| Definition | Escherichia coli str. K-12 substr. W3110, complete genome. |
|---|---|
| Accession | AC_000091 |
| Length | 4,646,332 |
Legend
| Hits against Virus and prophage DB | |
| Hits against Bacterial DB or GenBank file |
Region 1, total : 14 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 8238..9191 | PHAGE_Cyanop_MED4_213: TalC; -; phage(gi472340344) | 2e-12 | Click |
| 2 | 9306..9893 | predicted molybdochelatase; - | N/A | Click |
| 3 | complement(9928..10494) | conserved inner membrane protein associated with acetate transport; - | N/A | Click |
| 4 | complement(10643..11356) | hypothetical protein; - | N/A | Click |
| 5 | 10830..11315 | hypothetical protein; - | N/A | Click |
| 6 | complement(11382..11786) | hypothetical protein; - | N/A | Click |
| 7 | 12163..14079 | PHAGE_Bathyc_BpV1: hypothetical protein; -; phage(gi313768007) | 2e-154 | Click |
| 8 | 14168..15298 | PHAGE_Cafete_BV_PW1: putative DnaJ/Hsp40; -; phage(gi310831116) | 4e-46 | Click |
| 9 | 15445..16557 | PROPHAGE_Escher_MG1655: IS186 transposase; -; phage(gi90111427) | 0.0 | Click |
| 10 | complement(16751..16960) | PHAGE_Entero_Min27: mokW; -; phage(gi170783687) | 3e-22 | Click |
| 11 | complement(16751..16903) | PHAGE_Entero_Min27: mokW; -; phage(gi170783687) | 8e-17 | Click |
| 12 | 17489..18655 | sodium-proton antiporter; - | N/A | Click |
| 13 | 18715..19620 | DNA-binding transcriptional activator; - | N/A | Click |
| 14 | complement(19811..20314) | PROPHAGE_Escher_MG1655: IS1 transposase B; -; phage(gi16131317) | 1e-96 | Click |
Region 2, total : 26 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 563978..564024 | attL CTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATT | N/A | Click |
| 2 | complement(564038..565201) | PHAGE_Salmon_epsilon34: Tyrosine integrase; -; phage(gi221328640) | 0.0 | Click |
| 3 | complement(565321..565584) | PHAGE_Entero_2008: putative exonuclease; -; phage(gi209427739) | 1e-46 | Click |
| 4 | 566056..566364 | PROPHAGE_Escher_MG1655: IS3 transposase A; -; phage(gi226524700) | 4e-49 | Click |
| 5 | 566361..567227 | PROPHAGE_Escher_MG1655: IS3 transposase B; -; phage(gi16128284) | 3e-173 | Click |
| 6 | 567285..567470 | PHAGE_Entero_lambda: ren exclusion protein; -; phage(gi9626297) | 2e-21 | Click |
| 7 | 567538..567870 | PHAGE_Acinet_Acj61: putative quaternary ammonium compound-resistance protein qacE; -; phage(gi311992758) | 1e-10 | Click |
| 8 | 567928..567939 | attL TTTTATGCTTTT | N/A | Click |
| 9 | 568125..569651 | PHAGE_Bacill_WBeta: putative site-specific recombinase; -; phage(gi85701406) | 5e-09 | Click |
| 10 | 570116..570667 | predicted kinase inhibitor; - | N/A | Click |
| 11 | 570677..571474 | predicted DNA-binding transcriptional regulator; - | N/A | Click |
| 12 | 571689..572144 | PHAGE_Cronob_phiES15: hypothetical protein; -; phage(gi401817579) | 6e-61 | Click |
| 13 | 572144..572314 | PHAGE_Escher_HK639: NinE; -; phage(gi356870663) | 6e-15 | Click |
| 14 | 572307..572597 | PHAGE_Entero_mEp237: hypothetical protein; -; phage(gi435439317) | 8e-49 | Click |
| 15 | 572594..572956 | PHAGE_Entero_mEp237: Holliday junction resolvase RusA; -; phage(gi435439318) | 5e-62 | Click |
| 16 | 572953..573093 | PHAGE_Entero_mEp237: hypothetical protein; -; phage(gi435439319) | 1e-10 | Click |
