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The map label for this gene is nrdD [H]

Identifier: 239616932

GI number: 239616932

Start: 580843

End: 582996

Strand: Reverse

Name: nrdD [H]

Synonym: Kole_0530

Alternate gene names: 239616932

Gene position: 582996-580843 (Counterclockwise)

Preceding gene: 239616933

Following gene: 239616931

Centisome position: 25.32

GC content: 44.2

Gene sequence:

>2154_bases
ATGCTTCTAGTCAGGAAAAGAGACGGCTCTCTAGTGGAATTTGAACTTTCAAAGATAATTCTTGCTGTAAAGAAAGCATT
TGAAGCAACGGATACTGCTTACACAGATGACATACTCGAAAGGCTCGCTCTTCGGGTAACTTCTGATTTTCAGGGGAAGA
TTAAAGAAAACATTGTTGACATCGAGGATATTCAGGACTCTGTCGAAAAAACCCTTGAAGATCTTGGATTCAACAAGGTT
GCCAAGGCTTATATATTGTATCGTAAGCAAAGAGAGAAGCTGAGGAATCTCAAATCATCGATGCTGGATTTTGCCAAAAC
AGTCAATAACTATCTTAACCAGAGGGACTGGCGGGTTAAAGAAAACAGCACCGTTACATACTCAATTGGTGGGCTGATAC
TCCACAACAGCGGGACTGTTACAGCGAATTACTGGCTCAGCGAAATCTATGATGAAGAGATCGGAAAAGCACATAAAAAC
GGGGATTTCCATATACACGATCTGTCTATGCTTTCCGGTTATTGCGCTGGTTGGAGTCTCCGGCAGCTTATAGAAGAGGG
GCTTGGCGGTGTGCCGGGAAAGGTTTCTTCCAAACCGGCCAGACATCTCTCGACGCTGGCAAACCAGATGGTTAATTTTC
TTGGAATCCTCCAGAACGAATGGGCCGGCGCACAGGCGTTCAGTTCTTTCGACACCTATCTTGCACCTTTTGTAAAGGTG
GATAACCTCACTTTCAAGGAAGTCAAGCAGTGCATACAATCATTCGTTTTTGGTGTAAATACGCCCAGTCGCTGGGGAAC
ACAGTCGCCCTTCTCAAATATAACCCTTGACTGGACAGTTCCAAAAAGACTCAAAGACGAGCCAGCCATCGTAGGTGGAG
AACCTCAGGATTTCACGTACGGTGATTGCCAAAAAGAGATGGACATAATAAATAGGGCTTTTCTGGAGATCCTGAAAGAA
GGGGATGCCAACGGAAGAGGCTTTCAGTATCCGATACCAACGTACAATATCACCAAAGATTTTGACTGGGAAAACCCGAA
CTCCGAGCTTCTTTTTGAAATCACATCAAAATATGGTACTCCCTATTTCCAGAACTTTATAAATTCGGATCTCAACCCTG
ATGATGTGCGCAGTATGTGTTGCCGGCTTCAGCTGGATAAGCGCGAGTTAAGAAGACGTGGCGGAGGTCTTTTTGGTTCG
GATGAATACACTGGCTCTATCGGTGTCGTAACGATCAATCTTCCAAGGTTGGCTTATTTAAGTAAGAACGAGGTGGAATT
CTTCCAGAGACTTTCAAAAATGATGGATCTGGCAAAACGCAGTCTTGAAATAAAACGTGAGGTTATAGAAAAACTGAATG
ATGAAGGATTGTATCCTTACACCAAGAGGTACCTCAAGAACTTCGATAACCATTTCTCAACGATAGGACTTGTTGGAATG
AACGAGGCTTGTCTCAACGCGAGATGGCTCAAAAAACCTATTTATGAAGAAAACTCAAGACGCTTTGCTATCAGGGTTCT
GGACTTTATGAGAGAACGTCTGAAGATTTATCAGGAAGAGACAGGAAACCTCTATAACCTTGAGGCAACACCGGCTGAGT
CTACCTCTTACCGCCTCGCCAAGATAGACAAGAAACTGTTCCCGGACATAATCACCGCTGGTAAAGATGCTCCCTATTAC
ACCAATTCTACCCACCTTCCGGTGGATTATGAAATAGATATTTTCTCTGCCCTGGAACTTCAGGAGGAGCTTCAAATAAA
ATATACCGGAGGTACAGTGTTCCATGCTTTCCTTGGGGAAAGCGTTGACGATTGGCGAACTACCCGGGAGCTTGTCAAAA
AGATCGCGGAAAATTATCGCATTCCTTACTTCACAATCTCTCCAACCTACTCCATATGCCGTAATCATGGTTACATAAAA
GGTGAGGAATATTCTTGCCCTATCTGCGGGCAACCAACGGAGGTTTATTCGCGTATCACCGGTTATTACAGGCCGGTTCA
GCACTGGAATATTGGTAAACAGGAAGAGTTCAAAAGCAGAAAGGAATTTCGTGTGGAGAGGACTGAAATAGATGGATTTC
GCAGGATGGCAGAAAGTAAGTCTGGTGGACTATCCGGGAAAGGTATCGACAACTCTCTTTACCTCAAGCTGTAA

