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The map label for this gene is 238925529

Identifier: 238925529

GI number: 238925529

Start: 3034765

End: 3035403

Strand: Reverse

Name: 238925529

Synonym: EUBREC_3185

Alternate gene names: NA

Gene position: 3035403-3034765 (Counterclockwise)

Preceding gene: 238925530

Following gene: 238925528

Centisome position: 87.99

GC content: 31.3

Gene sequence:

>639_bases
ATGACAAATAAAAAAAATAAAGCAAAAAGTTTTATAACTTGCAAGCAAAAGGGATCGAATCCGTACTTAATAAATAAAGG
AAGAGTTGTAATGGACGATAGAGAAATAATTAAACTATATAATTGCCGATCTGAGGATGCATTGCTAGAAACAGAGAAGA
AATATGGGAAACTTGTATCATTTATAATTGGCAAGCTGATAAAGAATCAGTTAGATGTTGAAGAATGTACAAATGATACA
TATTTAGGTGTCTGGTTTACGATTCCCCCAAAAACACCAGATAACTTGAAAGCTTATATTTTAAAAATTGCAAGGAATCA
GGCGCTAAAAAAGTATGAACATATTCATGCGGCAAAAAGAGATATAGATATGTGTTTGCCATATGAGGAATTGAGTAATT
ATCTGGCGAAAGTGGGAGGAGAAAATTGGGAAAATAATGAATTGAAAGATATTGTTGAGGATTTTTTGGAATCGTTGCAA
AAACCTCATCGACAAGTTTTTGTATTAAGATATTGGTACTTTATGTCGGTAAAAGAGATTATGAAATGTTGTAATATGAG
CAAAAGCAAAGTCGAAACAATCTTATTTAGAACAAGAAAAAAGCTGAGAGAACAATTAGCGGAAAGGAAGTATTTATGA

Upstream 100 bases:

>100_bases
ATTTTGCCAGAGACACTGACCTCTGGCTTTTTTATTAAAACACCAGCATGGAAAGGGTTAGGCACTGTTAACATCAAAAG
CTATATTCTGTGTAGCTGAA

Downstream 100 bases:

>100_bases
AAACTTTGAAATCAGATATTTTTTATGCAATGAATGAAATTAACGATAAATATATCCTAGAGGCTGCACAATGTTTAGAG
CAAAAAAAGAAAAGCGATAT

Product: putative RNA polymerase sigma factor (ECF subfamily)

Products: NA

Alternate protein names: RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; DNA-Directed RNA Polymeracialized Sigma Subunit

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MTNKKNKAKSFITCKQKGSNPYLINKGRVVMDDREIIKLYNCRSEDALLETEKKYGKLVSFIIGKLIKNQLDVEECTNDT
YLGVWFTIPPKTPDNLKAYILKIARNQALKKYEHIHAAKRDIDMCLPYEELSNYLAKVGGENWENNELKDIVEDFLESLQ
KPHRQVFVLRYWYFMSVKEIMKCCNMSKSKVETILFRTRKKLREQLAERKYL

Sequences:

>Translated_212_residues
MTNKKNKAKSFITCKQKGSNPYLINKGRVVMDDREIIKLYNCRSEDALLETEKKYGKLVSFIIGKLIKNQLDVEECTNDT
YLGVWFTIPPKTPDNLKAYILKIARNQALKKYEHIHAAKRDIDMCLPYEELSNYLAKVGGENWENNELKDIVEDFLESLQ
KPHRQVFVLRYWYFMSVKEIMKCCNMSKSKVETILFRTRKKLREQLAERKYL
>Mature_211_residues
TNKKNKAKSFITCKQKGSNPYLINKGRVVMDDREIIKLYNCRSEDALLETEKKYGKLVSFIIGKLIKNQLDVEECTNDTY
LGVWFTIPPKTPDNLKAYILKIARNQALKKYEHIHAAKRDIDMCLPYEELSNYLAKVGGENWENNELKDIVEDFLESLQK
PHRQVFVLRYWYFMSVKEIMKCCNMSKSKVETILFRTRKKLREQLAERKYL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25089; Mature: 24957

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNKKNKAKSFITCKQKGSNPYLINKGRVVMDDREIIKLYNCRSEDALLETEKKYGKLVS
CCCCCHHHHHHHHHHCCCCCCEEEECCEEEECHHHHHHHHCCCCCHHHHHHHHHHHHHHH
FIIGKLIKNQLDVEECTNDTYLGVWFTIPPKTPDNLKAYILKIARNQALKKYEHIHAAKR
HHHHHHHHHCCCHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DIDMCLPYEELSNYLAKVGGENWENNELKDIVEDFLESLQKPHRQVFVLRYWYFMSVKEI
HHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MKCCNMSKSKVETILFRTRKKLREQLAERKYL
HHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TNKKNKAKSFITCKQKGSNPYLINKGRVVMDDREIIKLYNCRSEDALLETEKKYGKLVS
CCCCHHHHHHHHHHCCCCCCEEEECCEEEECHHHHHHHHCCCCCHHHHHHHHHHHHHHH
FIIGKLIKNQLDVEECTNDTYLGVWFTIPPKTPDNLKAYILKIARNQALKKYEHIHAAKR
HHHHHHHHHCCCHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DIDMCLPYEELSNYLAKVGGENWENNELKDIVEDFLESLQKPHRQVFVLRYWYFMSVKEI
HHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MKCCNMSKSKVETILFRTRKKLREQLAERKYL
HHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA