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The map label for this gene is araQ [H]

Identifier: 239616684

GI number: 239616684

Start: 303738

End: 306152

Strand: Direct

Name: araQ [H]

Synonym: Kole_0277

Alternate gene names: 239616684

Gene position: 303738-306152 (Clockwise)

Preceding gene: 239616683

Following gene: 239616685

Centisome position: 13.19

GC content: 43.4

Gene sequence:

>2415_bases
ATGAAGTATACTACAAAGACATTGATTCAGACTCTTGTTTATCTTATTATCGTTGCTGGTGCGCTTCTAATGCTGATACC
CTTCGCCTGGATGCTTGATACCTCATTCAAAGCCTCCAGCGAAGTTTCCAGCTGGCCTCCAAAGTGGACGACAAAGAATG
CAAAATCAGAGGTTGAATTTCAAACTAAATTGAAATACAAAACAACAGGTGCGGGAATAGACCTCTCATCGCTGAGTTTG
AGTGAATTTCGCAATTTTGCAGCGTTGCTTGGCTCTGCAGCTGGTAAGGATACTCTTGTGGTGATGCTCGACGATGACCC
AATACTCAGAGGTACAGTAACCCTCAGGTTAACAGATGAAACCGGGCAGGCTCCAGCGTATGCAAAGAATATAGACAAAG
CCACATATGCTGAAGTCGTCAGTGAATTTGAAGAAGTTAAGTCCAACGCACCCTCTGCATATGAGAAAGAATTAAGAAAC
ATATTCACCGATAACCCTTCAGATTTTATCGATGATTTCCTTTATGTCGCCGAATTTTCCGATGAAGGCTTCGCGAGACG
TGTAATGTTCGTTGCCAACCTGAGCGCAAGTCTGGAAGGAGCTATAGGCAACCTGAAGCGTGCTGTCGAAACGCCCTTCA
AACCGTTCCCGATGGACAACGATACCACAAAAAAGCTTAAAGAAGAACTGACATTAAAAGCTTCCGAGCTTTTTGAGCCT
TTCCGTGAGGAGATTTCAAAGGTCGCTACTGATCTTCAATCCATGAAGGTCGGGGAAACCAGAGTCATTACCCTTGAGGA
AGTCAGGAGCGTTATAACTGCACTCGATAATCTGATCAATGAGGCCAGAAACCTTAAAAACCTTGTTGTTAAGGAATTAA
CACCTTTAATTCCTGCAACCGATATGCGCTTAAAACTCTCTTTAAGACAGGTAAGCTCTCTCATAGATGGTGGTGTTATT
AAAAAATTGGAAAACTGGAAAACCCTTCTGGCATTCTACAACAAGGTGAAAGCGTTCTACGTCAGTCAGCAGGTTTTGAG
GCTTTCCGGCAGTGAAATCGTTGGTAGAATAAGGACTGACCAGGAAGTTCACGCGATTTTGATGAAGGAGATTGATAACT
GGGGAGCCCCGGATGAACTGAAAACCTATTTGAAAAACAACATCACTGAAAAGAATGTGAGAAATTCACTACAGATAATG
CTCAGTCACGTGGATTTCGAATATAAAGAGCTATTGTCAAAGTATTTCGATAATCCCACCCAGGCTTTTAACGGCATTAC
AGAGATAATAAACCTTTCAAGAGCTGCTCTTGTGTCTCTTAACGATCCGCATTATCAAAATGCAGTTGAAAGCAAAATTG
AAAGTGGTCTGAATTATGATGCTTTCAAGAACATAGCAAAAGAAATAGGGGCTAAAAGCGGCCAATCTCTGGTTATAAAC
GCGTCTCTTGCTTCTCTTGACAGATACGCCAACAAGGTAGATCCCGCCACATTCGGTCGATTGGTCTCAAGAAGATGGAA
GGAAACACGCTTGATAGGTGAATTTTCGAAAACCGTTTCTGATACGTTCAGTGAACTTGAAATAGTAAAGAAGCCGGATG
AGGTTTACAAGGTCTATTACCGGGGAAGAATAACCAGTGCCGGTACTAAATCTTTCGAAATAAAGTTCAAAGACCTTTAT
GCCGTTTGGTTCAAAGACGACAACGTTCAAGGAAAGGTAAAGTACACTGCCAGTGAAGTGTTCAAGAATTTCTGGCAAAA
CTATGTGGATGCATGGAATGCCGCACCCTTTGGAAGGTACTATTTCAACACGGTCTTCGTAGCTGTCAGCACCACGTTCC
TTGAAATAATATTTGCAGCAATGGCTGCCTTTGCCTTTGCGAAGCTTGACTTTTTCGGGAAAAACTTCCTCTTTACCCTT
TTCCTCGCCACTATGATGGTGCCGGGAGAAGTCCTTCTGGTCCCGAATTTTATAACCCTTACGGCCTTCGGATGGATCGA
TACGTACTACGCCCTTATCGTGCCGTGGGTTGTAAGCGTTTTTGCTATATTTCTTTTAAGACAGCATTTTATGACGATCC
CAGACGAGCTCTTTGATGCCGCAAAAATAGATGGAATGTCAAAGTGGAAGTTCCTCTGGCGGATAATGGTTCCGCTTGCA
AAACCTGCTGTTATCACAGGTGCACTCCTGAAGTTCGTTGGAAGCTGGAACGCTTTCCTCTGGGTATTGATCGTTACCAA
GAGCCCGGAATACAGAACACTGCCCGTTGGTTTGCAGAACTTCAGTAGCGCAACCGGTACAGAGTACAATCTCTTGATGT
CAGCAGCTACCTTCTCCATTGTACCGGTAATAATTCTGTTCCTTGTAACCCAGAAATACTTCATCGCCGGTATCGCAAGG
AGTGGTTTGAAATAA