Upstream 100 bases:

>100_bases
AAAATATAGATGCGTTATTTTTTCTCTTTTTGTGATACTATATATAGTACCATTATATTGTTGGCTTACTATTTATAGGG
ACTGAAATGGGGGGATTTAG

Downstream 100 bases:

>100_bases
TTTTGACTGTGAGTATTGCCATAACGCCGAACTGAAAAAGCGAATTCCTCATCCGATCAAAGAAGTCGATGTTTATAAAT
ATCTATCTTTAAGAAAGAAT

Product: anaerobic ribonucleoside triphosphate reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 717; Mature: 717

Protein sequence:

>717_residues
MLLVRKRDGSLVEFELSKIILAVKKAFEATDTAYTDDILERLALRVTSDFQGKIKENIVDIEDIQDSVEKTLEDLGFNKV
AKAYILYRKQREKLRNLKSSMLDFAKTVNNYLNQRDWRVKENSTVTYSIGGLILHNSGTVTANYWLSEIYDEEIGKAHKN
GDFHIHDLSMLSGYCAGWSLRQLIEEGLGGVPGKVSSKPARHLSTLANQMVNFLGILQNEWAGAQAFSSFDTYLAPFVKV
DNLTFKEVKQCIQSFVFGVNTPSRWGTQSPFSNITLDWTVPKRLKDEPAIVGGEPQDFTYGDCQKEMDIINRAFLEILKE
GDANGRGFQYPIPTYNITKDFDWENPNSELLFEITSKYGTPYFQNFINSDLNPDDVRSMCCRLQLDKRELRRRGGGLFGS
DEYTGSIGVVTINLPRLAYLSKNEVEFFQRLSKMMDLAKRSLEIKREVIEKLNDEGLYPYTKRYLKNFDNHFSTIGLVGM
NEACLNARWLKKPIYEENSRRFAIRVLDFMRERLKIYQEETGNLYNLEATPAESTSYRLAKIDKKLFPDIITAGKDAPYY
TNSTHLPVDYEIDIFSALELQEELQIKYTGGTVFHAFLGESVDDWRTTRELVKKIAENYRIPYFTISPTYSICRNHGYIK
GEEYSCPICGQPTEVYSRITGYYRPVQHWNIGKQEEFKSRKEFRVERTEIDGFRRMAESKSGGLSGKGIDNSLYLKL

Sequences:

>Translated_717_residues
MLLVRKRDGSLVEFELSKIILAVKKAFEATDTAYTDDILERLALRVTSDFQGKIKENIVDIEDIQDSVEKTLEDLGFNKV
AKAYILYRKQREKLRNLKSSMLDFAKTVNNYLNQRDWRVKENSTVTYSIGGLILHNSGTVTANYWLSEIYDEEIGKAHKN
GDFHIHDLSMLSGYCAGWSLRQLIEEGLGGVPGKVSSKPARHLSTLANQMVNFLGILQNEWAGAQAFSSFDTYLAPFVKV
DNLTFKEVKQCIQSFVFGVNTPSRWGTQSPFSNITLDWTVPKRLKDEPAIVGGEPQDFTYGDCQKEMDIINRAFLEILKE
GDANGRGFQYPIPTYNITKDFDWENPNSELLFEITSKYGTPYFQNFINSDLNPDDVRSMCCRLQLDKRELRRRGGGLFGS
DEYTGSIGVVTINLPRLAYLSKNEVEFFQRLSKMMDLAKRSLEIKREVIEKLNDEGLYPYTKRYLKNFDNHFSTIGLVGM
NEACLNARWLKKPIYEENSRRFAIRVLDFMRERLKIYQEETGNLYNLEATPAESTSYRLAKIDKKLFPDIITAGKDAPYY
TNSTHLPVDYEIDIFSALELQEELQIKYTGGTVFHAFLGESVDDWRTTRELVKKIAENYRIPYFTISPTYSICRNHGYIK
GEEYSCPICGQPTEVYSRITGYYRPVQHWNIGKQEEFKSRKEFRVERTEIDGFRRMAESKSGGLSGKGIDNSLYLKL
>Mature_717_residues
MLLVRKRDGSLVEFELSKIILAVKKAFEATDTAYTDDILERLALRVTSDFQGKIKENIVDIEDIQDSVEKTLEDLGFNKV
AKAYILYRKQREKLRNLKSSMLDFAKTVNNYLNQRDWRVKENSTVTYSIGGLILHNSGTVTANYWLSEIYDEEIGKAHKN
GDFHIHDLSMLSGYCAGWSLRQLIEEGLGGVPGKVSSKPARHLSTLANQMVNFLGILQNEWAGAQAFSSFDTYLAPFVKV
DNLTFKEVKQCIQSFVFGVNTPSRWGTQSPFSNITLDWTVPKRLKDEPAIVGGEPQDFTYGDCQKEMDIINRAFLEILKE
GDANGRGFQYPIPTYNITKDFDWENPNSELLFEITSKYGTPYFQNFINSDLNPDDVRSMCCRLQLDKRELRRRGGGLFGS
DEYTGSIGVVTINLPRLAYLSKNEVEFFQRLSKMMDLAKRSLEIKREVIEKLNDEGLYPYTKRYLKNFDNHFSTIGLVGM
NEACLNARWLKKPIYEENSRRFAIRVLDFMRERLKIYQEETGNLYNLEATPAESTSYRLAKIDKKLFPDIITAGKDAPYY
TNSTHLPVDYEIDIFSALELQEELQIKYTGGTVFHAFLGESVDDWRTTRELVKKIAENYRIPYFTISPTYSICRNHGYIK
GEEYSCPICGQPTEVYSRITGYYRPVQHWNIGKQEEFKSRKEFRVERTEIDGFRRMAESKSGGLSGKGIDNSLYLKL

Specific function: Unknown

COG id: COG1328

COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 glycine radical domain [H]

Homologues:

Organism=Escherichia coli, GI1790686, Length=745, Percent_Identity=24.1610738255034, Blast_Score=139, Evalue=8e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005144
- InterPro:   IPR001150
- InterPro:   IPR019777
- InterPro:   IPR012833 [H]

Pfam domain/function: PF03477 ATP-cone; PF01228 Gly_radical [H]

EC number: =1.17.4.2 [H]

