Definition Lactococcus garvieae ATCC 49156 DNA, complete genome.
Accession AP009332
Length 1,950,135
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 14 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 879670..880941  PHAGE_Plankt_PaV_LD: ABC transporter; LCGT_0848; phage(gi371496158)  7e-25  Click
2 880870..880882  attL    ACGGAGTTAGCGC  N/A  Click
3 880938..881732  spermidine/putrescine ABC transporter permease component; LCGT_0849  N/A  Click
4 881732..882532  spermidine/putrescine ABC transporter permease component; LCGT_0850  N/A  Click
5 882548..883615  spermidine/putrescine ABC transporter substrate-binding component; LCGT_0851  N/A  Click
6 complement(883678..884814)  PHAGE_Lactoc_bIL309: integrase; LCGT_0852; phage(gi13095806)  5e-99  Click
7 complement(884970..885542)  PHAGE_Lactoc_r1t: hypothetical protein r1tp02; LCGT_0853; phage(gi23455721)  7e-13  Click
8 complement(885766..886629)  PROPHAGE_Escher_CFT073: transposase insF; LCGT_0854; phage(gi26250329)  2e-38  Click
9 complement(886632..886907)  PHAGE_Lactob_phiAT3: putative transposase A; LCGT_0855; phage(gi48697273)  3e-11  Click
10 887106..887336  PHAGE_Lactoc_r1t: Holin; LCGT_0856; phage(gi23455767)  3e-18  Click
11 887338..888087  hypothetical protein; LCGT_0857  N/A  Click
12 888614..888910  PHAGE_Lactoc_bIL311: Orf20; LCGT_0858; phage(gi13095678)  2e-42  Click
13 888922..889848  PHAGE_Lactoc_bIL311: Orf21; LCGT_0859; phage(gi13095679)  3e-119  Click
14 890461..890534  tRNA  N/A  Click
15 890499..890511  attR    ACGGAGTTAGCGC  N/A  Click
16 891690..891845  hypothetical protein; LCGT_0860  N/A  Click
17 892506..893087  PHAGE_Lactoc_949: putative transglycosylase; LCGT_0861; phage(gi327197847)  9e-33  Click
Region 2, total : 68 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1100783..1100797  attL    ATTTTCTAGATTTTA  N/A  Click
2 1105262..1105825  PHAGE_Lactoc_ul36: putative integrase; LCGT_1086; phage(gi21716073)  1e-09  Click
3 1105882..1106376  PHAGE_Lactoc_ul36: putative integrase; LCGT_1087; phage(gi21716073)  3e-73  Click
4 1106853..1106866  attL    TTTTCTTACTTATT  N/A  Click
5 complement(1107107..1107180)  tRNA  N/A  Click
6 complement(1107920..1108111)  hypothetical protein; LCGT_1088  N/A  Click
7 1108246..1108371  hypothetical protein; LCGT_1089  N/A  Click
8 1108364..1108546  conserved hypothetical protein; LCGT_1090  N/A  Click
9 complement(1108661..1108783)  hypothetical protein; LCGT_1091  N/A  Click
10 complement(1109676..1109930)  hypothetical protein; LCGT_1092  N/A  Click
11 complement(1110376..1111125)  hypothetical protein; LCGT_1093  N/A  Click
12 complement(1111127..1111357)  PHAGE_Lactoc_r1t: Holin; LCGT_1094; phage(gi23455767)  3e-17  Click
13 complement(1111370..1111591)  PHAGE_Lactoc_T: putative holin; LCGT_1095; phage(gi14251149)  6e-23  Click
14 complement(1111614..1112525)  PHAGE_Pseudo_1: virion structural protein; LCGT_1096; phage(gi189490371)  6e-11  Click
15 complement(1112497..1112661)  hypothetical protein; LCGT_1097  N/A  Click
16 complement(1112645..1115200)  PHAGE_Lactob_Lj965: hypothetical protein Ljo_0324; LCGT_1098; phage(gi41179262)  2e-86  Click