Upstream 100 bases:

>100_bases
CGCAGCTGCATATGTGTTGTTCATAATAATACTAATATTGACGATGGTACAGTTCAAAATCGGACGTTCTCGCGTCCACT
ACGAGAGTTGAGGTGGAAGC

Downstream 100 bases:

>100_bases
GAAGAAAACGAGTGTCCTTTGGTGTGATTATTTTCATCACTCTTTTGCTGTTGCTTACAGTGGTTGCAAACTATCGTGCA
TATACCAAATATAAGGAAGC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 804; Mature: 804

Protein sequence:

>804_residues
MKYTTKTLIQTLVYLIIVAGALLMLIPFAWMLDTSFKASSEVSSWPPKWTTKNAKSEVEFQTKLKYKTTGAGIDLSSLSL
SEFRNFAALLGSAAGKDTLVVMLDDDPILRGTVTLRLTDETGQAPAYAKNIDKATYAEVVSEFEEVKSNAPSAYEKELRN
IFTDNPSDFIDDFLYVAEFSDEGFARRVMFVANLSASLEGAIGNLKRAVETPFKPFPMDNDTTKKLKEELTLKASELFEP
FREEISKVATDLQSMKVGETRVITLEEVRSVITALDNLINEARNLKNLVVKELTPLIPATDMRLKLSLRQVSSLIDGGVI
KKLENWKTLLAFYNKVKAFYVSQQVLRLSGSEIVGRIRTDQEVHAILMKEIDNWGAPDELKTYLKNNITEKNVRNSLQIM
LSHVDFEYKELLSKYFDNPTQAFNGITEIINLSRAALVSLNDPHYQNAVESKIESGLNYDAFKNIAKEIGAKSGQSLVIN
ASLASLDRYANKVDPATFGRLVSRRWKETRLIGEFSKTVSDTFSELEIVKKPDEVYKVYYRGRITSAGTKSFEIKFKDLY
AVWFKDDNVQGKVKYTASEVFKNFWQNYVDAWNAAPFGRYYFNTVFVAVSTTFLEIIFAAMAAFAFAKLDFFGKNFLFTL
FLATMMVPGEVLLVPNFITLTAFGWIDTYYALIVPWVVSVFAIFLLRQHFMTIPDELFDAAKIDGMSKWKFLWRIMVPLA
KPAVITGALLKFVGSWNAFLWVLIVTKSPEYRTLPVGLQNFSSATGTEYNLLMSAATFSIVPVIILFLVTQKYFIAGIAR
SGLK

Sequences:

