Definition Lactococcus garvieae Lg2 DNA, complete genome.
Accession AP009333
Length 1,963,964
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 14 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 898104..899375  PHAGE_Plankt_PaV_LD: ABC transporter; LCGL_0869; phage(gi371496158)  7e-25  Click
2 899304..899316  attL    ACGGAGTTAGCGC  N/A  Click
3 899372..900166  spermidine/putrescine ABC transporter permease component; LCGL_0870  N/A  Click
4 900166..900966  spermidine/putrescine ABC transporter permease component; LCGL_0871  N/A  Click
5 900982..902049  spermidine/putrescine ABC transporter substrate-binding component; LCGL_0872  N/A  Click
6 complement(902112..903248)  PHAGE_Lactoc_bIL309: integrase; LCGL_0873; phage(gi13095806)  5e-99  Click
7 complement(903404..903976)  PHAGE_Lactoc_r1t: hypothetical protein r1tp02; LCGL_0874; phage(gi23455721)  7e-13  Click
8 complement(904200..905063)  PROPHAGE_Escher_CFT073: transposase insF; LCGL_0875; phage(gi26250329)  2e-38  Click
9 complement(905066..905341)  PHAGE_Lactob_phiAT3: putative transposase A; LCGL_0876; phage(gi48697273)  3e-11  Click
10 905540..905770  PHAGE_Lactoc_r1t: Holin; LCGL_0877; phage(gi23455767)  3e-18  Click
11 905772..906521  hypothetical protein; LCGL_0878  N/A  Click
12 907048..907344  PHAGE_Lactoc_bIL311: Orf20; LCGL_0879; phage(gi13095678)  2e-42  Click
13 907356..908282  PHAGE_Lactoc_bIL311: Orf21; LCGL_0880; phage(gi13095679)  3e-119  Click
14 908895..908968  tRNA  N/A  Click
15 908933..908945  attR    ACGGAGTTAGCGC  N/A  Click
16 910124..910279  hypothetical protein; LCGL_0881  N/A  Click
17 910940..911521  PHAGE_Lactoc_949: putative transglycosylase; LCGL_0882; phage(gi327197847)  9e-33  Click
Region 2, total : 68 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1114842..1114856  attL    ATTTTCTAGATTTTA  N/A  Click
2 1119321..1119884  PHAGE_Lactoc_ul36: putative integrase; LCGL_1106; phage(gi21716073)  1e-09  Click
3 1119941..1120435  PHAGE_Lactoc_ul36: putative integrase; LCGL_1107; phage(gi21716073)  3e-73  Click
4 1120912..1120925  attL    TTTTCTTACTTATT  N/A  Click
5 complement(1121166..1121239)  tRNA  N/A  Click
6 complement(1121979..1122170)  hypothetical protein; LCGL_1108  N/A  Click
7 1122305..1122430  hypothetical protein; LCGL_1109  N/A  Click
8 1122423..1122605  conserved hypothetical protein; LCGL_1110  N/A  Click
9 complement(1122720..1122842)  hypothetical protein; LCGL_1111  N/A  Click
10 complement(1123735..1123989)  hypothetical protein; LCGL_1112  N/A  Click
11 complement(1124435..1125184)  hypothetical protein; LCGL_1113  N/A  Click
12 complement(1125186..1125416)  PHAGE_Lactoc_r1t: Holin; LCGL_1114; phage(gi23455767)  3e-17  Click
13 complement(1125429..1125650)  PHAGE_Lactoc_T: putative holin; LCGL_1115; phage(gi14251149)  6e-23  Click
14 complement(1125673..1126584)  PHAGE_Pseudo_1: virion structural protein; LCGL_1116; phage(gi189490371)  6e-11  Click
15 complement(1126556..1126720)  hypothetical protein; LCGL_1117  N/A  Click
16 complement(1126704..1129259)  PHAGE_Lactob_Lj965: hypothetical protein Ljo_0324; LCGL_1118; phage(gi41179262)  2e-86  Click
17 complement(1129269..1129634)  PHAGE_Lactob_Lj965: hypothetical protein Ljo_0323; LCGL_1119; phage(gi41179261)  9e-16  Click
18 complement(1129648..1134429)  PHAGE_Lactob_Lj965: putative putative minor tail protein; LCGL_1120; phage(gi41179260)  0.0  Click
19 complement(1134446..1134820)  PHAGE_Lactob_Lj965: hypothetical protein Ljo_0321; LCGL_1121; phage(gi41179259)  2e-11  Click
20 complement(1134844..1135248)  PHAGE_Lactob_Lj965: hypothetical protein Ljo_0320; LCGL_1122; phage(gi41179250)  7e-29  Click
21 complement(1135322..1135747)  PHAGE_Lactob_Lj965: putative major tail protein; LCGL_1123; phage(gi41179249)  2e-22  Click
22 complement(1135760..1136122)  PHAGE_Lactob_Lj965: hypothetical protein Ljo_0318; LCGL_1124; phage(gi41179248)  1e-16  Click
23 complement(1136122..1136670)  PHAGE_Lactob_Lj965: hypothetical protein Ljo_0317; LCGL_1125; phage(gi41179258)  4e-35  Click
24 complement(1136654..1137007)  PHAGE_Lactob_Lj965: hypothetical protein Ljo_0316; LCGL_1126; phage(gi41179247)  1e-26  Click
25 complement(1136988..1137320)  PHAGE_Lactob_Lj965: hypothetical protein Ljo_0315; LCGL_1127; phage(gi41179246)  4e-14  Click
26 complement(1137341..1138459)  PHAGE_Staphy_vB_SepiS_phiIPLA5: major head protein; LCGL_1128; phage(gi399528901)  4e-61  Click
27 complement(1138472..1139146)  PHAGE_Entero_phiFL3A: scaffold protein; LCGL_1129; phage(gi281416260)  4e-57  Click
28 complement(1139243..1139500)  PHAGE_Lactoc_ul36: hypothetical protein ul36_41; LCGL_1130; phage(gi21716112)  5e-30  Click
29 complement(1139564..1140091)  hypothetical protein; LCGL_1131  N/A  Click
30 complement(1140124..1141221)  PHAGE_Lactob_Lj965: putative minor head protein; LCGL_1132; phage(gi41179242)  4e-51  Click
31 complement(1141227..1141514)  PHAGE_Entero_phiFL3A: ribosomal protein; LCGL_1133; phage(gi281416258)  9e-16  Click
32 complement(1141633..1143141)  PHAGE_Lactob_Lj965: putative portal protein; LCGL_1134; phage(gi41179240)  2e-113  Click
33 complement(1143150..1144385)  PHAGE_Entero_phiFL1A: terminase large subunit; LCGL_1135; phage(gi281416362)  0.0  Click
34 complement(1144375..1144887)  PHAGE_Lactob_phig1e: putative terminase small subunit; LCGL_1136; phage(gi23455798)  2e-35  Click
35 complement(1145189..1145259)  tRNA  N/A  Click
36 complement(1145410..1145832)  PHAGE_Lactoc_1: ALT; LCGL_1137; phage(gi13786560)  7e-71  Click
37 complement(1146455..1146676)  PHAGE_Lactoc_949: hypothetical protein; LCGL_1138; phage(gi327197915)  3e-16  Click
38 complement(1146673..1146966)  hypothetical protein; LCGL_1139  N/A  Click
39 complement(1147012..1147704)  PHAGE_Lactoc_r1t: hypothetical protein r1tp22; LCGL_1140; phage(gi23455741)  6e-128  Click
40 complement(1147691..1148065)  hypothetical protein; LCGL_1141  N/A  Click
41 complement(1148062..1148439)  PHAGE_Entero_EF62phi: Phage related protein; LCGL_1142; phage(gi384519765)  7e-13  Click
42 complement(1148443..1148670)  hypothetical protein; LCGL_1143  N/A  Click
43 1148796..1149146  PHAGE_Lactoc_T: hypothetical protein BK5-Tp55; LCGL_1144; phage(gi14251178)  2e-30  Click