| 17 | 573179..573562 | PHAGE_Entero_2008: antitermination protein Q; -; phage(gi209427762) | 5e-56 | Click |
| 18 | complement(573960..574976) | PROPHAGE_Escher_MG1655: IS5 transposase and trans-activator; -; phage(gi16131377) | 0.0 | Click |
| 19 | 576621..576836 | PHAGE_Stx2_c_II: holin; -; phage(gi302393164) | 1e-28 | Click |
| 20 | 576836..577333 | PHAGE_Entero_cdtI: lysin; -; phage(gi148609440) | 3e-92 | Click |
| 21 | 577330..577791 | PHAGE_Entero_lambda: cell lysis protein; -; phage(gi9626310) | 2e-79 | Click |
| 22 | 577550..577732 | PHAGE_Entero_lambda: Rz1 protein; -; phage(gi160338810) | 1e-29 | Click |
| 23 | complement(577823..578116) | PHAGE_Escher_TL_2011c: Bor protein precursor; -; phage(gi418487071) | 2e-49 | Click |
| 24 | complement(578407..578817) | PHAGE_Entero_lambda: putative envelope protein; -; phage(gi19263396) | 7e-75 | Click |
| 25 | 579103..579309 | PHAGE_Entero_lambda: hypothetical protein lambdap79; -; phage(gi19263397) | 1e-32 | Click |
| 26 | 580057..580602 | PHAGE_Entero_lambda: DNA packaging protein; -; phage(gi9626244) | 1e-96 | Click |
| 27 | complement(581375..581959) | predicted SAM-dependent methyltransferase; - | N/A | Click |
| 28 | 582098..582283 | PHAGE_Entero_lambda: Putative fiber assembly protein; -; phage(gi9626269) | 1e-05 | Click |
| 29 | 585042..585053 | attR TTTTATGCTTTT | N/A | Click |
| 30 | 585280..585326 | attR CTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATT | N/A | Click |
Region 3, total : 21 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 1200217..1200230 | attL ATTCATCTTATTTT | N/A | Click |
| 2 | complement(1201256..1202383) | PHAGE_Entero_mEp235: integrase; -; phage(gi428781836) | 1e-58 | Click |
| 3 | complement(1202364..1202609) | predicted excisionase; - | N/A | Click |
| 4 | complement(1202646..1202957) | hypothetical protein; - | N/A | Click |
| 5 | 1203074..1203415 | hypothetical protein; - | N/A | Click |
| 6 | complement(1203353..1203661) | PHAGE_Cronob_phiES15: hypothetical protein; -; phage(gi401817573) | 2e-11 | Click |
| 7 | complement(1203836..1204510) | PHAGE_Entero_SfV: repressor; -; phage(gi19549021) | 5e-132 | Click |
| 8 | 1204601..1204801 | PHAGE_Entero_SfV: repressor; -; phage(gi19549022) | 7e-32 | Click |
| 9 | 1204833..1205402 | PHAGE_Entero_SfV: hypothetical protein SfVp36; -; phage(gi19549023) | 1e-91 | Click |
| 10 | 1205399..1205737 | hypothetical protein; - | N/A | Click |
| 11 | 1205747..1207114 | PHAGE_Entero_SfV: large terminase subunit; -; phage(gi19548992) | 0.0 | Click |
| 12 | 1207126..1207308 | PHAGE_Salmon_ST64B: putative integral membrane protein; -; phage(gi23505448) | 9e-29 | Click |
| 13 | 1207308..1207781 | PHAGE_Salmon_ST64B: Portal Protein; -; phage(gi23505449) | 2e-75 | Click |
| 14 | 1207837..1208499 | PHAGE_Entero_SfV: tail protein; -; phage(gi19549009) | 9e-122 | Click |
| 15 | 1208490..1209074 | PHAGE_Entero_SfV: tail protein; -; phage(gi19548988) | 1e-113 | Click |
| 16 | 1209078..1209707 | PHAGE_Entero_SfV: hypothetical protein SfVp21; -; phage(gi19548989) | 5e-54 | Click |
| 17 | 1209709..1210122 | PHAGE_Entero_mEp213: tail fiber assembly protein; -; phage(gi428782612) | 6e-24 | Click |
| 18 | complement(1210094..1210696) | PHAGE_Entero_HK106: tail fiber assembly protein; -; phage(gi428783304) | 3e-100 | Click |
| 19 | 1211262..1211816 | PHAGE_Entero_2: DNA-invertase; -; phage(gi169936026) | 8e-89 | Click |
| 20 | 1211923..1212756 | PHAGE_Lactob_H: hypothetical protein; -; phage(gi148750872) | 4e-05 | Click |
| 21 | complement(1213257..1213580) | PHAGE_Stx2_c_1717: hypothetical protein Stx2-1717_gp43; -; phage(gi209447168) | 3e-42 | Click |
| 22 | complement(1214280..1214684) | PHAGE_Entero_HK629: putative envelope protein; -; phage(gi428782079) | 2e-29 | Click |
| 23 | 1218248..1218261 | attR ATTCATCTTATTTT | N/A | Click |
Region 4, total : 27 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 1413683..1413694 | attL AAATGGGGCAAA | N/A | Click |
| 2 | complement(1413714..1414949) | PHAGE_Gifsy_2: bacteriophage integrase; -; phage(gi169257268) | 2e-90 | Click |
| 3 | complement(1414951..1415166) | hypothetical protein; - | N/A | Click |
| 4 | complement(1415245..1415454) | hypothetical protein; - | N/A | Click |
| 5 | complement(1415447..1415641) | restriction alleviation protein; - | N/A | Click |
| 6 | complement(1415698..1416507) | PHAGE_Entero_epsilon15: RecT; -; phage(gi30387413) | 1e-81 | Click |
| 7 | complement(1419202..1419477) | hypothetical protein; - | N/A | Click |
| 8 | complement(1419552..1419722) | PHAGE_Gifsy_2: hypothetical protein STM1010.1n.Gifsy2; -; phage(gi169257274) | 5e-06 | Click |
| 9 | complement(1419722..1419943) | PHAGE_Escher_P13374: host killing protein; -; phage(gi410491620) | 8e-06 | Click |
| 10 | 1420385..1420873 | PHAGE_Entero_lambda: Superinfection exclusion protein B; -; phage(gi19263394) | 1e-07 | Click |
| 11 | complement(1420870..1421025) | PHAGE_Salico_CGphi29: hypothetical protein; -; phage(gi472340166) | 7e-10 | Click |
| 12 | complement(1421036..1421170) | hypothetical protein; - | N/A | Click |
| 13 | complement(1421479..1421955) | predicted DNA-binding transcriptional regulator; - | N/A | Click |
| 14 | 1422079..1422375 | PHAGE_Aggreg_S1249: phage protein; -; phage(gi273809591) | 2e-14 | Click |
| 15 | 1422398..1422820 | PHAGE_Entero_mEp237: CII protein; -; phage(gi435439306) | 3e-08 | Click |
| 16 | 1422833..1423690 | PHAGE_Gifsy_2: bacteriophage DNA replication protein; Lambda gpo homolog; -; phage(gi169257279) | 9e-23 | Click |
| 17 | 1423697..1424443 | PHAGE_Gifsy_2: bacteriophage DNA replication protein; -; phage(gi169257280) | 2e-76 | Click |
| 18 | 1424466..1425026 | predicted DNA-binding protein; - | N/A | Click |
| 19 | 1425059..1425358 | PHAGE_Entero_HK630: cell lysis protein Rz; -; phage(gi428782852) | 4e-46 | Click |
| 20 | 1425114..1425299 | PHAGE_Entero_HK630: Rz1 protein; -; phage(gi428782853) | 7e-29 | Click |
| 21 | 1425496..1426953 | potassium transporter subunit; - | N/A | Click |
| 22 | 1427091..1427354 | PHAGE_Psychr_pOW20_A: DNA methylase; -; phage(gi472339820) | 5e-21 | Click |
| 23 | 1427335..1427694 | hypothetical protein; - | N/A | Click |
| 24 | 1428168..1429196 | PHAGE_Escher_HK639: tail length tape measure protein; -; phage(gi356870615) | 6e-27 | Click |
| 25 | complement(1429460..1430440) | PROPHAGE_Escher_MG1655: IS5 transposase and trans-activator; -; phage(gi16131377) | 0.0 | Click |
| 26 | 1430763..1434125 | PHAGE_Entero_mEp460: side tail fiber protein; -; phage(gi428782336) | 2e-149 | Click |
| 27 | 1434125..1434700 | PROPHAGE_Escher_MG1655: Qin prophage; predicted tail fibre assembly protein; -; phage(gi16129505) | 9e-109 | Click |
