Definition Lactobacillus rhamnosus ATCC 53103 DNA, complete genome.
Accession AP011548
Length 3,005,051
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 57 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1099130..1099167  attL    TTTGAAATAAGGTAAATAAAGAGCTCCAGAATCATGTT  N/A  Click
2 complement(1099238..1100422)  PROPHAGE_Oceano_HTE831: integrase; LRHM_1038; phage(gi23097608)  3e-34  Click
3 complement(1100767..1101768)  hypothetical protein; LRHM_1039  N/A  Click
4 complement(1101879..1102082)  conserved hypothetical protein; LRHM_1040  N/A  Click
5 complement(1102106..1102477)  conserved hypothetical protein; LRHM_1041  N/A  Click
6 complement(1103136..1103891)  hypothetical protein; LRHM_1042  N/A  Click
7 complement(1103998..1104699)  PHAGE_Lactob_Lj771: hypothetical protein LJ771_002; LRHM_1043; phage(gi163932154)  1e-30  Click
8 complement(1104759..1105181)  PHAGE_Lactob_LF1: Lj965 prophage repressor-like protein; LRHM_1044; phage(gi418489418)  2e-16  Click
9 complement(1105171..1105506)  PHAGE_Clostr_CD119: RepR; putative repressor; LRHM_1045; phage(gi90592681)  5e-16  Click
10 1105644..1105886  PHAGE_Geobac_GBSV1: repressor protein; LRHM_1046; phage(gi115334659)  1e-09  Click
11 complement(1106128..1106355)  hypothetical protein; LRHM_1047  N/A  Click
12 1106443..1106601  hypothetical protein; LRHM_1048  N/A  Click
13 1106667..1107215  hypothetical protein; LRHM_1049  N/A  Click
14 1107287..1107424  hypothetical protein; LRHM_1050  N/A  Click
15 1107428..1107556  conserved hypothetical protein; LRHM_1051  N/A  Click
16 1107568..1107795  conserved hypothetical protein; LRHM_1052  N/A  Click
17 1108002..1108877  PHAGE_Strept_1: hypothetical protein EJ-1p21; LRHM_1053; phage(gi39653695)  3e-63  Click
18 1108897..1109661  PHAGE_Strept_3: hypothetical protein SpyM3_1132; LRHM_1054; phage(gi28876302)  1e-56  Click
19 1109677..1110633  PHAGE_Lister_A118: gp49; LRHM_1055; phage(gi16798836)  3e-20  Click
20 1110646..1111131  PHAGE_Strept_5093: single-stranded DNA binding protein; LRHM_1056; phage(gi238801886)  8e-43  Click
21 1111149..1111364  PHAGE_Lactob_Lj928: hypothetical protein Ljo_1453; LRHM_1057; phage(gi41179300)  4e-08  Click
22 1111922..1112371  PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp40; LRHM_1058; phage(gi195661240)  8e-73  Click
23 1112418..1112672  PHAGE_Lactob_Nu: hypothetical protein; LRHM_1059; phage(gi78000011)  2e-36  Click
24 1112669..1113070  PHAGE_Lactob_Nu: putative Holliday junction resolvase; LRHM_1060; phage(gi78000012)  4e-53  Click
25 1113083..1113547  PHAGE_Lactob_phiAT3: putative endonuclease; LRHM_1061; phage(gi48697295)  1e-31  Click
26 1113559..1113744  PHAGE_Lactob_phiAT3: hypothetical protein phiAT3gORF36; LRHM_1062; phage(gi48697296)  3e-27  Click
27 1113741..1114247  PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp44; LRHM_1063; phage(gi195661244)  2e-31  Click
28 1114596..1115027  PHAGE_Lactob_1: hypothetical protein lb338_phage_38; LRHM_1064; phage(gi226377668)  7e-52  Click
29 1115383..1115622  hypothetical protein; LRHM_1065  N/A  Click
30 1116149..1116577  hypothetical protein; LRHM_1066  N/A  Click