44 complement(1149035..1149205)  hypothetical protein; LCGL_1145  N/A  Click
45 complement(1149180..1149716)  PHAGE_Lactoc_ul36: hypothetical protein ul36_23; LCGL_1146; phage(gi21716094)  3e-42  Click
46 complement(1149709..1149903)  hypothetical protein; LCGL_1147  N/A  Click
47 complement(1149881..1150060)  hypothetical protein; LCGL_1148  N/A  Click
48 complement(1150060..1150404)  hypothetical protein; LCGL_1149  N/A  Click
49 complement(1150397..1150786)  PHAGE_Lactoc_phiLC3: hypothetical protein phiLC3p17; LCGL_1150; phage(gi45597406)  2e-05  Click
50 complement(1151364..1151768)  PHAGE_Lactoc_ul36: putative RusA-like resolvase; LCGL_1151; phage(gi21716088)  7e-43  Click
51 complement(1151765..1151914)  hypothetical protein; LCGL_1152  N/A  Click
52 complement(1151898..1152140)  hypothetical protein; LCGL_1153  N/A  Click
53 complement(1152127..1152948)  PHAGE_Lactoc_T: putative replication protein; LCGL_1154; phage(gi14251172)  1e-96  Click
54 complement(1152936..1153280)  PHAGE_Leucon_phiLN04: putative HNH endonuclease; LCGL_1155; phage(gi472437220)  7e-11  Click
55 complement(1153366..1153872)  PHAGE_Lactoc_T: putative single stranded DNA binding protein; LCGL_1156; phage(gi14251188)  2e-48  Click
56 complement(1153872..1154588)  PHAGE_Strept_2: nucleoside triphosphate binding motifs protein; LCGL_1157; phage(gi273809760)  3e-82  Click
57 complement(1154591..1155079)  PHAGE_Lister_A500: gp43; LCGL_1158; phage(gi157325002)  3e-30  Click
58 complement(1155163..1155318)  hypothetical protein; LCGL_1159  N/A  Click
59 1155421..1155918  hypothetical protein; LCGL_1160  N/A  Click
60 complement(1155896..1156162)  hypothetical protein; LCGL_1161  N/A  Click
61 complement(1156273..1156566)  PHAGE_Lactoc_bIL286: Orf7; LCGL_1162; phage(gi13095750)  3e-13  Click
62 complement(1156579..1157298)  PHAGE_Lactoc_Tuc2009: major structural protein; LCGL_1163; phage(gi13487806)  3e-115  Click
63 complement(1157317..1157460)  hypothetical protein; LCGL_1164  N/A  Click
64 complement(1157568..1157774)  hypothetical protein; LCGL_1165  N/A  Click
65 1158049..1158393  PHAGE_Lactoc_bIL310: immunity repressor; LCGL_1166; phage(gi13095874)  2e-24  Click
66 1158405..1158797  PHAGE_Lactoc_bIL312: Orf4; LCGL_1167; phage(gi13095895)  2e-30  Click
67 1158896..1159474  PHAGE_Strept_Sfi21: immunity region; LCGL_1168; phage(gi9632963)  1e-36  Click
68 1159599..1160681  PHAGE_Lactoc_bIL286: integrase; LCGL_1169; phage(gi13095744)  8e-160  Click
69 complement(1160836..1161189)  tRNA  N/A  Click
70 complement(1161235..1161984)  conserved hypothetical protein; LCGL_1170  N/A  Click
71 complement(1161981..1162868)  PHAGE_Amsact_: putative ATP-binding cassette transporter; LCGL_1171; phage(gi9964444)  2e-17  Click
72 complement(1163075..1163410)  conserved hypothetical protein; LCGL_1172  N/A  Click
73 1163586..1164284  PHAGE_Feldma_virus: putative sensor histidine kinase; LCGL_1173; phage(gi197322366)  2e-08  Click
74 1174656..1174669  attR    TTTTCTTACTTATT  N/A  Click