| 28 | complement(1434798..1435388) | PHAGE_Escher_D108: G region invertase; -; phage(gi281199698) | 7e-25 | Click |
| 29 | 1436526..1436537 | attR AAATGGGGCAAA | N/A | Click |
Region 5, total : 39 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 1621271..1621282 | attL AAAAAAGAGGTA | N/A | Click |
| 2 | 1626406..1626418 | attL ATATGTTTGAAAA | N/A | Click |
| 3 | 1630929..1631132 | PHAGE_Salmon_SSU5: putative selenium-binding protein YdfZ; -; phage(gi410491512) | 1e-13 | Click |
| 4 | complement(1631167..1632627) | PHAGE_Microm_MpV1: hypothetical protein; -; phage(gi313768442) | 1e-40 | Click |
| 5 | complement(1632716..1633999) | PHAGE_Burkho_phi1026b: gp59; -; phage(gi38707949) | 1e-33 | Click |
| 6 | 1634753..1635019 | predicted DNA-binding transcriptional regulator; - | N/A | Click |
| 7 | 1635336..1635926 | PHAGE_Escher_D108: G region invertase; -; phage(gi281199698) | 5e-25 | Click |
| 8 | complement(1636024..1636599) | PROPHAGE_Escher_MG1655: Qin prophage; predicted tail fibre assembly protein; -; phage(gi16129505) | 2e-109 | Click |
| 9 | complement(1636599..1637561) | PROPHAGE_Escher_MG1655: Qin prophage; predicted side tail fibre assembly protein; -; phage(gi16129506) | 0.0 | Click |
| 10 | complement(1637512..1638081) | PHAGE_Entero_HK630: terminase small subunit nu1; -; phage(gi428782788) | 3e-94 | Click |
| 11 | 1638470..1638703 | PHAGE_Entero_2008: hypothetical protein YYZ_gp48; -; phage(gi209427772) | 7e-21 | Click |
| 12 | 1638761..1639171 | PHAGE_Entero_HK629: putative envelope protein; -; phage(gi428782079) | 2e-60 | Click |
| 13 | complement(1639323..1639496) | hypothetical protein; - | N/A | Click |
| 14 | complement(1639668..1639823) | hypothetical protein; - | N/A | Click |
| 15 | complement(1640169..1640381) | PHAGE_Lactoc_bIL312: Csp; -; phage(gi13095918) | 1e-15 | Click |
| 16 | complement(1640744..1641241) | PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; -; phage(gi16765210) | 2e-53 | Click |
| 17 | complement(1641238..1641771) | PHAGE_Entero_mEp460: endolysin; -; phage(gi428782372) | 2e-97 | Click |
| 18 | complement(1641768..1642079) | PHAGE_Entero_mEp460: hypothetical protein; -; phage(gi428782371) | 1e-29 | Click |
| 19 | complement(1642084..1642299) | PHAGE_Entero_mEp460: porin; -; phage(gi428782370) | 3e-33 | Click |
| 20 | 1642330..1642342 | attR ATATGTTTGAAAA | N/A | Click |
| 21 | complement(1643053..1643268) | PHAGE_Lactoc_bIL312: Csp; -; phage(gi13095918) | 5e-16 | Click |
| 22 | 1643569..1643781 | cold shock protein; - | N/A | Click |
| 23 | complement(1644203..1644955) | PHAGE_Entero_mEp460: late gene regulator; -; phage(gi428782366) | 4e-137 | Click |
| 24 | complement(1644969..1646018) | PHAGE_Entero_mEp460: hypothetical protein; -; phage(gi428782365) | 5e-114 | Click |
| 25 | complement(1646365..1646616) | hypothetical protein; - | N/A | Click |
| 26 | complement(1646833..1646988) | PHAGE_Stx2_c_II: putative host killer protein; -; phage(gi302393105) | 3e-19 | Click |
| 27 | complement(1647060..1647347) | toxin of the RelE-RelB toxin-antitoxin system; - | N/A | Click |
| 28 | complement(1647347..1647586) | bifunctional antitoxin of the RelE-RelB toxin-antitoxin system and transcriptional repressor; - | N/A | Click |
| 29 | 1647611..1647916 | hypothetical protein; - | N/A | Click |
