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The map label for this gene is 239618134

Identifier: 239618134

GI number: 239618134

Start: 1898386

End: 1898805

Strand: Reverse

Name: 239618134

Synonym: Kole_1767

Alternate gene names: NA

Gene position: 1898805-1898386 (Counterclockwise)

Preceding gene: 239618135

Following gene: 239618130

Centisome position: 82.48

GC content: 35.48

Gene sequence:

>420_bases
TTGAAAAATAAAGGAACATACGAAGTTTACGTTGATGGAAGTTTTTTCAACGATTGTGTTAGTTATGCAGCTGTAATCCT
GAAAGATGGGGAACTTCAAAAAACCATAAAAGGAGTCGTCAAAGAAGAAGACTTTATAAGCTCCAGACAAGTCGGTGGAG
AGCTTATGGCTGTAATGAAAGCACTCGAGTGGTGTAAAGAAAACAAAATTACTTCCATAACTCTCTATTACGATTATATT
GGAATAAAAGCATGGGTTACAGGCGAATGGAAAGCAAAGAAACCTCTGACAAGATTTTATGCTGATTATGTAAAAAAAAG
CGGTATAAAAATATACTGGAAAAAAGTTAAGAGCCACAGTGGGAATTATTGGAATGACTATGTAGACAAACTTGCGAAAA
AAAGTGCTCTGGAAGTGTGA

Upstream 100 bases:

>100_bases
ATGCTGTTGGCAGCTTAATAAAAACAGGCCCTACAGGTACTAATGTCAATGACCTCATAATCGCTCTTTGCAAATAATAC
AAGATATAAGGAGTAGAGAA

Downstream 100 bases:

>100_bases
TCATTTTTTGTTGTAGAAACCCTGTTCCCATAGATCTATGACAGAATGATTTATAACATGGTACCTCAAATTTCTTCCTG
AAAATATCGCAGCGGCAAAA

Product: ribonuclease H

Products: NA

Alternate protein names: Ribonuclease HI; Ribonuclease H-Related Protein; RNAse H Family Protein; Ribonuclease; RNAse H

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MKNKGTYEVYVDGSFFNDCVSYAAVILKDGELQKTIKGVVKEEDFISSRQVGGELMAVMKALEWCKENKITSITLYYDYI
GIKAWVTGEWKAKKPLTRFYADYVKKSGIKIYWKKVKSHSGNYWNDYVDKLAKKSALEV

Sequences:

>Translated_139_residues
MKNKGTYEVYVDGSFFNDCVSYAAVILKDGELQKTIKGVVKEEDFISSRQVGGELMAVMKALEWCKENKITSITLYYDYI
GIKAWVTGEWKAKKPLTRFYADYVKKSGIKIYWKKVKSHSGNYWNDYVDKLAKKSALEV
>Mature_139_residues
MKNKGTYEVYVDGSFFNDCVSYAAVILKDGELQKTIKGVVKEEDFISSRQVGGELMAVMKALEWCKENKITSITLYYDYI
GIKAWVTGEWKAKKPLTRFYADYVKKSGIKIYWKKVKSHSGNYWNDYVDKLAKKSALEV

Specific function: Unknown

COG id: COG3341

COG function: function code R; Predicted double-stranded RNA/RNA-DNA hybrid binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16022; Mature: 16022

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: PS50879 RNASE_H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKGTYEVYVDGSFFNDCVSYAAVILKDGELQKTIKGVVKEEDFISSRQVGGELMAVMK
CCCCCCEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALEWCKENKITSITLYYDYIGIKAWVTGEWKAKKPLTRFYADYVKKSGIKIYWKKVKSHS
HHHHHHCCCCEEEEEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEHHCCC
GNYWNDYVDKLAKKSALEV
CCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKNKGTYEVYVDGSFFNDCVSYAAVILKDGELQKTIKGVVKEEDFISSRQVGGELMAVMK
CCCCCCEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALEWCKENKITSITLYYDYIGIKAWVTGEWKAKKPLTRFYADYVKKSGIKIYWKKVKSHS
HHHHHHCCCCEEEEEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEHHCCC
GNYWNDYVDKLAKKSALEV
CCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA