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The map label for this gene is yciR [C]

Identifier: 238924874

GI number: 238924874

Start: 2397888

End: 2399531

Strand: Direct

Name: yciR [C]

Synonym: EUBREC_2525

Alternate gene names: 238924874

Gene position: 2397888-2399531 (Clockwise)

Preceding gene: 238924873

Following gene: 238924880

Centisome position: 69.51

GC content: 41.06

Gene sequence:

>1644_bases
ATGATAGAAAACACGATATACAAGGAATTTATTGATAAAATTTCAGAATTATCAGACGGGATATATCCTATCATCACCGA
CCTGGATAATGACTTATCTTACGTACCGGACAAGACAGCTGATTTTTTCGGCTTTGAAGCCGGCGAGCATACATGCTTCT
TTGAACAGCTGAGCTCTTGTGTCAACGACGTTGACCTGCCGGAATATAAGCGGGAAATCCGCTATCGCTTAAATGGTGAA
AAACCGGATGATATATTTTATGTCCGCATGGGAAAGCATACCAAAGAATATATGATGGGATTTTATTCTGATATTTTTAC
CGGTGATGACGGACACCGCTACCATGTCCTCGTGCTCAGAAACGAAAATACCCTTCCGGATATCGACCCATATACATATC
TTTATGGTCAGTCAAAGTTTGAAAGAGACATCAACGGCTATATCATGGAAAACAGGTCTGTAGCCATAATCGAGGTGGAG
ATAGGTCATATAGATGAGTTCAATATACTTTATGGTTCCAATTTCAACACTGCAATCCAGCGTGAGCTTGCGCTCAAGTT
CATCTACATGATGGATGGCAGCACCGCTACCTACTATATGAATAATTGCAAGTTTGTATTTGTGGTAAAGGAAGCAGACC
GTGCCTTGGCCGAGTCCTTCTATCAGAAAATTGCCGATACAATAAAGTCCATGTATTTCTTTAAATGCTTTAAATTTGAG
TTTGATATATATGCTGCGTGTCTGATTCTCAAGGATTATGATGGTGATACCTCAACTGTCATCAGCAAGGTAGAGTATAC
TCTAGACCGTGCGAAGGAGCTTCACAGCTCTGATTTGTTATTTTTCAATGATATGGTCAGGTTCAATGGCAGCTCGCATA
TAGATATCATGAAAATCATTCATCAGTCGGTTATCAATAGCTGTGATGGGTTTTTTGTAGAGTTTCAGCCCATTGTAAAG
GCTTGCAATGGTGAAATAATGGGTGCTGAAGCTCTGGTACGCTGGAAAAAGGAGCCTTTTGGCACGGTGCCACCCGGACT
GTTTATCGACTGGCTTGAGGATACCCCGGCTATGTATGAGCTAGGAAATTATATCATGAGAACTGCAATAAGCGCAGCCA
GTGAATTTGCAAAGATAAAACCGGGCTTTTTCATCAATGTAAATGCATCCTCAGAGCAGCTTGAAAAGGAAAACTTTGTA
AAAGATACTCTGGCAATTCTTAAAGAGTATGATTTTCCACCTTCACAGCTGTGGATAGAGATTACAGAGCGATGCAGAGA
TCTGCCTATATCTATGATAAAGAAAACCGTCACTGCATTCAGGGAAGCCGGAATCCACATCACTATGGATGACTATGGCA
CAGGAAGCTCTTCATCTCAGATGATGCTTGAGCTTCCTGTAGAGGGTATCAAGATAGATATGTTCTTTGTTAAAGACATT
CTCGAGGAGAAAAAGAAGCAGGCACTTGTAATCGGAATGATTAATTTTGCCAATGCCGCAGACTTAAAGATATGTATTGA
AGGCATAGAAAATGATAACCTTGAGAGCTATCTCAGGCAGTTCGACGTCACCTGGTTTCAGGGCTATCACTACTCTAGGT
CTATCTGTCAGGATGAGCTTATGAAGCTTCTTATAAAGCCATAG

Upstream 100 bases:

>100_bases
TATCATTTTCAGAGTCCAACTAACTTATTGTATATAATGCATACATATGCTATAATAATAAAAGAATTTTGTGCATTATA
CACATATGGAGTTTTAATTT

Downstream 100 bases:

>100_bases
CCCTGGATATTACTCAAGATTTTCCTTAAATACTGTCAGTGCGCCATTTTTCTTTAAAATCAGCATGACAATTGCTGCCA
CTATGCTTCCGGCCACTGTA

Product: phytochrome-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 547; Mature: 547