31 1117605..1118753  PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp50; LRHM_1067; phage(gi195661250)  0.0  Click
32 1118766..1119308  PHAGE_Lactob_Lrm1: endonuclease; LRHM_1068; phage(gi195661251)  5e-109  Click
33 1119460..1119621  PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp52; LRHM_1069; phage(gi195661252)  4e-19  Click
34 1119658..1120191  PHAGE_Lactob_phig1e: putative terminase small subunit; LRHM_1070; phage(gi23455798)  8e-37  Click
35 1120184..1121524  PHAGE_Lactob_H: putative terminase large subunit; LRHM_1071; phage(gi148750837)  2e-151  Click
36 1121529..1122956  PHAGE_Lactoc_ul36: putative portal protein; LRHM_1072; phage(gi21716109)  3e-85  Click
37 1122922..1123914  PHAGE_Lactob_Lj928: hypothetical protein Ljo_1437; LRHM_1073; phage(gi41179316)  7e-51  Click
38 1124039..1124695  PHAGE_Staphy_StB27: scaffold protein; LRHM_1074; phage(gi431809709)  1e-21  Click
39 1124711..1125724  PHAGE_Lactob_phig1e: minor capsid protein; LRHM_1075; phage(gi23455804)  1e-52  Click
40 1125952..1126326  PHAGE_Lactob_Lj928: hypothetical protein Ljo_1432; LRHM_1076; phage(gi41179321)  2e-15  Click
41 1126331..1126633  PHAGE_Lactoc_ul36: hypothetical protein ul36_45; LRHM_1077; phage(gi21716116)  4e-07  Click
42 1126672..1126995  PHAGE_Lactoc_Tuc2009: hypothetical protein Tuc2009_41; LRHM_1078; phage(gi13487842)  7e-13  Click
43 1126996..1127400  PHAGE_Strept_858: orf15; LRHM_1079; phage(gi168229288)  2e-14  Click
44 1127412..1128014  PHAGE_Lactoc_ul36: major tail protein; LRHM_1080; phage(gi21716118)  2e-13  Click
45 1128101..1128433  PHAGE_Entero_phiEf11: putative phage protein; LRHM_1081; phage(gi282598743)  2e-21  Click
46 1128565..1128891  PHAGE_Lactoc_ul36: hypothetical protein ul36_49; LRHM_1082; phage(gi21716120)  4e-06  Click
47 1128884..1131973  PHAGE_Entero_phiFL1A: PblA-like tail protein; LRHM_1083; phage(gi281416377)  5e-89  Click
48 1132042..1133964  PHAGE_Lactob_Lrm1: tail component; LRHM_1084; phage(gi195661214)  0.0  Click
49 1133964..1136471  PHAGE_Lactob_Lrm1: host specificity protein; LRHM_1085; phage(gi195661215)  0.0  Click
50 1136481..1136804  PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp16; LRHM_1086; phage(gi195661216)  6e-55  Click
51 1136797..1136928  hypothetical phage protein; LRHM_1087  N/A  Click
52 1136958..1137251  PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp17; LRHM_1088; phage(gi195661217)  1e-47  Click
53 1137241..1137654  PHAGE_Lactob_A2: holin; LRHM_1089; phage(gi22296539)  5e-62  Click
54 1137665..1138963  PHAGE_Lactob_Lrm1: lysin; LRHM_1090; phage(gi195661219)  0.0  Click
55 1139254..1139291  attR    TTTGAAATAAGGTAAATAAAGAGCTCCAGAATCATGTT  N/A  Click
56 1139287..1139418  hypothetical protein; LRHM_1091  N/A  Click
57 complement(1139583..1139870)  conserved hypothetical protein; LRHM_1092  N/A  Click
58 complement(1140166..1140906)  PHAGE_Strept_3: putative mitogenic factor; LRHM_1093; phage(gi28876265)  2e-13  Click
59 complement(1141017..1141760)  PHAGE_Entero_HK629: tail fiber protein; LRHM_1094; phage(gi428782034)  5e-08  Click
Region 2, total : 23 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1525275..1525286  attL    CTCATGTTATCT  N/A  Click
