP23: putative tail protein; YPC_2198; phage(gi371496282) | 2e-27 | Click |
| 30 | complement(2157531..2157881) | PHAGE_Cronob_phiES15: putative structural protein 2; YPC_2199; phage(gi401817599) | 5e-33 | Click |
| 31 | complement(2157883..2158137) | PHAGE_Salmon_SSU5: hypothetical protein; YPC_2200; phage(gi410491538) | 8e-20 | Click |
| 32 | 2158084..2158215 | hypothetical protein; YPC_2201 | N/A | Click |
| 33 | complement(2158664..2159869) | PHAGE_Acinet_Bphi_B1251: major capsid protein; YPC_2202; phage(gi423262007) | 1e-113 | Click |
| 34 | complement(2159883..2160656) | PHAGE_Xantho_Xp15: putative phage structural protein; YPC_2203; phage(gi66392059) | 1e-19 | Click |
| 35 | complement(2160778..2161890) | PHAGE_Cronob_phiES15: hypothetical protein; YPC_2204; phage(gi401817594) | 3e-123 | Click |
| 36 | complement(2161891..2162532) | PHAGE_Burkho_KL1: portal protein; YPC_2205; phage(gi399528722) | 1e-34 | Click |
| 37 | complement(2162551..2163279) | PHAGE_Burkho_KL1: portal protein; YPC_2206; phage(gi399528722) | 2e-35 | Click |
| 38 | complement(2163279..2164253) | PHAGE_Cronob_phiES15: terminase large subunit; YPC_2207; phage(gi401817592) | 5e-144 | Click |
| 39 | complement(2164258..2165466) | PROPHAGE_Escher_CFT073: transposase; YPC_2208; phage(gi26246249) | 0.0 | Click |
| 40 | complement(2166101..2166550) | PHAGE_Salmon_vB_SosS_Oslo: hypothetical protein; YPC_2209; phage(gi399528759) | 4e-51 | Click |
| 41 | complement(2166581..2167216) | PHAGE_Pectob_ZF40: putative transposase; YPC_2210; phage(gi422936679) | 3e-87 | Click |
| 42 | complement(2167673..2168470) | PHAGE_Cronob_ENT47670: phage antirepressor protein; YPC_2211; phage(gi431810509) | 4e-50 | Click |
| 43 | complement(2168852..2168944) | hypothetical protein; YPC_2212 | N/A | Click |
| 44 | complement(2168932..2169390) | PHAGE_Entero_cdtI: lysin; YPC_2213; phage(gi148609441) | 2e-24 | Click |
| 45 | complement(2169375..2169887) | PHAGE_Cronob_phiES15: putative endolysin; YPC_2214; phage(gi401817587) | 2e-51 | Click |
| 46 | complement(2170058..2170237) | putative phage protein; YPC_2215 | N/A | Click |
| 47 | 2170360..2170635 | hypothetical phage protein; YPC_2216 | N/A | Click |
| 48 | complement(2170632..2170841) | hypothetical phage protein; YPC_2217 | N/A | Click |
| 49 | 2170998..2171180 | hypothetical phage protein; YPC_2218 | N/A | Click |
| 50 | complement(2171265..2171828) | PHAGE_Salmon_SPN3UB: hypothetical protein; YPC_2219; phage(gi423262398) | 1e-29 | Click |
| 51 | complement(2172099..2172488) | PHAGE_Entero_2008: antitermination protein Q; YPC_2220; phage(gi209427762) | 2e-44 | Click |
| 52 | complement(2172489..2173094) | PHAGE_Salmon_ST160: NinG; YPC_2221; phage(gi318065938) | 4e-43 | Click |
| 53 | complement(2173168..2173596) | PHAGE_Cronob_ENT47670: putative ninB protein; YPC_2222; phage(gi431810524) | 2e-46 | Click |
| 54 | 2173695..2174339 | PHAGE_Pseudo_F116: DNA adenine methyltransferase; YPC_2223; phage(gi56692911) | 4e-43 | Click |
| 55 | 2174639..2174899 | PHAGE_Gifsy_2: bacteriophage excisionase; YPC_2224; phage(gi169257269) | 4e-19 | Click |
| 56 | complement(2175067..2175849) | PROPHAGE_Escher_CFT073: transposase/IS protein; YPC_2225; phage(gi26248359) | 1e-142 | Click |
| 57 | complement(2175846..2176868) | PROPHAGE_Escher_CFT073: transposase; YPC_2226; phage(gi26248360) | 0.0 | Click |