Protein sequence:

>547_residues
MIENTIYKEFIDKISELSDGIYPIITDLDNDLSYVPDKTADFFGFEAGEHTCFFEQLSSCVNDVDLPEYKREIRYRLNGE
KPDDIFYVRMGKHTKEYMMGFYSDIFTGDDGHRYHVLVLRNENTLPDIDPYTYLYGQSKFERDINGYIMENRSVAIIEVE
IGHIDEFNILYGSNFNTAIQRELALKFIYMMDGSTATYYMNNCKFVFVVKEADRALAESFYQKIADTIKSMYFFKCFKFE
FDIYAACLILKDYDGDTSTVISKVEYTLDRAKELHSSDLLFFNDMVRFNGSSHIDIMKIIHQSVINSCDGFFVEFQPIVK
ACNGEIMGAEALVRWKKEPFGTVPPGLFIDWLEDTPAMYELGNYIMRTAISAASEFAKIKPGFFINVNASSEQLEKENFV
KDTLAILKEYDFPPSQLWIEITERCRDLPISMIKKTVTAFREAGIHITMDDYGTGSSSSQMMLELPVEGIKIDMFFVKDI
LEEKKKQALVIGMINFANAADLKICIEGIENDNLESYLRQFDVTWFQGYHYSRSICQDELMKLLIKP

Sequences:

>Translated_547_residues
MIENTIYKEFIDKISELSDGIYPIITDLDNDLSYVPDKTADFFGFEAGEHTCFFEQLSSCVNDVDLPEYKREIRYRLNGE
KPDDIFYVRMGKHTKEYMMGFYSDIFTGDDGHRYHVLVLRNENTLPDIDPYTYLYGQSKFERDINGYIMENRSVAIIEVE
IGHIDEFNILYGSNFNTAIQRELALKFIYMMDGSTATYYMNNCKFVFVVKEADRALAESFYQKIADTIKSMYFFKCFKFE
FDIYAACLILKDYDGDTSTVISKVEYTLDRAKELHSSDLLFFNDMVRFNGSSHIDIMKIIHQSVINSCDGFFVEFQPIVK
ACNGEIMGAEALVRWKKEPFGTVPPGLFIDWLEDTPAMYELGNYIMRTAISAASEFAKIKPGFFINVNASSEQLEKENFV
KDTLAILKEYDFPPSQLWIEITERCRDLPISMIKKTVTAFREAGIHITMDDYGTGSSSSQMMLELPVEGIKIDMFFVKDI
LEEKKKQALVIGMINFANAADLKICIEGIENDNLESYLRQFDVTWFQGYHYSRSICQDELMKLLIKP
>Mature_547_residues
MIENTIYKEFIDKISELSDGIYPIITDLDNDLSYVPDKTADFFGFEAGEHTCFFEQLSSCVNDVDLPEYKREIRYRLNGE
KPDDIFYVRMGKHTKEYMMGFYSDIFTGDDGHRYHVLVLRNENTLPDIDPYTYLYGQSKFERDINGYIMENRSVAIIEVE
IGHIDEFNILYGSNFNTAIQRELALKFIYMMDGSTATYYMNNCKFVFVVKEADRALAESFYQKIADTIKSMYFFKCFKFE
FDIYAACLILKDYDGDTSTVISKVEYTLDRAKELHSSDLLFFNDMVRFNGSSHIDIMKIIHQSVINSCDGFFVEFQPIVK
ACNGEIMGAEALVRWKKEPFGTVPPGLFIDWLEDTPAMYELGNYIMRTAISAASEFAKIKPGFFINVNASSEQLEKENFV
KDTLAILKEYDFPPSQLWIEITERCRDLPISMIKKTVTAFREAGIHITMDDYGTGSSSSQMMLELPVEGIKIDMFFVKDI
LEEKKKQALVIGMINFANAADLKICIEGIENDNLESYLRQFDVTWFQGYHYSRSICQDELMKLLIKP

