Definition | Lactobacillus rhamnosus ATCC 53103 DNA, complete genome. |
---|---|
Accession | AP011548 |
Length | 3,005,051 |
Legend
Hits against Virus and prophage DB | |
Hits against Bacterial DB or GenBank file |
Region 1, total : 57 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1099130..1099167 | attL TTTGAAATAAGGTAAATAAAGAGCTCCAGAATCATGTT | N/A | Click |
2 | complement(1099238..1100422) | PROPHAGE_Oceano_HTE831: integrase; LRHM_1038; phage(gi23097608) | 3e-34 | Click |
3 | complement(1100767..1101768) | hypothetical protein; LRHM_1039 | N/A | Click |
4 | complement(1101879..1102082) | conserved hypothetical protein; LRHM_1040 | N/A | Click |
5 | complement(1102106..1102477) | conserved hypothetical protein; LRHM_1041 | N/A | Click |
6 | complement(1103136..1103891) | hypothetical protein; LRHM_1042 | N/A | Click |
7 | complement(1103998..1104699) | PHAGE_Lactob_Lj771: hypothetical protein LJ771_002; LRHM_1043; phage(gi163932154) | 1e-30 | Click |
8 | complement(1104759..1105181) | PHAGE_Lactob_LF1: Lj965 prophage repressor-like protein; LRHM_1044; phage(gi418489418) | 2e-16 | Click |
9 | complement(1105171..1105506) | PHAGE_Clostr_CD119: RepR; putative repressor; LRHM_1045; phage(gi90592681) | 5e-16 | Click |
10 | 1105644..1105886 | PHAGE_Geobac_GBSV1: repressor protein; LRHM_1046; phage(gi115334659) | 1e-09 | Click |
11 | complement(1106128..1106355) | hypothetical protein; LRHM_1047 | N/A | Click |
12 | 1106443..1106601 | hypothetical protein; LRHM_1048 | N/A | Click |
13 | 1106667..1107215 | hypothetical protein; LRHM_1049 | N/A | Click |
14 | 1107287..1107424 | hypothetical protein; LRHM_1050 | N/A | Click |
15 | 1107428..1107556 | conserved hypothetical protein; LRHM_1051 | N/A | Click |
16 | 1107568..1107795 | conserved hypothetical protein; LRHM_1052 | N/A | Click |
17 | 1108002..1108877 | PHAGE_Strept_1: hypothetical protein EJ-1p21; LRHM_1053; phage(gi39653695) | 3e-63 | Click |
18 | 1108897..1109661 | PHAGE_Strept_3: hypothetical protein SpyM3_1132; LRHM_1054; phage(gi28876302) | 1e-56 | Click |
19 | 1109677..1110633 | PHAGE_Lister_A118: gp49; LRHM_1055; phage(gi16798836) | 3e-20 | Click |
20 | 1110646..1111131 | PHAGE_Strept_5093: single-stranded DNA binding protein; LRHM_1056; phage(gi238801886) | 8e-43 | Click |
21 | 1111149..1111364 | PHAGE_Lactob_Lj928: hypothetical protein Ljo_1453; LRHM_1057; phage(gi41179300) | 4e-08 | Click |
22 | 1111922..1112371 | PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp40; LRHM_1058; phage(gi195661240) | 8e-73 | Click |
23 | 1112418..1112672 | PHAGE_Lactob_Nu: hypothetical protein; LRHM_1059; phage(gi78000011) | 2e-36 | Click |
24 | 1112669..1113070 | PHAGE_Lactob_Nu: putative Holliday junction resolvase; LRHM_1060; phage(gi78000012) | 4e-53 | Click |
25 | 1113083..1113547 | PHAGE_Lactob_phiAT3: putative endonuclease; LRHM_1061; phage(gi48697295) | 1e-31 | Click |
26 | 1113559..1113744 | PHAGE_Lactob_phiAT3: hypothetical protein phiAT3gORF36; LRHM_1062; phage(gi48697296) | 3e-27 | Click |
27 | 1113741..1114247 | PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp44; LRHM_1063; phage(gi195661244) | 2e-31 | Click |
28 | 1114596..1115027 | PHAGE_Lactob_1: hypothetical protein lb338_phage_38; LRHM_1064; phage(gi226377668) | 7e-52 | Click |
29 | 1115383..1115622 | hypothetical protein; LRHM_1065 | N/A | Click |