| 58 | 2176733..2176744 | attR TTGGCGGCTCAG | N/A | Click |
| 59 | 2176925..2178175 | PHAGE_Salmon_1: putative bacteriophage integrase; YPC_2227; phage(gi169257156) | 3e-125 | Click |
Region 3, total : 24 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 2306498..2306509 | attL GGTTTATTCAGT | N/A | Click |
| 2 | complement(2309176..2309307) | PROPHAGE_Salmon_LT2: transposase; YPC_2368; phage(gi16766077) | 1e-06 | Click |
| 3 | complement(2309334..2309540) | PHAGE_Entero_Sf6: putative transposase OrfB; YPC_2369; phage(gi41057343) | 1e-22 | Click |
| 4 | 2309958..2310392 | hypothetical protein; YPC_2370 | N/A | Click |
| 5 | 2310404..2310973 | putative exported protein; YPC_2371 | N/A | Click |
| 6 | complement(2311391..2311729) | PROPHAGE_Escher_CFT073: transposase; YPC_2372; phage(gi26246249) | 2e-56 | Click |
| 7 | complement(2311729..2312589) | PROPHAGE_Escher_CFT073: transposase; YPC_2373; phage(gi26246249) | 3e-139 | Click |
| 8 | complement(2312637..2313713) | hypothetical protein; YPC_2374 | N/A | Click |
| 9 | complement(2313779..2314069) | PHAGE_Burkho_phiE202: gp7, pANL12; YPC_2375; phage(gi134288781) | 3e-07 | Click |
| 10 | complement(2314050..2314322) | PHAGE_Burkho_phiE202: gp6, pANL56; YPC_2376; phage(gi134288760) | 2e-12 | Click |
| 11 | 2314353..2314712 | PHAGE_Entero_PsP3: gp15; YPC_2377; phage(gi41057367) | 9e-19 | Click |
| 12 | 2314709..2315008 | PHAGE_Entero_PsP3: gp16; YPC_2378; phage(gi41057368) | 8e-25 | Click |
| 13 | 2315025..2315312 | PHAGE_Aeromo_vB_AsaM_56: putative tail-fiber protein; YPC_2379; phage(gi422937565) | 7e-06 | Click |
| 14 | 2315427..2315438 | attR GGTTTATTCAGT | N/A | Click |
| 15 | 2315563..2315575 | attL AAAAAATAAAATA | N/A | Click |
| 16 | 2315747..2315962 | putative membrane protein; YPC_2380 | N/A | Click |
| 17 | 2315959..2316264 | hypothetical protein; YPC_2381 | N/A | Click |
| 18 | 2316245..2316523 | putative membrane protein; YPC_2382 | N/A | Click |
| 19 | 2316688..2316828 | PHAGE_Entero_PsP3: gp21; YPC_2383; phage(gi41057373) | 1e-13 | Click |
| 20 | 2316939..2317358 | hypothetical protein; YPC_2384 | N/A | Click |
| 21 | 2317430..2318389 | PHAGE_Lactob_phiAT3: putative transposase B; YPC_2385; phage(gi48697274) | 6e-15 | Click |
| 22 | 2318609..2318953 | hypothetical protein; YPC_2386 | N/A | Click |
| 23 | 2318979..2319194 | hypothetical protein; YPC_2387 | N/A | Click |
| 24 | complement(2320016..2320162) | hypothetical protein; YPC_2388 | N/A | Click |
| 25 | complement(2320531..2320758) | PHAGE_Salmon_SPN9CC: replicative DNA helicase; YPC_2389; phage(gi389060513) | 2e-14 | Click |
| 26 | 2320869..2321384 | PHAGE_Pectob_ZF40: putative integrase; YPC_2390; phage(gi422936642) | 6e-63 | Click |
| 27 | 2321272..2321541 | PHAGE_Pectob_ZF40: putative integrase; YPC_2391; phage(gi422936642) | 3e-20 | Click |
| 28 | 2327972..2327984 | attR AAAAAATAAAATA | N/A | Click |
Region 4, total : 18 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(2856839..2857579) | PHAGE_Acanth_moumouvirus: putative glucosamine-fructose-6-phosphate aminotransferase; YPC_2948; phage(gi441432573) | 3e-05 | Click |
| 2 | complement(2857877..2858656) | PHAGE_Entero_HK97: tail fiber; YPC_2949; phage(gi9634179) | 8e-54 | Click |
| 3 | complement(2858753..2859100) | PHAGE_Entero_SfV: tail protein; YPC_2950; phage(gi19548988) | 7e-11 | Click |
