Click here to switch to the map view.

The map label for this gene is yufP [H]

Identifier: 239616868

GI number: 239616868

Start: 493259

End: 494371

Strand: Reverse

Name: yufP [H]

Synonym: Kole_0463

Alternate gene names: 239616868

Gene position: 494371-493259 (Counterclockwise)

Preceding gene: 239616869

Following gene: 239616867

Centisome position: 21.47

GC content: 43.67

Gene sequence:

>1113_bases
ATGAGGCTTAGGATAGAAAAAAGAGCAAACATTCCTGCGTACATGAATCTTCTCGTTCCCGTGGTTTCCATAGCTTTTTC
GTTGCTGGTAATGGGCATTATTCTCGTAATCTTCTTTCAGGGGAGAGGCCAGACATGGGGCGAAGCTTTCAGAGAGACCC
TGTCTGCGTATAAAGAGATGTTCTCCTGGCCCTTCGGGAATATATATGGGCTGTATCAGACACTGGTTAAGATGATTCCA
TTGGCATTTGTAGGTCTTGGGCTTTCATTTGCTTATAGAATGAAGATCTGGAATATAGGTGGTGAAGGACAGCTCTACAT
GGGAGCTTTTGCAGCAACCTGGGGAGCGCTTTACCTTTTTAATGGTATTGAATCAAAACCTTTAATGATATTCCTGTTGT
TGGTGATGGGTGCCATATTTGGTGGTCTATGGGGTGCCATTCCAGCTTTTATGAAAGCCTTTGCCAAAACAGATGAAATC
GTTGTAACTTTGATGTTGAACTATGTTGCAATATTCTGGGTGGATTATCTTGTGTATGGCCCGTGGAAAGATCCAAAGGG
TTATAACTTCCCTATAACTGCAGAATTCCCGGAATCTGCAAGGTTGCCAGCTCTTTTCAATGGAGAGGTACATATCGGGA
TCATATTCGTTATAATTCTTGCTTTCATCCTGCAGTATGTGTACTCCAGAACCAAGTGGGGATTCAATTCAAGGATAGTA
GGAGATAATCCCATGGCAGCAAAGTATTCAGGAATAGACGTTAAAACTTACACAATTGTCTCGCTGATAATCAGCGGGAT
GATAGCCGGTATGGGAGGAGCAGTACAGATGATGGGAATTCAACATAGGCTTCAGCACGGTTTTTCCCCCGGATATGGTT
ACACAGCGATAATCATTGCCTGGCTTGCCAAACTCAACCCGATTGGCGTTCTGGTAGCGGCATTCTTGTTTGGTGGGCTT
TTGGTCGGGAATGAGCAGCTTCAGATGTTCTTTGGATTACCCCTATCACTTGTTTATATATTCCAGGGTCTTGTCCTGTT
CTCGTTGCTTGGCGGTGAATCTATATTCCGGTATCGAATAAGATTTGTGAAGGAAGAGGAAGTGAGATCATGA

Upstream 100 bases:

>100_bases
TCTATGAAGGTCAAATCATGGGTTATACACCTCCTGATCCAGCATATATTGAGGAGATTGGACTCATGATGGGTGGAACC
AAGAGAATGGGGGATGCAGT

Downstream 100 bases:

>100_bases
ACGAAATGAATTCGATCTTTATAACAACGCTTCAAGCTACGGTAAGAGCCGGAACACCATTGTTATTTGCTGTTTTAGGA
GATATATTCACAGAACGTTC

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm]; D-allose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MRLRIEKRANIPAYMNLLVPVVSIAFSLLVMGIILVIFFQGRGQTWGEAFRETLSAYKEMFSWPFGNIYGLYQTLVKMIP
LAFVGLGLSFAYRMKIWNIGGEGQLYMGAFAATWGALYLFNGIESKPLMIFLLLVMGAIFGGLWGAIPAFMKAFAKTDEI
VVTLMLNYVAIFWVDYLVYGPWKDPKGYNFPITAEFPESARLPALFNGEVHIGIIFVIILAFILQYVYSRTKWGFNSRIV
GDNPMAAKYSGIDVKTYTIVSLIISGMIAGMGGAVQMMGIQHRLQHGFSPGYGYTAIIIAWLAKLNPIGVLVAAFLFGGL
LVGNEQLQMFFGLPLSLVYIFQGLVLFSLLGGESIFRYRIRFVKEEEVRS

Sequences:

>Translated_370_residues
MRLRIEKRANIPAYMNLLVPVVSIAFSLLVMGIILVIFFQGRGQTWGEAFRETLSAYKEMFSWPFGNIYGLYQTLVKMIP
LAFVGLGLSFAYRMKIWNIGGEGQLYMGAFAATWGALYLFNGIESKPLMIFLLLVMGAIFGGLWGAIPAFMKAFAKTDEI
VVTLMLNYVAIFWVDYLVYGPWKDPKGYNFPITAEFPESARLPALFNGEVHIGIIFVIILAFILQYVYSRTKWGFNSRIV
GDNPMAAKYSGIDVKTYTIVSLIISGMIAGMGGAVQMMGIQHRLQHGFSPGYGYTAIIIAWLAKLNPIGVLVAAFLFGGL
LVGNEQLQMFFGLPLSLVYIFQGLVLFSLLGGESIFRYRIRFVKEEEVRS
>Mature_370_residues
MRLRIEKRANIPAYMNLLVPVVSIAFSLLVMGIILVIFFQGRGQTWGEAFRETLSAYKEMFSWPFGNIYGLYQTLVKMIP
LAFVGLGLSFAYRMKIWNIGGEGQLYMGAFAATWGALYLFNGIESKPLMIFLLLVMGAIFGGLWGAIPAFMKAFAKTDEI
VVTLMLNYVAIFWVDYLVYGPWKDPKGYNFPITAEFPESARLPALFNGEVHIGIIFVIILAFILQYVYSRTKWGFNSRIV
GDNPMAAKYSGIDVKTYTIVSLIISGMIAGMGGAVQMMGIQHRLQHGFSPGYGYTAIIIAWLAKLNPIGVLVAAFLFGGL
LVGNEQLQMFFGLPLSLVYIFQGLVLFSLLGGESIFRYRIRFVKEEEVRS

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4603

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851
- InterPro:   IPR002229 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 41374; Mature: 41374

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLRIEKRANIPAYMNLLVPVVSIAFSLLVMGIILVIFFQGRGQTWGEAFRETLSAYKEM
CCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
FSWPFGNIYGLYQTLVKMIPLAFVGLGLSFAYRMKIWNIGGEGQLYMGAFAATWGALYLF
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCEEHHHHHHHHHHHHHH
NGIESKPLMIFLLLVMGAIFGGLWGAIPAFMKAFAKTDEIVVTLMLNYVAIFWVDYLVYG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
PWKDPKGYNFPITAEFPESARLPALFNGEVHIGIIFVIILAFILQYVYSRTKWGFNSRIV
CCCCCCCCCCCEECCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
GDNPMAAKYSGIDVKTYTIVSLIISGMIAGMGGAVQMMGIQHRLQHGFSPGYGYTAIIIA
CCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHH
WLAKLNPIGVLVAAFLFGGLLVGNEQLQMFFGLPLSLVYIFQGLVLFSLLGGESIFRYRI
HHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
RFVKEEEVRS
HHHHHHHCCC
>Mature Secondary Structure
MRLRIEKRANIPAYMNLLVPVVSIAFSLLVMGIILVIFFQGRGQTWGEAFRETLSAYKEM
CCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
FSWPFGNIYGLYQTLVKMIPLAFVGLGLSFAYRMKIWNIGGEGQLYMGAFAATWGALYLF
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCEEHHHHHHHHHHHHHH
NGIESKPLMIFLLLVMGAIFGGLWGAIPAFMKAFAKTDEIVVTLMLNYVAIFWVDYLVYG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
PWKDPKGYNFPITAEFPESARLPALFNGEVHIGIIFVIILAFILQYVYSRTKWGFNSRIV
CCCCCCCCCCCEECCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
GDNPMAAKYSGIDVKTYTIVSLIISGMIAGMGGAVQMMGIQHRLQHGFSPGYGYTAIIIA
CCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHH
WLAKLNPIGVLVAAFLFGGLLVGNEQLQMFFGLPLSLVYIFQGLVLFSLLGGESIFRYRI
HHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
RFVKEEEVRS
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: H2O; ribose [Periplasm]; D-allose [Periplasm]; ATP [C]

Specific reaction: ATP + H2O + ribose [Periplasm] = ADP + phosphate + ribose [Cytoplasm] D-allose [Periplasm] + ATP + H2O = D-allose [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]