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The map label for this gene is ytrB [H]

Identifier: 238925439

GI number: 238925439

Start: 2955736

End: 2956665

Strand: Reverse

Name: ytrB [H]

Synonym: EUBREC_3094

Alternate gene names: 238925439

Gene position: 2956665-2955736 (Counterclockwise)

Preceding gene: 238925440

Following gene: 238925438

Centisome position: 85.71

GC content: 41.61

Gene sequence:

>930_bases
ATGCACACCTATTTTAATTGTGGGAAAGCAAAGGAGAGAGTTATGCTAAGGGTTCGTGAATTGGATAAGGAAATGTCCGG
GGAGGACAGGTTTCATCTGGAAAACATATCGTTTCATTTGCCAAAGGGTTATATATGCGGCCTTGTAGGAGAAAACGGAG
CAGGCAAGACAACTCTTTTACGCTGCCTGATGGGATTGTATAGGTCAACAGGAGACATAGTGATAGATGGACACAATTTA
AACAGCGATGAGGCAGCCGCCAGGGAAGTAATAGCGGTAGTAGGTGATGAGGGATTTTTTGATGAGAATATAAATCTCGA
AAAGCTCGGAAAATACTATGGGCAGATGTATGTGAGGTTTGATATGGAAAAGTATCTGGGATATCTTGAAAGATTTAACC
TTGATAGAAAGCAGAAATACAAAAAACTGTCCAAAGGTATGAAAATCAAAGCGCAGCTTGCATTTGCACTGTCGTATGGA
GCAAAGCTTTTTTTGTTCGATGAGCCTACTGCAGGGCTTGACAAGCACTTCAGGGAGGATTTTTTAAGGCTGTGTACAGA
GCTTGTGTCGGATGGTGAAAAAAGCATTATCATTTCTTCTCATATTACGGAGGATCTGGACAGAATAGCAGACTATATTG
CATATATGCAGGCAGGGAGGCTGTTGTTTTTTAAGCCTAAGGATGCTGCGTGTGAGCATTTTCGGATAGTTACAGGACCT
GTATATAAATGTAAGCTGATACCCAGGGAAGCAGTGGTTTACATGGAAGAAGGCACATACAGCTCCACTGCCATGGTTAT
AAGGGATAAATGTATTCTGGTAGACAGAGAGCTTCAAGAGCATACTCCGGATATCAGGGAGCTGATACATTATCTGGTGA
AAGGGGGAAAGGAAAATGCCGAAAATATTGTGGAAAAATATTTTGGATAG

Upstream 100 bases:

>100_bases
TTTTCTTGATTGAGTTGTAATATTGGTCGTAGTACATAAATATTTAGAATATATCTTGACAAAGGTGTGCATATACTGTA
TATATTTGTATATACAGTAT

Downstream 100 bases:

>100_bases
CAGCAGGCGGGAGCTTGTTTTGACCATAGTTATGATACCATTATTCTGGCTTGGAATTACAGAAGGCTCATTTGGAGGCC
TGAATCAGGTAATGTATATA

Product: ABC transporter, ATP-binding protein

Products: ADP; phosphate; L-glutamine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MHTYFNCGKAKERVMLRVRELDKEMSGEDRFHLENISFHLPKGYICGLVGENGAGKTTLLRCLMGLYRSTGDIVIDGHNL
NSDEAAAREVIAVVGDEGFFDENINLEKLGKYYGQMYVRFDMEKYLGYLERFNLDRKQKYKKLSKGMKIKAQLAFALSYG
AKLFLFDEPTAGLDKHFREDFLRLCTELVSDGEKSIIISSHITEDLDRIADYIAYMQAGRLLFFKPKDAACEHFRIVTGP
VYKCKLIPREAVVYMEEGTYSSTAMVIRDKCILVDRELQEHTPDIRELIHYLVKGGKENAENIVEKYFG

Sequences:

>Translated_309_residues
MHTYFNCGKAKERVMLRVRELDKEMSGEDRFHLENISFHLPKGYICGLVGENGAGKTTLLRCLMGLYRSTGDIVIDGHNL
NSDEAAAREVIAVVGDEGFFDENINLEKLGKYYGQMYVRFDMEKYLGYLERFNLDRKQKYKKLSKGMKIKAQLAFALSYG
AKLFLFDEPTAGLDKHFREDFLRLCTELVSDGEKSIIISSHITEDLDRIADYIAYMQAGRLLFFKPKDAACEHFRIVTGP
VYKCKLIPREAVVYMEEGTYSSTAMVIRDKCILVDRELQEHTPDIRELIHYLVKGGKENAENIVEKYFG
>Mature_309_residues
MHTYFNCGKAKERVMLRVRELDKEMSGEDRFHLENISFHLPKGYICGLVGENGAGKTTLLRCLMGLYRSTGDIVIDGHNL
NSDEAAAREVIAVVGDEGFFDENINLEKLGKYYGQMYVRFDMEKYLGYLERFNLDRKQKYKKLSKGMKIKAQLAFALSYG
AKLFLFDEPTAGLDKHFREDFLRLCTELVSDGEKSIIISSHITEDLDRIADYIAYMQAGRLLFFKPKDAACEHFRIVTGP
VYKCKLIPREAVVYMEEGTYSSTAMVIRDKCILVDRELQEHTPDIRELIHYLVKGGKENAENIVEKYFG