| 30 | 1648119..1648451 | hypothetical protein; - | N/A | Click |
| 31 | complement(1648888..1649037) | hypothetical protein; - | N/A | Click |
| 32 | complement(1649060..1649350) | hypothetical protein; - | N/A | Click |
| 33 | complement(1649334..1649564) | PHAGE_Pectob_ZF40: putative cro anti-repressor; -; phage(gi422936651) | 1e-08 | Click |
| 34 | 1649648..1650055 | PHAGE_Cronob_phiES15: putative transcriptional repressor DicA; -; phage(gi401817574) | 5e-33 | Click |
| 35 | 1650222..1650377 | PHAGE_Salico_CGphi29: hypothetical protein; -; phage(gi472340166) | 2e-09 | Click |
| 36 | 1650379..1650507 | hypothetical protein; - | N/A | Click |
| 37 | 1650537..1650755 | hypothetical protein; - | N/A | Click |
| 38 | 1651323..1651511 | cell division inhibition protein; - | N/A | Click |
| 39 | 1651508..1651699 | hypothetical protein; - | N/A | Click |
| 40 | 1651792..1652712 | hypothetical protein; - | N/A | Click |
| 41 | 1652595..1653251 | PROPHAGE_Escher_MG1655: IS2 transposase TnpB; -; phage(gi16130763) | 1e-128 | Click |
| 42 | 1653226..1654422 | PHAGE_Entero_2008: putative integrase; -; phage(gi209427727) | 1e-135 | Click |
| 43 | 1654566..1654577 | attR AAAAAAGAGGTA | N/A | Click |
Region 6, total : 17 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 2471800..2471815 | attL TTGCAGGTTCGATTCC | N/A | Click |
| 2 | 2471991..2473148 | PROPHAGE_Escher_MG1655: CPS-53 (KpLE1) prophage; predicted prophage CPS-53 integrase; -; phage(gi16130281) | 0.0 | Click |
| 3 | 2473301..2473663 | PHAGE_Entero_SfV: putative flippase; -; phage(gi19549013) | 1e-58 | Click |
| 4 | 2473660..2474580 | PHAGE_Entero_SfV: bactoprenol glucosyltransferase; -; phage(gi19549012) | 6e-163 | Click |
| 5 | 2474577..2475908 | predicted inner membrane protein; - | N/A | Click |
| 6 | complement(2476523..2476963) | PHAGE_Entero_mEp213: tail fiber assembly protein; -; phage(gi428782612) | 2e-26 | Click |
| 7 | complement(2476990..2477508) | PHAGE_Entero_SfV: hypothetical protein SfVp21; -; phage(gi19548989) | 2e-38 | Click |
| 8 | complement(2477558..2477833) | PHAGE_Entero_SfV: DNA adenine methylase; -; phage(gi19549028) | 2e-50 | Click |
| 9 | complement(2477833..2478327) | PHAGE_Entero_SfV: hypothetical protein SfVp40; -; phage(gi19549027) | 2e-87 | Click |
| 10 | complement(2478324..2478692) | PHAGE_Entero_HK140: DNA replication protein O; -; phage(gi428781991) | 3e-14 | Click |
| 11 | 2478966..2479412 | PHAGE_Entero_SfV: hypothetical protein SfVp32; -; phage(gi19549019) | 8e-63 | Click |
| 12 | 2479478..2480302 | PHAGE_Entero_SfV: hypothetical protein SfVp31; -; phage(gi19549018) | 3e-151 | Click |
| 13 | 2480430..2480966 | PHAGE_Entero_SfV: hypothetical protein SfVp30; -; phage(gi19549017) | 3e-99 | Click |
| 14 | 2480957..2481319 | PHAGE_Entero_SfV: hypothetical protein SfVp29; -; phage(gi19549016) | 5e-67 | Click |
| 15 | 2481319..2481624 | PHAGE_Entero_SfV: hypothetical protein SfVp28; -; phage(gi19549015) | 3e-52 | Click |
| 16 | 2481540..2481680 | PHAGE_Entero_SfV: excisionase; -; phage(gi19548990) | 2e-19 | Click |
| 17 | 2481721..2481736 | attR TTGCAGGTTCGATTCC | N/A | Click |
| 18 | 2481756..2481956 | PHAGE_Entero_HK633: hypothetical protein; -; phage(gi428782548) | 3e-34 | Click |
| 19 | complement(2482140..2483075) | PHAGE_Burkho_phi1026b: gp58; -; phage(gi38707948) | 1e-15 | Click |