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=421, Percent_Identity=21.1401425178147, Blast_Score=129, Evalue=7e-31,
Organism=Escherichia coli, GI87081743, Length=230, Percent_Identity=33.4782608695652, Blast_Score=117, Evalue=3e-27,
Organism=Escherichia coli, GI1787055, Length=228, Percent_Identity=30.2631578947368, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI87081921, Length=232, Percent_Identity=31.0344827586207, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1788502, Length=243, Percent_Identity=26.7489711934156, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI87081845, Length=239, Percent_Identity=28.4518828451883, Blast_Score=99, Evalue=7e-22,
Organism=Escherichia coli, GI1790496, Length=230, Percent_Identity=24.3478260869565, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI226510982, Length=240, Percent_Identity=27.5, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1786507, Length=222, Percent_Identity=26.1261261261261, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI87081980, Length=232, Percent_Identity=26.2931034482759, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI87082096, Length=154, Percent_Identity=27.2727272727273, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788849, Length=227, Percent_Identity=22.4669603524229, Blast_Score=63, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR000253
- InterPro:   IPR000014
- InterPro:   IPR008984 [H]

Pfam domain/function: PF00563 EAL; PF00498 FHA; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 63268; Mature: 63268

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIENTIYKEFIDKISELSDGIYPIITDLDNDLSYVPDKTADFFGFEAGEHTCFFEQLSSC
CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHH
VNDVDLPEYKREIRYRLNGEKPDDIFYVRMGKHTKEYMMGFYSDIFTGDDGHRYHVLVLR
HCCCCCHHHHHHHHHEECCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEEEE
NENTLPDIDPYTYLYGQSKFERDINGYIMENRSVAIIEVEIGHIDEFNILYGSNFNTAIQ
CCCCCCCCCCCEEEECCHHHHCCCCCEEEECCCEEEEEEEECCCCCEEEEECCCCCHHHH
RELALKFIYMMDGSTATYYMNNCKFVFVVKEADRALAESFYQKIADTIKSMYFFKCFKFE
HHHHHEEEEEECCCEEEEEECCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
FDIYAACLILKDYDGDTSTVISKVEYTLDRAKELHSSDLLFFNDMVRFNGSSHIDIMKII
CCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCHHHHHHH
HQSVINSCDGFFVEFQPIVKACNGEIMGAEALVRWKKEPFGTVPPGLFIDWLEDTPAMYE
HHHHHHCCCCEEEEEHHHHHHCCCCEECHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHH
LGNYIMRTAISAASEFAKIKPGFFINVNASSEQLEKENFVKDTLAILKEYDFPPSQLWIE
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
ITERCRDLPISMIKKTVTAFREAGIHITMDDYGTGSSSSQMMLELPVEGIKIDMFFVKDI
HHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCEEEEHHHHHHH
LEEKKKQALVIGMINFANAADLKICIEGIENDNLESYLRQFDVTWFQGYHYSRSICQDEL
HHHHHCCEEEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHCCHHEECCCHHHHHHHHHH
MKLLIKP
HHHHCCC
>Mature Secondary Structure
MIENTIYKEFIDKISELSDGIYPIITDLDNDLSYVPDKTADFFGFEAGEHTCFFEQLSSC
CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHH
VNDVDLPEYKREIRYRLNGEKPDDIFYVRMGKHTKEYMMGFYSDIFTGDDGHRYHVLVLR
HCCCCCHHHHHHHHHEECCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEEEE
NENTLPDIDPYTYLYGQSKFERDINGYIMENRSVAIIEVEIGHIDEFNILYGSNFNTAIQ
CCCCCCCCCCCEEEECCHHHHCCCCCEEEECCCEEEEEEEECCCCCEEEEECCCCCHHHH
RELALKFIYMMDGSTATYYMNNCKFVFVVKEADRALAESFYQKIADTIKSMYFFKCFKFE
HHHHHEEEEEECCCEEEEEECCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
FDIYAACLILKDYDGDTSTVISKVEYTLDRAKELHSSDLLFFNDMVRFNGSSHIDIMKII
CCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCHHHHHHH
HQSVINSCDGFFVEFQPIVKACNGEIMGAEALVRWKKEPFGTVPPGLFIDWLEDTPAMYE
HHHHHHCCCCEEEEEHHHHHHCCCCEECHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHH
LGNYIMRTAISAASEFAKIKPGFFINVNASSEQLEKENFVKDTLAILKEYDFPPSQLWIE
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
ITERCRDLPISMIKKTVTAFREAGIHITMDDYGTGSSSSQMMLELPVEGIKIDMFFVKDI
HHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCEEEEHHHHHHH
LEEKKKQALVIGMINFANAADLKICIEGIENDNLESYLRQFDVTWFQGYHYSRSICQDEL
HHHHHCCEEEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHCCHHEECCCHHHHHHHHHH
MKLLIKP
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]