30 | 1116149..1116577 | hypothetical protein; LRHM_1066 | N/A | Click |
31 | 1117605..1118753 | PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp50; LRHM_1067; phage(gi195661250) | 0.0 | Click |
32 | 1118766..1119308 | PHAGE_Lactob_Lrm1: endonuclease; LRHM_1068; phage(gi195661251) | 5e-109 | Click |
33 | 1119460..1119621 | PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp52; LRHM_1069; phage(gi195661252) | 4e-19 | Click |
34 | 1119658..1120191 | PHAGE_Lactob_phig1e: putative terminase small subunit; LRHM_1070; phage(gi23455798) | 8e-37 | Click |
35 | 1120184..1121524 | PHAGE_Lactob_H: putative terminase large subunit; LRHM_1071; phage(gi148750837) | 2e-151 | Click |
36 | 1121529..1122956 | PHAGE_Lactoc_ul36: putative portal protein; LRHM_1072; phage(gi21716109) | 3e-85 | Click |
37 | 1122922..1123914 | PHAGE_Lactob_Lj928: hypothetical protein Ljo_1437; LRHM_1073; phage(gi41179316) | 7e-51 | Click |
38 | 1124039..1124695 | PHAGE_Staphy_StB27: scaffold protein; LRHM_1074; phage(gi431809709) | 1e-21 | Click |
39 | 1124711..1125724 | PHAGE_Lactob_phig1e: minor capsid protein; LRHM_1075; phage(gi23455804) | 1e-52 | Click |
40 | 1125952..1126326 | PHAGE_Lactob_Lj928: hypothetical protein Ljo_1432; LRHM_1076; phage(gi41179321) | 2e-15 | Click |
41 | 1126331..1126633 | PHAGE_Lactoc_ul36: hypothetical protein ul36_45; LRHM_1077; phage(gi21716116) | 4e-07 | Click |
42 | 1126672..1126995 | PHAGE_Lactoc_Tuc2009: hypothetical protein Tuc2009_41; LRHM_1078; phage(gi13487842) | 7e-13 | Click |
43 | 1126996..1127400 | PHAGE_Strept_858: orf15; LRHM_1079; phage(gi168229288) | 2e-14 | Click |
44 | 1127412..1128014 | PHAGE_Lactoc_ul36: major tail protein; LRHM_1080; phage(gi21716118) | 2e-13 | Click |
45 | 1128101..1128433 | PHAGE_Entero_phiEf11: putative phage protein; LRHM_1081; phage(gi282598743) | 2e-21 | Click |
46 | 1128565..1128891 | PHAGE_Lactoc_ul36: hypothetical protein ul36_49; LRHM_1082; phage(gi21716120) | 4e-06 | Click |
47 | 1128884..1131973 | PHAGE_Entero_phiFL1A: PblA-like tail protein; LRHM_1083; phage(gi281416377) | 5e-89 | Click |
48 | 1132042..1133964 | PHAGE_Lactob_Lrm1: tail component; LRHM_1084; phage(gi195661214) | 0.0 | Click |
49 | 1133964..1136471 | PHAGE_Lactob_Lrm1: host specificity protein; LRHM_1085; phage(gi195661215) | 0.0 | Click |
50 | 1136481..1136804 | PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp16; LRHM_1086; phage(gi195661216) | 6e-55 | Click |
51 | 1136797..1136928 | hypothetical phage protein; LRHM_1087 | N/A | Click |
52 | 1136958..1137251 | PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp17; LRHM_1088; phage(gi195661217) | 1e-47 | Click |
53 | 1137241..1137654 | PHAGE_Lactob_A2: holin; LRHM_1089; phage(gi22296539) | 5e-62 | Click |
54 | 1137665..1138963 | PHAGE_Lactob_Lrm1: lysin; LRHM_1090; phage(gi195661219) | 0.0 | Click |
55 | 1139254..1139291 | attR TTTGAAATAAGGTAAATAAAGAGCTCCAGAATCATGTT | N/A | Click |
56 | 1139287..1139418 | hypothetical protein; LRHM_1091 | N/A | Click |
57 | complement(1139583..1139870) | conserved hypothetical protein; LRHM_1092 | N/A | Click |
58 | complement(1140166..1140906) | PHAGE_Strept_3: putative mitogenic factor; LRHM_1093; phage(gi28876265) | 2e-13 | Click |
59 | complement(1141017..1141760) | PHAGE_Entero_HK629: tail fiber protein; LRHM_1094; phage(gi428782034) | 5e-08 | Click |
Region 2, total : 23 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1525275..1525286 | attL CTCATGTTATCT | N/A | Click |
2 | complement(1525338..1526507) | PROPHAGE_Oceano_HTE831: integrase; LRHM_1455; phage(gi23097608) | 3e-47 | Click |
3 | complement(1527712..1528098) | hypothetical protein; LRHM_1456 | N/A | Click |
4 | complement(1528289..1529443) | PHAGE_Lactob_Nu: putative lysin; LRHM_1457; phage(gi78000035) | 6e-86 | Click |
5 | complement(1529446..1529778) | PHAGE_Lactob_Nu: putative holin; LRHM_1458; phage(gi78000034) | 5e-35 | Click |
6 | complement(1529791..1530006) | putative phage holin; LRHM_1459 | N/A | Click |
7 | complement(1530049..1530180) | hypothetical phage protein; LRHM_1460 | N/A | Click |
8 | complement(1530173..1530496) | PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp16; LRHM_1461; phage(gi195661216) | 3e-55 | Click |
9 | complement(1530506..1533439) | PHAGE_Lactob_Nu: putative host specificity protein; LRHM_1462; phage(gi77999995) | 0.0 | Click |
10 | complement(1533445..1535502) | PHAGE_Lactob_Nu: putative tail component; LRHM_1463; phage(gi78000032) | 5e-104 | Click |
11 | complement(1535503..1539678) | PHAGE_Lactob_Nu: putative tape measure protein; LRHM_1464; phage(gi78000025) | 0.0 | Click |
12 | complement(1539675..1539830) | PHAGE_Strept_YMC_2011: hypothetical protein; LRHM_1465; phage(gi399498730) | 9e-05 | Click |
13 | complement(1539883..1540233) | PHAGE_Lactob_Nu: putative tail component; LRHM_1466; phage(gi78000031) | 1e-56 | Click |
14 | complement(1540388..1541023) | PHAGE_Lactob_Nu: major tail protein; LRHM_1467; phage(gi78000030) | 2e-98 | Click |
15 | complement(1541024..1541377) | PHAGE_Lactob_Nu: putative tail component; LRHM_1468; phage(gi77999994) | 3e-55 | Click |
16 | complement(1541401..1541820) | PHAGE_Lactob_Nu: putative head-tail joining protein; LRHM_1469; phage(gi77999993) | 7e-62 | Click |
17 | complement(1541823..1542005) | PHAGE_Lactob_Nu: putative head-tail joining protein; LRHM_1470; phage(gi77999992) | 3e-25 | Click |
18 | complement(1542157..1542447) | hypothetical phage protein; LRHM_1471 | N/A | Click |
19 | complement(1542519..1544447) | PHAGE_Lactob_1: protease-scaffold-major head protein; LRHM_1472; phage(gi219563201) | 7e-70 | Click |
20 | complement(1544447..1545196) | PHAGE_Lactob_Nu: putative portal protein; LRHM_1473; phage(gi78000027) | 2e-31 | Click |
21 | complement(1545850..1547742) | PHAGE_Lactob_1: terminase large subunit; LRHM_1474; phage(gi219563199) | 8e-164 | Click |
22 | complement(1547736..1548200) | PHAGE_Lactob_1: terminase small subunit; LRHM_1475; phage(gi219563198) | 8e-27 | Click |
23 | 1549648..1550397 | PHAGE_Parame_1: hypothetical protein; LRHM_1476; phage(gi9632040) | 2e-05 | Click |
24 | 1550463..1551959 | PROPHAGE_Xantho_33913: IS1478 transposase; LRHM_1477; phage(gi77747808) | 7e-19 | Click |
25 | 1559512..1559523 | attR CTCATGTTATCT | N/A | Click |
Region 3, total : 10 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | complement(2219907..2221439) | PHAGE_Iodoba_phiPLPE: gp77 putative tail-fiber protein; LRHM_2074; phage(gi197085691) | 4e-13 | Click |
2 | complement(2221423..2221836) | conserved hypothetical protein; LRHM_2075 | N/A | Click |
3 | complement(2222065..2222667) | truncated PTS system fructose-specific IIBC components; LRHM_2076 | N/A | Click |
4 | complement(2222715..2223212) | PROPHAGE_Xantho_33913: IS1480 transposase; LRHM_2077; phage(gi21231089) | 6e-42 | Click |