2 complement(1525338..1526507)  PROPHAGE_Oceano_HTE831: integrase; LRHM_1455; phage(gi23097608)  3e-47  Click
3 complement(1527712..1528098)  hypothetical protein; LRHM_1456  N/A  Click
4 complement(1528289..1529443)  PHAGE_Lactob_Nu: putative lysin; LRHM_1457; phage(gi78000035)  6e-86  Click
5 complement(1529446..1529778)  PHAGE_Lactob_Nu: putative holin; LRHM_1458; phage(gi78000034)  5e-35  Click
6 complement(1529791..1530006)  putative phage holin; LRHM_1459  N/A  Click
7 complement(1530049..1530180)  hypothetical phage protein; LRHM_1460  N/A  Click
8 complement(1530173..1530496)  PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp16; LRHM_1461; phage(gi195661216)  3e-55  Click
9 complement(1530506..1533439)  PHAGE_Lactob_Nu: putative host specificity protein; LRHM_1462; phage(gi77999995)  0.0  Click
10 complement(1533445..1535502)  PHAGE_Lactob_Nu: putative tail component; LRHM_1463; phage(gi78000032)  5e-104  Click
11 complement(1535503..1539678)  PHAGE_Lactob_Nu: putative tape measure protein; LRHM_1464; phage(gi78000025)  0.0  Click
12 complement(1539675..1539830)  PHAGE_Strept_YMC_2011: hypothetical protein; LRHM_1465; phage(gi399498730)  9e-05  Click
13 complement(1539883..1540233)  PHAGE_Lactob_Nu: putative tail component; LRHM_1466; phage(gi78000031)  1e-56  Click
14 complement(1540388..1541023)  PHAGE_Lactob_Nu: major tail protein; LRHM_1467; phage(gi78000030)  2e-98  Click
15 complement(1541024..1541377)  PHAGE_Lactob_Nu: putative tail component; LRHM_1468; phage(gi77999994)  3e-55  Click
16 complement(1541401..1541820)  PHAGE_Lactob_Nu: putative head-tail joining protein; LRHM_1469; phage(gi77999993)  7e-62  Click
17 complement(1541823..1542005)  PHAGE_Lactob_Nu: putative head-tail joining protein; LRHM_1470; phage(gi77999992)  3e-25  Click
18 complement(1542157..1542447)  hypothetical phage protein; LRHM_1471  N/A  Click
19 complement(1542519..1544447)  PHAGE_Lactob_1: protease-scaffold-major head protein; LRHM_1472; phage(gi219563201)  7e-70  Click
20 complement(1544447..1545196)  PHAGE_Lactob_Nu: putative portal protein; LRHM_1473; phage(gi78000027)  2e-31  Click
21 complement(1545850..1547742)  PHAGE_Lactob_1: terminase large subunit; LRHM_1474; phage(gi219563199)  8e-164  Click
22 complement(1547736..1548200)  PHAGE_Lactob_1: terminase small subunit; LRHM_1475; phage(gi219563198)  8e-27  Click
23 1549648..1550397  PHAGE_Parame_1: hypothetical protein; LRHM_1476; phage(gi9632040)  2e-05  Click
24 1550463..1551959  PROPHAGE_Xantho_33913: IS1478 transposase; LRHM_1477; phage(gi77747808)  7e-19  Click
25 1559512..1559523  attR    CTCATGTTATCT  N/A  Click
Region 3, total : 10 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(2219907..2221439)  PHAGE_Iodoba_phiPLPE: gp77 putative tail-fiber protein; LRHM_2074; phage(gi197085691)  4e-13  Click
2 complement(2221423..2221836)  conserved hypothetical protein; LRHM_2075  N/A  Click
3 complement(2222065..2222667)  truncated PTS system fructose-specific IIBC components; LRHM_2076  N/A  Click
4 complement(2222715..2223212)  PROPHAGE_Xantho_33913: IS1480 transposase; LRHM_2077; phage(gi21231089)  6e-42  Click