75 1177061..1177075  attR    ATTTTCTAGATTTTA  N/A  Click
Region 3, total : 8 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1378575..1378654  attL    TTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGTCCA  N/A  Click
2 complement(1381923..1383050)  PHAGE_Lactoc_bIL312: integrase; LCGL_1397; phage(gi13095892)  2e-50  Click
3 complement(1383091..1383297)  hypothetical protein; LCGL_1398  N/A  Click
4 complement(1383405..1383896)  PHAGE_Rhodoc_RER2: antirestriction protein; LCGL_1399; phage(gi372449960)  2e-09  Click
5 complement(1384014..1384535)  hypothetical protein; LCGL_1400  N/A  Click
6 complement(1384532..1385566)  PHAGE_Strept_5: putative tail protein; LCGL_1401; phage(gi28876393)  1e-12  Click
7 complement(1385568..1385960)  PHAGE_Human__8: LANA; LCGL_1402; phage(gi139472804)  3e-07  Click
8 1386056..1386331  PHAGE_Lactob_phiAT3: putative transposase A; LCGL_1403; phage(gi48697273)  3e-11  Click
9 1386334..1387197  PROPHAGE_Escher_CFT073: transposase insF; LCGL_1404; phage(gi26250329)  2e-38  Click
10 1387152..1387231  attR    TTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGTCCA  N/A  Click
Region 4, total : 18 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1769743..1769769  attL    AATTTATGACACTTTTTATGAACCTTT  N/A  Click
2 complement(1769776..1770966)  PHAGE_Lactoc_bIL310: integrase; LCGL_1798; phage(gi13095863)  8e-79  Click
3 complement(1771289..1772179)  conserved hypothetical protein; LCGL_1799  N/A  Click
4 complement(1772237..1772548)  PHAGE_Lactoc_bIL310: hypothetical protein bIL310p02; LCGL_1800; phage(gi13095864)  8e-17  Click
5 complement(1772570..1772806)  hypothetical protein; LCGL_1801  N/A  Click
6 complement(1772872..1773276)  PHAGE_Lactoc_bIL310: hypothetical protein bIL310p02; LCGL_1802; phage(gi13095864)  3e-12  Click
7 complement(1773500..1773748)  hypothetical protein; LCGL_1803  N/A  Click
8 complement(1774250..1774951)  PHAGE_Lactoc_bIL309: Orf32; LCGL_1804; phage(gi13095837)  2e-21  Click
9 1775103..1775324  hypothetical protein; LCGL_1805  N/A  Click
10 1775532..1776230  PHAGE_Lactoc_bIL310: anti-repressor; LCGL_1806; phage(gi13095876)  2e-16  Click
11 1776924..1777088  hypothetical protein; LCGL_1807  N/A  Click
12 1777072..1777353  PHAGE_Lactoc_bIL310: hypothetical protein bIL310p19; LCGL_1808; phage(gi13095880)  3e-05  Click
13 1777474..1777740  hypothetical protein; LCGL_1809  N/A  Click
14 1777740..1778069  PHAGE_Lactoc_bIL310: hypothetical protein bIL310p23; LCGL_1810; phage(gi13095884)  4e-27  Click
15 1778039..1779775  PHAGE_Lactoc_bIL311: Orf9; LCGL_1811; phage(gi13095667)  3e-143  Click
16 1780256..1781119  PHAGE_Lactoc_bIL310: hypothetical protein bIL310p26; LCGL_1812; phage(gi13095887)  8e-08  Click
17 1781176..1781355  PHAGE_Lactoc_bIL310: hypothetical protein bIL310p20; LCGL_1813; phage(gi13095881)  2e-05  Click
18 1781487..1781675  hypothetical protein; LCGL_1814  N/A  Click
19 1781921..1782433  PHAGE_Clostr_phi3626: putative prohead protease; LCGL_1815; phage(gi20065968)  6e-10  Click
20 1783274..1783300  attR    AATTTATGACACTTTTTATGAACCTTT  N/A  Click