Specific function: Part of the ABC transporter complex YtrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI116734710, Length=244, Percent_Identity=28.2786885245902, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI45446740, Length=211, Percent_Identity=28.9099526066351, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI47078218, Length=211, Percent_Identity=28.9099526066351, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI150417984, Length=215, Percent_Identity=29.7674418604651, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI21536376, Length=199, Percent_Identity=28.1407035175879, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI105990541, Length=193, Percent_Identity=30.0518134715026, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI27881501, Length=201, Percent_Identity=26.3681592039801, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI30795238, Length=197, Percent_Identity=26.9035532994924, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI31657092, Length=197, Percent_Identity=26.3959390862944, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI27477115, Length=248, Percent_Identity=29.8387096774194, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI27262624, Length=232, Percent_Identity=25.8620689655172, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI27262626, Length=232, Percent_Identity=25.8620689655172, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI6005701, Length=200, Percent_Identity=24, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI1787029, Length=201, Percent_Identity=28.8557213930348, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1786319, Length=219, Percent_Identity=29.6803652968037, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1786398, Length=226, Percent_Identity=28.3185840707965, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1788210, Length=200, Percent_Identity=33, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790739, Length=213, Percent_Identity=28.6384976525822, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1789991, Length=208, Percent_Identity=29.8076923076923, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI48995001, Length=221, Percent_Identity=26.6968325791855, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI48994943, Length=208, Percent_Identity=25.4807692307692, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87081791, Length=232, Percent_Identity=28.8793103448276, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI87081709, Length=209, Percent_Identity=27.2727272727273, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI87081782, Length=216, Percent_Identity=28.7037037037037, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI2367384, Length=205, Percent_Identity=28.780487804878, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788540, Length=181, Percent_Identity=30.939226519337, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788897, Length=217, Percent_Identity=29.4930875576037, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790190, Length=208, Percent_Identity=28.3653846153846, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788506, Length=187, Percent_Identity=29.4117647058824, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788472, Length=227, Percent_Identity=28.1938325991189, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786872, Length=190, Percent_Identity=28.9473684210526, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1789586, Length=195, Percent_Identity=29.2307692307692, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17510237, Length=215, Percent_Identity=28.3720930232558, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI71983516, Length=217, Percent_Identity=28.110599078341, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71983523, Length=217, Percent_Identity=28.110599078341, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71983510, Length=217, Percent_Identity=28.110599078341, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17565586, Length=281, Percent_Identity=28.1138790035587, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI115533608, Length=191, Percent_Identity=28.7958115183246, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71984940, Length=192, Percent_Identity=29.6875, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323959, Length=206, Percent_Identity=27.6699029126214, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI281362751, Length=209, Percent_Identity=30.622009569378, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24650853, Length=218, Percent_Identity=28.4403669724771, Blast_Score=85, Evalue=7e-17,
Organism=Drosophila melanogaster, GI24650855, Length=218, Percent_Identity=28.8990825688073, Blast_Score=84, Evalue=9e-17,
Organism=Drosophila melanogaster, GI221512771, Length=229, Percent_Identity=29.2576419213974, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24666092, Length=256, Percent_Identity=25.390625, Blast_Score=79, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24582014, Length=196, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24582012, Length=196, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI85725262, Length=196, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI28574150, Length=204, Percent_Identity=26.4705882352941, Blast_Score=75, Evalue=8e-14,
Organism=Drosophila melanogaster, GI21357907, Length=204, Percent_Identity=29.9019607843137, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI116007328, Length=204, Percent_Identity=26.4705882352941, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24643674, Length=215, Percent_Identity=26.5116279069767, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24648314, Length=221, Percent_Identity=25.3393665158371, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 35500; Mature: 35500

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTYFNCGKAKERVMLRVRELDKEMSGEDRFHLENISFHLPKGYICGLVGENGAGKTTLL
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCEEECCCCEEEEEECCCCCCHHHHH
RCLMGLYRSTGDIVIDGHNLNSDEAAAREVIAVVGDEGFFDENINLEKLGKYYGQMYVRF
HHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHEEEEE
DMEKYLGYLERFNLDRKQKYKKLSKGMKIKAQLAFALSYGAKLFLFDEPTAGLDKHFRED
EHHHHHHHHHHCCCCHHHHHHHHHCCCEEHHHHHEEECCCCEEEEEECCCCCHHHHHHHH
FLRLCTELVSDGEKSIIISSHITEDLDRIADYIAYMQAGRLLFFKPKDAACEHFRIVTGP
HHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEECC
VYKCKLIPREAVVYMEEGTYSSTAMVIRDKCILVDRELQEHTPDIRELIHYLVKGGKENA
CEEEEECCCCEEEEEECCCCCCEEEEEECEEEEEECHHHHCCCHHHHHHHHHHCCCCCCH
ENIVEKYFG
HHHHHHHCC
>Mature Secondary Structure
MHTYFNCGKAKERVMLRVRELDKEMSGEDRFHLENISFHLPKGYICGLVGENGAGKTTLL
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCEEECCCCEEEEEECCCCCCHHHHH
RCLMGLYRSTGDIVIDGHNLNSDEAAAREVIAVVGDEGFFDENINLEKLGKYYGQMYVRF
HHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHEEEEE
DMEKYLGYLERFNLDRKQKYKKLSKGMKIKAQLAFALSYGAKLFLFDEPTAGLDKHFRED
EHHHHHHHHHHCCCCHHHHHHHHHCCCEEHHHHHEEECCCCEEEEEECCCCCHHHHHHHH
FLRLCTELVSDGEKSIIISSHITEDLDRIADYIAYMQAGRLLFFKPKDAACEHFRIVTGP
HHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEECC
VYKCKLIPREAVVYMEEGTYSSTAMVIRDKCILVDRELQEHTPDIRELIHYLVKGGKENA
CEEEEECCCCEEEEEECCCCCCEEEEEECEEEEEECHHHHCCCHHHHHHHHHHCCCCCCH
ENIVEKYFG
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-glutamine [Periplasm]; H2O [C]

Specific reaction: ATP + L-glutamine [Periplasm] + H2O = ADP + phosphate + L-glutamine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]