>Translated_804_residues
MKYTTKTLIQTLVYLIIVAGALLMLIPFAWMLDTSFKASSEVSSWPPKWTTKNAKSEVEFQTKLKYKTTGAGIDLSSLSL
SEFRNFAALLGSAAGKDTLVVMLDDDPILRGTVTLRLTDETGQAPAYAKNIDKATYAEVVSEFEEVKSNAPSAYEKELRN
IFTDNPSDFIDDFLYVAEFSDEGFARRVMFVANLSASLEGAIGNLKRAVETPFKPFPMDNDTTKKLKEELTLKASELFEP
FREEISKVATDLQSMKVGETRVITLEEVRSVITALDNLINEARNLKNLVVKELTPLIPATDMRLKLSLRQVSSLIDGGVI
KKLENWKTLLAFYNKVKAFYVSQQVLRLSGSEIVGRIRTDQEVHAILMKEIDNWGAPDELKTYLKNNITEKNVRNSLQIM
LSHVDFEYKELLSKYFDNPTQAFNGITEIINLSRAALVSLNDPHYQNAVESKIESGLNYDAFKNIAKEIGAKSGQSLVIN
ASLASLDRYANKVDPATFGRLVSRRWKETRLIGEFSKTVSDTFSELEIVKKPDEVYKVYYRGRITSAGTKSFEIKFKDLY
AVWFKDDNVQGKVKYTASEVFKNFWQNYVDAWNAAPFGRYYFNTVFVAVSTTFLEIIFAAMAAFAFAKLDFFGKNFLFTL
FLATMMVPGEVLLVPNFITLTAFGWIDTYYALIVPWVVSVFAIFLLRQHFMTIPDELFDAAKIDGMSKWKFLWRIMVPLA
KPAVITGALLKFVGSWNAFLWVLIVTKSPEYRTLPVGLQNFSSATGTEYNLLMSAATFSIVPVIILFLVTQKYFIAGIAR
SGLK
>Mature_804_residues
MKYTTKTLIQTLVYLIIVAGALLMLIPFAWMLDTSFKASSEVSSWPPKWTTKNAKSEVEFQTKLKYKTTGAGIDLSSLSL
SEFRNFAALLGSAAGKDTLVVMLDDDPILRGTVTLRLTDETGQAPAYAKNIDKATYAEVVSEFEEVKSNAPSAYEKELRN
IFTDNPSDFIDDFLYVAEFSDEGFARRVMFVANLSASLEGAIGNLKRAVETPFKPFPMDNDTTKKLKEELTLKASELFEP
FREEISKVATDLQSMKVGETRVITLEEVRSVITALDNLINEARNLKNLVVKELTPLIPATDMRLKLSLRQVSSLIDGGVI
KKLENWKTLLAFYNKVKAFYVSQQVLRLSGSEIVGRIRTDQEVHAILMKEIDNWGAPDELKTYLKNNITEKNVRNSLQIM
LSHVDFEYKELLSKYFDNPTQAFNGITEIINLSRAALVSLNDPHYQNAVESKIESGLNYDAFKNIAKEIGAKSGQSLVIN
ASLASLDRYANKVDPATFGRLVSRRWKETRLIGEFSKTVSDTFSELEIVKKPDEVYKVYYRGRITSAGTKSFEIKFKDLY
AVWFKDDNVQGKVKYTASEVFKNFWQNYVDAWNAAPFGRYYFNTVFVAVSTTFLEIIFAAMAAFAFAKLDFFGKNFLFTL
FLATMMVPGEVLLVPNFITLTAFGWIDTYYALIVPWVVSVFAIFLLRQHFMTIPDELFDAAKIDGMSKWKFLWRIMVPLA
KPAVITGALLKFVGSWNAFLWVLIVTKSPEYRTLPVGLQNFSSATGTEYNLLMSAATFSIVPVIILFLVTQKYFIAGIAR
SGLK

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=226, Percent_Identity=34.5132743362832, Blast_Score=125, Evalue=1e-29,
Organism=Escherichia coli, GI1787571, Length=223, Percent_Identity=32.2869955156951, Blast_Score=110, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 90694; Mature: 90694