| 4 | complement(2859097..2859357) | PHAGE_Salmon_ST64B: putative tail protein; YPC_2951; phage(gi23505467) | 5e-05 | Click |
| 5 | complement(2859354..2860490) | PHAGE_Entero_SfV: tail protein; YPC_2952; phage(gi19549009) | 8e-33 | Click |
| 6 | complement(2860494..2860949) | PHAGE_Entero_SfV: tail protein; YPC_2953; phage(gi19549008) | 5e-14 | Click |
| 7 | complement(2860946..2861542) | PHAGE_Entero_SfV: tail protein; YPC_2954; phage(gi19549007) | 2e-17 | Click |
| 8 | complement(2861558..2862613) | PHAGE_Entero_SfV: tail protein; YPC_2955; phage(gi19549006) | 3e-32 | Click |
| 9 | complement(2862610..2864016) | PHAGE_Entero_SfV: tail/DNA circulation protein; YPC_2956; phage(gi19549005) | 3e-20 | Click |
| 10 | complement(2864041..2864247) | hypothetical protein; YPC_2957 | N/A | Click |
| 11 | complement(2864283..2865776) | putative bacteriophage coat protein; YPC_2958 | N/A | Click |
| 12 | complement(2865897..2866196) | hypothetical protein; YPC_2959 | N/A | Click |
| 13 | complement(2866198..2866566) | PHAGE_Entero_SfV: hypothetical protein SfVp12; YPC_2960; phage(gi19549002) | 2e-10 | Click |
| 14 | complement(2866588..2866794) | PHAGE_Entero_SfV: tail sheath protein; YPC_2961; phage(gi19549001) | 4e-11 | Click |
| 15 | complement(2866791..2868095) | PHAGE_Entero_SfV: tail sheath protein; YPC_2962; phage(gi19549001) | 6e-85 | Click |
| 16 | complement(2868092..2868286) | PHAGE_Entero_SfV: hypothetical protein SfVp10; YPC_2963; phage(gi19549000) | 1e-06 | Click |
| 17 | complement(2868291..2868908) | putative ATP-binding protein; YPC_2964 | N/A | Click |
| 18 | complement(2868954..2869244) | PHAGE_Salmon_SPN3UB: hypothetical protein; YPC_2965; phage(gi423262443) | 7e-16 | Click |
Region 5, total : 14 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(4222385..4223047) | PHAGE_Strept_phiC31: gp26; YPC_4360; phage(gi40807292) | 3e-05 | Click |
| 2 | complement(4223137..4224501) | PHAGE_Burkho_phi1026b: gp59; YPC_4361; phage(gi38707949) | 1e-21 | Click |
| 3 | complement(4224655..4225050) | putative gamma carboxymuconolactone decarboxylase; YPC_4362 | N/A | Click |
| 4 | complement(4225228..4226118) | PHAGE_Synech_S_SM1: 6-phosphogluconate dehydrogenase; YPC_4363; phage(gi326782617) | 5e-11 | Click |
| 5 | complement(4226183..4226995) | hypothetical protein; YPC_4364 | N/A | Click |
| 6 | 4227471..4227938 | PHAGE_Escher_TL_2011b: putative outer membrane lipoprotein; YPC_4365; phage(gi418487638) | 2e-08 | Click |
| 7 | complement(4228029..4228226) | hypothetical protein; YPC_4366 | N/A | Click |
| 8 | 4228471..4228683 | PHAGE_Lactoc_bIL312: Csp; YPC_4367; phage(gi13095918) | 3e-17 | Click |
| 9 | 4228943..4229155 | PHAGE_Lactoc_bIL312: Csp; YPC_4368; phage(gi13095918) | 4e-17 | Click |
| 10 | complement(4229338..4229847) | PHAGE_Hypert_2: IS element Dka2 orfA; YPC_4369; phage(gi300116744) | 5e-15 | Click |
| 11 | 4230201..4231376 | PHAGE_Clostr_phiCD38_2: tail tape measure; YPC_4371; phage(gi333798123) | 7e-05 | Click |
| 12 | complement(4231483..4232829) | putative exported protein; YPC_4372 | N/A | Click |
| 13 | 4233083..4233934 | putative glutathionylspermidine-utilizing glutathione transferase; YPC_4373 | N/A | Click |
| 14 | complement(4234124..4234729) | PHAGE_Acinet_Ac42: hypothetical protein; YPC_4374; phage(gi311992578) | 7e-19 | Click |