Molecular weight: Translated: 82512; Mature: 82512

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: PS51161 ATP_CONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLVRKRDGSLVEFELSKIILAVKKAFEATDTAYTDDILERLALRVTSDFQGKIKENIVD
CEEEEECCCCEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCC
IEDIQDSVEKTLEDLGFNKVAKAYILYRKQREKLRNLKSSMLDFAKTVNNYLNQRDWRVK
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
ENSTVTYSIGGLILHNSGTVTANYWLSEIYDEEIGKAHKNGDFHIHDLSMLSGYCAGWSL
CCCEEEEEECEEEEECCCCEEHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCHHH
RQLIEEGLGGVPGKVSSKPARHLSTLANQMVNFLGILQNEWAGAQAFSSFDTYLAPFVKV
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEE
DNLTFKEVKQCIQSFVFGVNTPSRWGTQSPFSNITLDWTVPKRLKDEPAIVGGEPQDFTY
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCHHCCCCCCEECCCCCCCCC
GDCQKEMDIINRAFLEILKEGDANGRGFQYPIPTYNITKDFDWENPNSELLFEITSKYGT
CHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEEEHHHHCC
PYFQNFINSDLNPDDVRSMCCRLQLDKRELRRRGGGLFGSDEYTGSIGVVTINLPRLAYL
HHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCEECC
SKNEVEFFQRLSKMMDLAKRSLEIKREVIEKLNDEGLYPYTKRYLKNFDNHFSTIGLVGM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHEEEEECC
NEACLNARWLKKPIYEENSRRFAIRVLDFMRERLKIYQEETGNLYNLEATPAESTSYRLA
CHHHHCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHH
KIDKKLFPDIITAGKDAPYYTNSTHLPVDYEIDIFSALELQEELQIKYTGGTVFHAFLGE
HHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHCEEEECCCHHHHHHHCC
SVDDWRTTRELVKKIAENYRIPYFTISPTYSICRNHGYIKGEEYSCPICGQPTEVYSRIT
CHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
GYYRPVQHWNIGKQEEFKSRKEFRVERTEIDGFRRMAESKSGGLSGKGIDNSLYLKL
HHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEC
>Mature Secondary Structure
MLLVRKRDGSLVEFELSKIILAVKKAFEATDTAYTDDILERLALRVTSDFQGKIKENIVD
CEEEEECCCCEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCC
IEDIQDSVEKTLEDLGFNKVAKAYILYRKQREKLRNLKSSMLDFAKTVNNYLNQRDWRVK
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
ENSTVTYSIGGLILHNSGTVTANYWLSEIYDEEIGKAHKNGDFHIHDLSMLSGYCAGWSL
CCCEEEEEECEEEEECCCCEEHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCHHH
RQLIEEGLGGVPGKVSSKPARHLSTLANQMVNFLGILQNEWAGAQAFSSFDTYLAPFVKV
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEE
DNLTFKEVKQCIQSFVFGVNTPSRWGTQSPFSNITLDWTVPKRLKDEPAIVGGEPQDFTY
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCHHCCCCCCEECCCCCCCCC
GDCQKEMDIINRAFLEILKEGDANGRGFQYPIPTYNITKDFDWENPNSELLFEITSKYGT
CHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEEEHHHHCC
PYFQNFINSDLNPDDVRSMCCRLQLDKRELRRRGGGLFGSDEYTGSIGVVTINLPRLAYL
HHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCEECC
SKNEVEFFQRLSKMMDLAKRSLEIKREVIEKLNDEGLYPYTKRYLKNFDNHFSTIGLVGM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHEEEEECC
NEACLNARWLKKPIYEENSRRFAIRVLDFMRERLKIYQEETGNLYNLEATPAESTSYRLA
CHHHHCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHH
KIDKKLFPDIITAGKDAPYYTNSTHLPVDYEIDIFSALELQEELQIKYTGGTVFHAFLGE
HHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHCEEEECCCHHHHHHHCC
SVDDWRTTRELVKKIAENYRIPYFTISPTYSICRNHGYIKGEEYSCPICGQPTEVYSRIT
CHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
GYYRPVQHWNIGKQEEFKSRKEFRVERTEIDGFRRMAESKSGGLSGKGIDNSLYLKL
HHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]