17 complement(1115210..1115575)  PHAGE_Lactob_Lj965: hypothetical protein Ljo_0323; LCGT_1099; phage(gi41179261)  9e-16  Click
18 complement(1115589..1120370)  PHAGE_Lactob_Lj965: putative putative minor tail protein; LCGT_1100; phage(gi41179260)  0.0  Click
19 complement(1120387..1120761)  PHAGE_Lactob_Lj965: hypothetical protein Ljo_0321; LCGT_1101; phage(gi41179259)  2e-11  Click
20 complement(1120785..1121189)  PHAGE_Lactob_Lj965: hypothetical protein Ljo_0320; LCGT_1102; phage(gi41179250)  7e-29  Click
21 complement(1121263..1121688)  PHAGE_Lactob_Lj965: putative major tail protein; LCGT_1103; phage(gi41179249)  2e-22  Click
22 complement(1121701..1122063)  PHAGE_Lactob_Lj965: hypothetical protein Ljo_0318; LCGT_1104; phage(gi41179248)  1e-16  Click
23 complement(1122063..1122611)  PHAGE_Lactob_Lj965: hypothetical protein Ljo_0317; LCGT_1105; phage(gi41179258)  4e-35  Click
24 complement(1122595..1122948)  PHAGE_Lactob_Lj965: hypothetical protein Ljo_0316; LCGT_1106; phage(gi41179247)  1e-26  Click
25 complement(1122929..1123261)  PHAGE_Lactob_Lj965: hypothetical protein Ljo_0315; LCGT_1107; phage(gi41179246)  4e-14  Click
26 complement(1123282..1124400)  PHAGE_Staphy_vB_SepiS_phiIPLA5: major head protein; LCGT_1108; phage(gi399528901)  4e-61  Click
27 complement(1124413..1125087)  PHAGE_Entero_phiFL3A: scaffold protein; LCGT_1109; phage(gi281416260)  4e-57  Click
28 complement(1125184..1125441)  PHAGE_Lactoc_ul36: hypothetical protein ul36_41; LCGT_1110; phage(gi21716112)  5e-30  Click
29 complement(1125505..1126032)  hypothetical protein; LCGT_1111  N/A  Click
30 complement(1126065..1127162)  PHAGE_Lactob_Lj965: putative minor head protein; LCGT_1112; phage(gi41179242)  4e-51  Click
31 complement(1127168..1127455)  PHAGE_Entero_phiFL3A: ribosomal protein; LCGT_1113; phage(gi281416258)  9e-16  Click
32 complement(1127574..1129082)  PHAGE_Lactob_Lj965: putative portal protein; LCGT_1114; phage(gi41179240)  2e-113  Click
33 complement(1129091..1130326)  PHAGE_Entero_phiFL1A: terminase large subunit; LCGT_1115; phage(gi281416362)  0.0  Click
34 complement(1130316..1130828)  PHAGE_Lactob_phig1e: putative terminase small subunit; LCGT_1116; phage(gi23455798)  2e-35  Click
35 complement(1131130..1131200)  tRNA  N/A  Click
36 complement(1131351..1131773)  PHAGE_Lactoc_1: ALT; LCGT_1117; phage(gi13786560)  7e-71  Click
37 complement(1132396..1132617)  PHAGE_Lactoc_949: hypothetical protein; LCGT_1118; phage(gi327197915)  3e-16  Click
38 complement(1132614..1132907)  hypothetical protein; LCGT_1119  N/A  Click
39 complement(1132953..1133645)  PHAGE_Lactoc_r1t: hypothetical protein r1tp22; LCGT_1120; phage(gi23455741)  6e-128  Click
40 complement(1133632..1134006)  hypothetical protein; LCGT_1121  N/A  Click
41 complement(1134003..1134380)  PHAGE_Entero_EF62phi: Phage related protein; LCGT_1122; phage(gi384519765)  7e-13  Click
42 complement(1134384..1134611)  hypothetical protein; LCGT_1123  N/A  Click
43 1134737..1135087  PHAGE_Lactoc_T: hypothetical protein BK5-Tp55; LCGT_1124; phage(gi14251178)  2e-30  Click