5 complement(2223182..2223409)  PROPHAGE_Shewan_MR-1: ISSod6, transposase; LRHM_2078; phage(gi24374783)  2e-07  Click
6 complement(2223558..2223983)  truncated PTS system fructose-specific IIBC components; LRHM_2079  N/A  Click
7 complement(2223997..2224989)  PHAGE_Parame_1: hypothetical protein; LRHM_2080; phage(gi9631622)  2e-45  Click
8 complement(2225038..2226201)  aromatic amino acid aminotransferase; LRHM_2081  N/A  Click
9 2226605..2226832  PROPHAGE_Shewan_MR-1: ISSod6, transposase; LRHM_2082; phage(gi24374783)  2e-07  Click
10 2226802..2227299  PROPHAGE_Xantho_33913: IS1480 transposase; LRHM_2083; phage(gi21231089)  6e-42  Click
Region 4, total : 23 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2943899..2943913  attL    TGGGTGGTCAGGGGA  N/A  Click
2 complement(2944011..2945168)  PROPHAGE_Oceano_HTE831: integrase; LRHM_2779; phage(gi23097608)  4e-56  Click
3 complement(2945286..2945897)  PHAGE_Lactoc_bIL311: repressor; LRHM_2780; phage(gi13095660)  2e-12  Click
4 2946249..2946524  hypothetical phage protein; LRHM_2781  N/A  Click
5 2946592..2946813  hypothetical protein; LRHM_2782  N/A  Click
6 2946924..2947115  hypothetical protein; LRHM_2783  N/A  Click
7 2947160..2947432  hypothetical protein; LRHM_2784  N/A  Click
8 2947601..2948428  PHAGE_Lactoc_bIL310: hypothetical protein bIL310p24; LRHM_2785; phage(gi13095885)  2e-22  Click
9 2948421..2949845  PHAGE_Staphy_2638A: ORF003; LRHM_2786; phage(gi66395453)  2e-66  Click
10 2950125..2950547  PHAGE_Strept_2: hypothetical protein SpyM3_0956; LRHM_2787; phage(gi28876240)  9e-20  Click
11 2950584..2951003  PHAGE_Staphy_phiPV83: phi PVL ORF 63 homologue; LRHM_2788; phage(gi9635713)  9e-18  Click
12 2951128..2951598  PHAGE_Staphy_phiPV83: phi PVL ORF 1 homologue; LRHM_2789; phage(gi9635714)  2e-18  Click
13 2951595..2953298  PHAGE_Lactob_LF1: bacteriophage terminase large subunit; LRHM_2790; phage(gi418489385)  4e-122  Click
14 2953448..2954632  PHAGE_Entero_1: portal protein; LRHM_2791; phage(gi225626395)  8e-52  Click
15 2954619..2956178  PHAGE_Entero_1: major capsid protein; LRHM_2792; phage(gi225626393)  1e-42  Click
16 2956240..2956530  PHAGE_Entero_1: head-tail joining protein; LRHM_2793; phage(gi225626391)  4e-09  Click
17 2956640..2956855  PHAGE_Entero_1: head-tail adaptor protein; LRHM_2794; phage(gi225626390)  6e-09  Click
18 2957151..2957288  hypothetical protein; LRHM_2795  N/A  Click
19 complement(2957374..2957514)  conserved hypothetical protein; LRHM_2796  N/A  Click
20 complement(2957530..2957778)  conserved hypothetical protein; LRHM_2797  N/A  Click
21 complement(2958028..2958100)  tRNA  N/A  Click
22 2958028..2958042  attR    TGGGTGGTCAGGGGA  N/A  Click
23 complement(2958306..2959226)  PHAGE_Cronob_vB_CsaP_GAP52: putative ribose-phosphate pyrophosphokinase; LRHM_2798; phage(gi414087562)  1e-20  Click
24 2959427..2960356  putative cell surface hydrolase; LRHM_2799  N/A  Click
25 complement(2960524..2961477)  PHAGE_Mycoba_Omega: gp105; LRHM_2800; phage(gi29566839)  1e-06  Click
26 complement(2961599..2962753)  PHAGE_Microm_MpV1: hypothetical protein; LRHM_2801; phage(gi313768442)  1e-11  Click