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYTTKTLIQTLVYLIIVAGALLMLIPFAWMLDTSFKASSEVSSWPPKWTTKNAKSEVEF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCH
QTKLKYKTTGAGIDLSSLSLSEFRNFAALLGSAAGKDTLVVMLDDDPILRGTVTLRLTDE
HHEEEEEECCCCCCHHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEEEEEECC
TGQAPAYAKNIDKATYAEVVSEFEEVKSNAPSAYEKELRNIFTDNPSDFIDDFLYVAEFS
CCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
DEGFARRVMFVANLSASLEGAIGNLKRAVETPFKPFPMDNDTTKKLKEELTLKASELFEP
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
FREEISKVATDLQSMKVGETRVITLEEVRSVITALDNLINEARNLKNLVVKELTPLIPAT
HHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DMRLKLSLRQVSSLIDGGVIKKLENWKTLLAFYNKVKAFYVSQQVLRLSGSEIVGRIRTD
CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCC
QEVHAILMKEIDNWGAPDELKTYLKNNITEKNVRNSLQIMLSHVDFEYKELLSKYFDNPT
HHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHH
QAFNGITEIINLSRAALVSLNDPHYQNAVESKIESGLNYDAFKNIAKEIGAKSGQSLVIN
HHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEE
ASLASLDRYANKVDPATFGRLVSRRWKETRLIGEFSKTVSDTFSELEIVKKPDEVYKVYY
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
RGRITSAGTKSFEIKFKDLYAVWFKDDNVQGKVKYTASEVFKNFWQNYVDAWNAAPFGRY
CCEECCCCCCEEEEEEEEEEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCHHH
YFNTVFVAVSTTFLEIIFAAMAAFAFAKLDFFGKNFLFTLFLATMMVPGEVLLVPNFITL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCEEEECCHHHH
TAFGWIDTYYALIVPWVVSVFAIFLLRQHFMTIPDELFDAAKIDGMSKWKFLWRIMVPLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHC
KPAVITGALLKFVGSWNAFLWVLIVTKSPEYRTLPVGLQNFSSATGTEYNLLMSAATFSI
CHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEECCCCHHHCCCCCCCCHHHHHHHHHHHH
VPVIILFLVTQKYFIAGIARSGLK
HHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKYTTKTLIQTLVYLIIVAGALLMLIPFAWMLDTSFKASSEVSSWPPKWTTKNAKSEVEF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCH
QTKLKYKTTGAGIDLSSLSLSEFRNFAALLGSAAGKDTLVVMLDDDPILRGTVTLRLTDE
HHEEEEEECCCCCCHHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEEEEEECC
TGQAPAYAKNIDKATYAEVVSEFEEVKSNAPSAYEKELRNIFTDNPSDFIDDFLYVAEFS
CCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
DEGFARRVMFVANLSASLEGAIGNLKRAVETPFKPFPMDNDTTKKLKEELTLKASELFEP
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
FREEISKVATDLQSMKVGETRVITLEEVRSVITALDNLINEARNLKNLVVKELTPLIPAT
HHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DMRLKLSLRQVSSLIDGGVIKKLENWKTLLAFYNKVKAFYVSQQVLRLSGSEIVGRIRTD
CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCC
QEVHAILMKEIDNWGAPDELKTYLKNNITEKNVRNSLQIMLSHVDFEYKELLSKYFDNPT
HHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHH
QAFNGITEIINLSRAALVSLNDPHYQNAVESKIESGLNYDAFKNIAKEIGAKSGQSLVIN
HHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEE
ASLASLDRYANKVDPATFGRLVSRRWKETRLIGEFSKTVSDTFSELEIVKKPDEVYKVYY
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
RGRITSAGTKSFEIKFKDLYAVWFKDDNVQGKVKYTASEVFKNFWQNYVDAWNAAPFGRY
CCEECCCCCCEEEEEEEEEEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCHHH
YFNTVFVAVSTTFLEIIFAAMAAFAFAKLDFFGKNFLFTLFLATMMVPGEVLLVPNFITL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCEEEECCHHHH
TAFGWIDTYYALIVPWVVSVFAIFLLRQHFMTIPDELFDAAKIDGMSKWKFLWRIMVPLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHC
KPAVITGALLKFVGSWNAFLWVLIVTKSPEYRTLPVGLQNFSSATGTEYNLLMSAATFSI
CHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEECCCCHHHCCCCCCCCHHHHHHHHHHHH
VPVIILFLVTQKYFIAGIARSGLK
HHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]