5 | complement(2223182..2223409) | PROPHAGE_Shewan_MR-1: ISSod6, transposase; LRHM_2078; phage(gi24374783) | 2e-07 | Click |
6 | complement(2223558..2223983) | truncated PTS system fructose-specific IIBC components; LRHM_2079 | N/A | Click |
7 | complement(2223997..2224989) | PHAGE_Parame_1: hypothetical protein; LRHM_2080; phage(gi9631622) | 2e-45 | Click |
8 | complement(2225038..2226201) | aromatic amino acid aminotransferase; LRHM_2081 | N/A | Click |
9 | 2226605..2226832 | PROPHAGE_Shewan_MR-1: ISSod6, transposase; LRHM_2082; phage(gi24374783) | 2e-07 | Click |
10 | 2226802..2227299 | PROPHAGE_Xantho_33913: IS1480 transposase; LRHM_2083; phage(gi21231089) | 6e-42 | Click |
Region 4, total : 23 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 2943899..2943913 | attL TGGGTGGTCAGGGGA | N/A | Click |
2 | complement(2944011..2945168) | PROPHAGE_Oceano_HTE831: integrase; LRHM_2779; phage(gi23097608) | 4e-56 | Click |
3 | complement(2945286..2945897) | PHAGE_Lactoc_bIL311: repressor; LRHM_2780; phage(gi13095660) | 2e-12 | Click |
4 | 2946249..2946524 | hypothetical phage protein; LRHM_2781 | N/A | Click |
5 | 2946592..2946813 | hypothetical protein; LRHM_2782 | N/A | Click |
6 | 2946924..2947115 | hypothetical protein; LRHM_2783 | N/A | Click |
7 | 2947160..2947432 | hypothetical protein; LRHM_2784 | N/A | Click |
8 | 2947601..2948428 | PHAGE_Lactoc_bIL310: hypothetical protein bIL310p24; LRHM_2785; phage(gi13095885) | 2e-22 | Click |
9 | 2948421..2949845 | PHAGE_Staphy_2638A: ORF003; LRHM_2786; phage(gi66395453) | 2e-66 | Click |
10 | 2950125..2950547 | PHAGE_Strept_2: hypothetical protein SpyM3_0956; LRHM_2787; phage(gi28876240) | 9e-20 | Click |
11 | 2950584..2951003 | PHAGE_Staphy_phiPV83: phi PVL ORF 63 homologue; LRHM_2788; phage(gi9635713) | 9e-18 | Click |
12 | 2951128..2951598 | PHAGE_Staphy_phiPV83: phi PVL ORF 1 homologue; LRHM_2789; phage(gi9635714) | 2e-18 | Click |
13 | 2951595..2953298 | PHAGE_Lactob_LF1: bacteriophage terminase large subunit; LRHM_2790; phage(gi418489385) | 4e-122 | Click |
14 | 2953448..2954632 | PHAGE_Entero_1: portal protein; LRHM_2791; phage(gi225626395) | 8e-52 | Click |
15 | 2954619..2956178 | PHAGE_Entero_1: major capsid protein; LRHM_2792; phage(gi225626393) | 1e-42 | Click |
16 | 2956240..2956530 | PHAGE_Entero_1: head-tail joining protein; LRHM_2793; phage(gi225626391) | 4e-09 | Click |
17 | 2956640..2956855 | PHAGE_Entero_1: head-tail adaptor protein; LRHM_2794; phage(gi225626390) | 6e-09 | Click |
18 | 2957151..2957288 | hypothetical protein; LRHM_2795 | N/A | Click |
19 | complement(2957374..2957514) | conserved hypothetical protein; LRHM_2796 | N/A | Click |
20 | complement(2957530..2957778) | conserved hypothetical protein; LRHM_2797 | N/A | Click |
21 | complement(2958028..2958100) | tRNA | N/A | Click |
22 | 2958028..2958042 | attR TGGGTGGTCAGGGGA | N/A | Click |
23 | complement(2958306..2959226) | PHAGE_Cronob_vB_CsaP_GAP52: putative ribose-phosphate pyrophosphokinase; LRHM_2798; phage(gi414087562) | 1e-20 | Click |
24 | 2959427..2960356 | putative cell surface hydrolase; LRHM_2799 | N/A | Click |
25 | complement(2960524..2961477) | PHAGE_Mycoba_Omega: gp105; LRHM_2800; phage(gi29566839) | 1e-06 | Click |
26 | complement(2961599..2962753) | PHAGE_Microm_MpV1: hypothetical protein; LRHM_2801; phage(gi313768442) | 1e-11 | Click |