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The map label for this gene is deoC [H]

Identifier: 239618058

GI number: 239618058

Start: 1819113

End: 1819850

Strand: Reverse

Name: deoC [H]

Synonym: Kole_1687

Alternate gene names: 239618058

Gene position: 1819850-1819113 (Counterclockwise)

Preceding gene: 239618059

Following gene: 239618057

Centisome position: 79.05

GC content: 45.39

Gene sequence:

>738_bases
ATGGATAAATTCATGCTTGAAAAAACAATTAAAGAGGTCATAGAAAGGGTGAACCAAAGCTATGAACCGATCAATCGCAA
GCTCTCTGGAGAGCTTAATTTGGCTCGTTATATCGATCATACCCTGTTGAAACCTGATGCTACCCCCGAAATGATTAAAA
CCCTTTGTATGGAAGCCAGAGAGAACAACTTCTTCAGTGTTTGTGTCAACAGTTGTCATCTTCCGTTAGTCACCAAGCTT
CTTGAAGGCACTGATGTGGCGCGTGCTGTTGTCATCGGATTCCCTCTTGGCGCTGTTCCGACCGATGTAAAGGTCTATGA
AACGGAGTGGAGCCTGAATCACGGTGCCGATGAATTTGACATGGTTATAAATATCGGTTACCTCAAAGCGGGCCTTTACG
ACCTGGTTTTCGAAGATATCGCAAAGGTGGTAAAAGCCGCAAAAGACAAGGTCGTAAAGGTTATAATTGAAACGGCGTTG
CTCACAGAGGCAGAGAAGATCGCTGCGTGCGTTATAGCAAAAGAAGCTGGAGCCGCTTTCGTCAAAACATCCACAGGCTT
CAGTTCAGGCGGCGCAACAGCAGAAGATGTCTCCCTGATGAAATTCGTCGTGGGAGATAATGTGAAGGTAAAAGCTTCAG
GCGGTGTGCGAACCAGGGAAGATATGATAAGGATGTTGATTGCGGGCGCCGACAGAATTGGAACGAGTTCTGGAATGAAA
ATAATAGGCAAAAAATAA

Upstream 100 bases:

>100_bases
AGCTGTAAAGATCTTGGACTATCTCTCGATGAATTTTTAGAAATATCGCTCAAAGCGATGCAGGGAATTTCAAAAGAATT
GGGTTTGTGAGGTGAAAAAA

Downstream 100 bases:

>100_bases
TACAACAGGGGGGATTTGGATGGATCTTTGCTCGTTAAGCGTTAAGGACTTCATAAAGCGAGTTGCCGAGAAATCACCGA
CTCCAGGTGGAGGCGCTGTT

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MDKFMLEKTIKEVIERVNQSYEPINRKLSGELNLARYIDHTLLKPDATPEMIKTLCMEARENNFFSVCVNSCHLPLVTKL
LEGTDVARAVVIGFPLGAVPTDVKVYETEWSLNHGADEFDMVINIGYLKAGLYDLVFEDIAKVVKAAKDKVVKVIIETAL
LTEAEKIAACVIAKEAGAAFVKTSTGFSSGGATAEDVSLMKFVVGDNVKVKASGGVRTREDMIRMLIAGADRIGTSSGMK
IIGKK

Sequences:

>Translated_245_residues
MDKFMLEKTIKEVIERVNQSYEPINRKLSGELNLARYIDHTLLKPDATPEMIKTLCMEARENNFFSVCVNSCHLPLVTKL
LEGTDVARAVVIGFPLGAVPTDVKVYETEWSLNHGADEFDMVINIGYLKAGLYDLVFEDIAKVVKAAKDKVVKVIIETAL
LTEAEKIAACVIAKEAGAAFVKTSTGFSSGGATAEDVSLMKFVVGDNVKVKASGGVRTREDMIRMLIAGADRIGTSSGMK
IIGKK
>Mature_245_residues
MDKFMLEKTIKEVIERVNQSYEPINRKLSGELNLARYIDHTLLKPDATPEMIKTLCMEARENNFFSVCVNSCHLPLVTKL
LEGTDVARAVVIGFPLGAVPTDVKVYETEWSLNHGADEFDMVINIGYLKAGLYDLVFEDIAKVVKAAKDKVVKVIIETAL
LTEAEKIAACVIAKEAGAAFVKTSTGFSSGGATAEDVSLMKFVVGDNVKVKASGGVRTREDMIRMLIAGADRIGTSSGMK
IIGKK

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=217, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI1790841, Length=211, Percent_Identity=35.0710900473934, Blast_Score=83, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 26677; Mature: 26677

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKFMLEKTIKEVIERVNQSYEPINRKLSGELNLARYIDHTLLKPDATPEMIKTLCMEAR
CCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
ENNFFSVCVNSCHLPLVTKLLEGTDVARAVVIGFPLGAVPTDVKVYETEWSLNHGADEFD
CCCEEEEHHHCCCHHHHHHHHCCCHHHHHHHEECCCCCCCCCCEEEEEEECCCCCCCCCH
MVINIGYLKAGLYDLVFEDIAKVVKAAKDKVVKVIIETALLTEAEKIAACVIAKEAGAAF
HEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
VKTSTGFSSGGATAEDVSLMKFVVGDNVKVKASGGVRTREDMIRMLIAGADRIGTSSGMK
EEECCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCHHCCCCCCCE
IIGKK
EECCC
>Mature Secondary Structure
MDKFMLEKTIKEVIERVNQSYEPINRKLSGELNLARYIDHTLLKPDATPEMIKTLCMEAR
CCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
ENNFFSVCVNSCHLPLVTKLLEGTDVARAVVIGFPLGAVPTDVKVYETEWSLNHGADEFD
CCCEEEEHHHCCCHHHHHHHHCCCHHHHHHHEECCCCCCCCCCEEEEEEECCCCCCCCCH
MVINIGYLKAGLYDLVFEDIAKVVKAAKDKVVKVIIETALLTEAEKIAACVIAKEAGAAF
HEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
VKTSTGFSSGGATAEDVSLMKFVVGDNVKVKASGGVRTREDMIRMLIAGADRIGTSSGMK
EEECCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCHHCCCCCCCE
IIGKK
EECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]