44 complement(1134976..1135146)  hypothetical protein; LCGT_1125  N/A  Click
45 complement(1135121..1135657)  PHAGE_Lactoc_ul36: hypothetical protein ul36_23; LCGT_1126; phage(gi21716094)  3e-42  Click
46 complement(1135650..1135844)  hypothetical protein; LCGT_1127  N/A  Click
47 complement(1135822..1136001)  hypothetical protein; LCGT_1128  N/A  Click
48 complement(1136001..1136345)  hypothetical protein; LCGT_1129  N/A  Click
49 complement(1136338..1136727)  PHAGE_Lactoc_phiLC3: hypothetical protein phiLC3p17; LCGT_1130; phage(gi45597406)  2e-05  Click
50 complement(1137305..1137709)  PHAGE_Lactoc_ul36: putative RusA-like resolvase; LCGT_1131; phage(gi21716088)  7e-43  Click
51 complement(1137706..1137855)  hypothetical protein; LCGT_1132  N/A  Click
52 complement(1137839..1138081)  hypothetical protein; LCGT_1133  N/A  Click
53 complement(1138068..1138889)  PHAGE_Lactoc_T: putative replication protein; LCGT_1134; phage(gi14251172)  1e-96  Click
54 complement(1138877..1139221)  PHAGE_Leucon_phiLN04: putative HNH endonuclease; LCGT_1135; phage(gi472437220)  7e-11  Click
55 complement(1139307..1139813)  PHAGE_Lactoc_T: putative single stranded DNA binding protein; LCGT_1136; phage(gi14251188)  2e-48  Click
56 complement(1139813..1140529)  PHAGE_Strept_2: nucleoside triphosphate binding motifs protein; LCGT_1137; phage(gi273809760)  3e-82  Click
57 complement(1140532..1141020)  PHAGE_Lister_A500: gp43; LCGT_1138; phage(gi157325002)  3e-30  Click
58 complement(1141104..1141259)  hypothetical protein; LCGT_1139  N/A  Click
59 1141362..1141859  hypothetical protein; LCGT_1140  N/A  Click
60 complement(1141837..1142103)  hypothetical protein; LCGT_1141  N/A  Click
61 complement(1142214..1142507)  PHAGE_Lactoc_bIL286: Orf7; LCGT_1142; phage(gi13095750)  3e-13  Click
62 complement(1142520..1143239)  PHAGE_Lactoc_Tuc2009: major structural protein; LCGT_1143; phage(gi13487806)  3e-115  Click
63 complement(1143258..1143401)  hypothetical protein; LCGT_1144  N/A  Click
64 complement(1143509..1143715)  hypothetical protein; LCGT_1145  N/A  Click
65 1143990..1144334  PHAGE_Lactoc_bIL310: immunity repressor; LCGT_1146; phage(gi13095874)  2e-24  Click
66 1144346..1144738  PHAGE_Lactoc_bIL312: Orf4; LCGT_1147; phage(gi13095895)  2e-30  Click
67 1144837..1145415  PHAGE_Strept_Sfi21: immunity region; LCGT_1148; phage(gi9632963)  1e-36  Click
68 1145540..1146622  PHAGE_Lactoc_bIL286: integrase; LCGT_1149; phage(gi13095744)  8e-160  Click
69 complement(1146777..1147130)  tRNA  N/A  Click
70 complement(1147176..1147925)  conserved hypothetical protein; LCGT_1150  N/A  Click
71 complement(1147922..1148809)  PHAGE_Amsact_: putative ATP-binding cassette transporter; LCGT_1151; phage(gi9964444)  2e-17  Click
72 complement(1149016..1149351)  conserved hypothetical protein; LCGT_1152  N/A  Click
73 1149527..1150225  PHAGE_Feldma_virus: putative sensor histidine kinase; LCGT_1153; phage(gi197322366)  2e-08  Click
74 1160597..1160610  attR    TTTTCTTACTTATT  N/A  Click
75 1163002..1163016  attR    ATTTTCTAGATTTTA  N/A  Click
Region 3, total : 8 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1363524..1363603  attL    TTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGTCCA  N/A  Click
2 complement(1366872..1367999)  PHAGE_Lactoc_bIL312: integrase; LCGT_1376; phage(gi13095892)  2e-50  Click
3 complement(1368040..1368246)  hypothetical protein; LCGT_1377  N/A  Click
4 complement(1368354..1368845)  PHAGE_Rhodoc_RER2: antirestriction protein; LCGT_1378; phage(gi372449960)  2e-09  Click
5 complement(1368963..1369484)  hypothetical protein; LCGT_1379  N/A  Click
6 complement(1369481..1370515)  PHAGE_Strept_5: putative tail protein; LCGT_1380; phage(gi28876393)  1e-12  Click
7 complement(1370517..1370909)  PHAGE_Human__8: LANA; LCGT_1381; phage(gi139472804)  3e-07  Click
8 1371005..1371280  PHAGE_Lactob_phiAT3: putative transposase A; LCGT_1382; phage(gi48697273)  3e-11  Click
9 1371283..1372146  PROPHAGE_Escher_CFT073: transposase insF; LCGT_1383; phage(gi26250329)  2e-38  Click
10 1372101..1372180  attR    TTTAACTCCAAATCAGAAAGAAGAAAATTATTTTAAGAAAATATAGCTCATTTTGTGTCTAAATATTTGACATTAGTCCA  N/A  Click
Region 4, total : 18 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1755914..1755940  attL    AATTTATGACACTTTTTATGAACCTTT  N/A  Click
2 complement(1755947..1757137)  PHAGE_Lactoc_bIL310: integrase; LCGT_1777; phage(gi13095863)  8e-79  Click
3 complement(1757460..1758350)  conserved hypothetical protein; LCGT_1778  N/A  Click
4 complement(1758408..1758719)  PHAGE_Lactoc_bIL310: hypothetical protein bIL310p02; LCGT_1779; phage(gi13095864)  8e-17  Click
5 complement(1758741..1758977)  hypothetical protein; LCGT_1780  N/A  Click
6 complement(1759043..1759333)  PHAGE_Lactoc_bIL310: hypothetical protein bIL310p02; LCGT_1781; phage(gi13095864)  3e-12  Click
7 complement(1759671..1759919)  hypothetical protein; LCGT_1782  N/A  Click
8 complement(1760421..1761122)  PHAGE_Lactoc_bIL309: Orf32; LCGT_1783; phage(gi13095837)  2e-21  Click
9 1761274..1761495  hypothetical protein; LCGT_1784  N/A  Click
10 1761703..1762401  PHAGE_Lactoc_bIL310: anti-repressor; LCGT_1785; phage(gi13095876)  2e-16  Click
11 1763095..1763259  hypothetical protein; LCGT_1786  N/A  Click
12 1763243..1763524  PHAGE_Lactoc_bIL310: hypothetical protein bIL310p19; LCGT_1787; phage(gi13095880)  3e-05  Click
13 1763645..1763911  hypothetical protein; LCGT_1788  N/A  Click
14 1763911..1764240  PHAGE_Lactoc_bIL310: hypothetical protein bIL310p23; LCGT_1789; phage(gi13095884)  4e-27  Click
15 1764210..1765946  PHAGE_Lactoc_bIL311: Orf9; LCGT_1790; phage(gi13095667)  3e-143  Click
16 1766427..1767290  PHAGE_Lactoc_bIL310: hypothetical protein bIL310p26; LCGT_1791; phage(gi13095887)  8e-08  Click
17 1767347..1767526  PHAGE_Lactoc_bIL310: hypothetical protein bIL310p20; LCGT_1792; phage(gi13095881)  2e-05  Click
18 1767658..1767846  hypothetical protein; LCGT_1793  N/A  Click
19 1768092..1768604  PHAGE_Clostr_phi3626: putative prohead protease; LCGT_1794; phage(gi20065968)  6e-10  Click
20 1769445..1769471  attR    AATTTATGACACTTTTTATGAACCTTT  N/A  Click