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The map label for this gene is ydaM [H]

Identifier: 238922330

GI number: 238922330

Start: 534860

End: 536449

Strand: Reverse

Name: ydaM [H]

Synonym: EUBELI_20566

Alternate gene names: 238922330

Gene position: 536449-534860 (Counterclockwise)

Preceding gene: 238922331

Following gene: 238922328

Centisome position: 85.59

GC content: 36.42

Gene sequence:

>1590_bases
ATGCAATTAAGGCTATGTAGAGAATTGTTAGCGGCGAATGCGGTTTGTTTAATATCAGAACGCACTTTTTTCACAATTTT
AATGTGTGAAAAGGGTGCGTTTTTTGTCAATATATGTTACTATGTTGTTAGTTATAAATGTATTGAATTGGAGATGCATA
TGAAGACGAAAAAGTACGAATCAATTATGAATAAAGCAATGAAGGCAGCAATGAATTATGAAAATCCAGATGATCAGATT
AATGAATTTATCAGATTTTTTGGAGAACATATCGGGTCTGAAAGAATATACATATTTGAAGACAATATTAGAAAAAAGGT
TACTAATAATACTTATGAGTGGTGCGCGGATGGGATTGAGCCTCAGATAAAGTTTCTTCAGAATGTAGATATGTCAATTA
TAGACTGGTGGTATACATCATTTAATGATGGAAGAAATATTAGTACTAAGGATATTGAGGAGATTAAGGATGAATATCCT
GCAGCATATGAACTGCTCAAAGTTCAGAATGTAAAGAGCCTGGCAGTAAGTCCATTCAGATATAAGGACGAGATATATGG
CTTCTTTGGTGTTGACAATCCACCAGAAAGTGAGATGGACGAGATTTCGCGCTTTCTTGATATGATAGGCACATTTTTAG
TACTGCTATTAAAACAGAGAAATGTATTTAAAAAATCCAAGCGTGAGGCTATGTTCAGCGCATATTCAGCACTTGCCGGA
ATATATCTGTCAATGCATATTATCAATTTAAAGACAGGGGAATTTCATGAAATAAAGTCAACAGATTTCATAAGGGATAA
TATGATAAAAGGCGAGCATACTTTTGCAGAACAGATAAATAGTGTAATGAAGATTCTTCCTTCCAGGAAGTATGTAGAAA
GTGTACTTGAATTTGTTGATATATCAACACTTCCGGAGAGAATGAAGAACAAGACTACGATTGTTCATGAATTCCTTGGA
AATTACTCTGGATGGTGTCGTGAAAGATTCATAAGGGTAGATGAGGATAGCAATGGAGAACTGTGGCATGTTGTATATGC
CGTTGAAGTTATCGATGCAGAGAAACGTAAGGAGAACAGGCTTTTATATCTTTCAGAAACAGACCTTATGACGGGAATAA
GAAATAGAGGAAGCGGAGAGAAAGCAATTGCAGACCTTATTAAGGAAGAAACTAAGGGGCTTATGTGCCTTCTTGATTGT
GATAAGTTCAAGAATGTTAACGATACATATGGACATGTTGTCGGGGATGCAGTAATTATAGCGGTTGCAAGAAGTCTTCA
GAGTGTATGCAGGGAACATGATATATGCATGCGCCTGGGAGGTGATGAATTTGCAATGTTCATCCCGGGAATAACAGAAA
CTAAAGATGCTGAAAGCTTCACGATGAGAGTATTTGCAAAGCTTAAGGACATAAGAATCCCAGAGATGGGAGATGAGAAG
ATATATGTAAGCATGGGTGAAGCGTTTTATAAAGGGGAAAAGGATATTGATTTTGATGAACTGTACAGACATGCCGACAG
TGCCATGTATAAGAGCAAGAATAATACAGGCTACTGTGCGACACTTGAATGCGTAACTAAGACATTTTAA

Upstream 100 bases:

>100_bases
AAAGCGAGTTCAGCTATTACAGAGATTTTTCGTGCAGGAGAACTCGCAGGAGCTGAGGAAGCATTTGAAGAAGTTGAGAA
ACAGTACAATATAACAGTGA

Downstream 100 bases:

>100_bases
TCAGTTGTATGCTTTAAGAAATTAATAAGTTTTTTGGCTGCAATGCTTTCGGTATGTCTTGATTCACGTATAAGAACAAT
ATCTCTGTCAGGTGCGGATT

Product: histidine ammonia-lyase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 529; Mature: 529

Protein sequence:

>529_residues
MQLRLCRELLAANAVCLISERTFFTILMCEKGAFFVNICYYVVSYKCIELEMHMKTKKYESIMNKAMKAAMNYENPDDQI
NEFIRFFGEHIGSERIYIFEDNIRKKVTNNTYEWCADGIEPQIKFLQNVDMSIIDWWYTSFNDGRNISTKDIEEIKDEYP
AAYELLKVQNVKSLAVSPFRYKDEIYGFFGVDNPPESEMDEISRFLDMIGTFLVLLLKQRNVFKKSKREAMFSAYSALAG
IYLSMHIINLKTGEFHEIKSTDFIRDNMIKGEHTFAEQINSVMKILPSRKYVESVLEFVDISTLPERMKNKTTIVHEFLG
NYSGWCRERFIRVDEDSNGELWHVVYAVEVIDAEKRKENRLLYLSETDLMTGIRNRGSGEKAIADLIKEETKGLMCLLDC
DKFKNVNDTYGHVVGDAVIIAVARSLQSVCREHDICMRLGGDEFAMFIPGITETKDAESFTMRVFAKLKDIRIPEMGDEK
IYVSMGEAFYKGEKDIDFDELYRHADSAMYKSKNNTGYCATLECVTKTF

Sequences:

>Translated_529_residues
MQLRLCRELLAANAVCLISERTFFTILMCEKGAFFVNICYYVVSYKCIELEMHMKTKKYESIMNKAMKAAMNYENPDDQI
NEFIRFFGEHIGSERIYIFEDNIRKKVTNNTYEWCADGIEPQIKFLQNVDMSIIDWWYTSFNDGRNISTKDIEEIKDEYP
AAYELLKVQNVKSLAVSPFRYKDEIYGFFGVDNPPESEMDEISRFLDMIGTFLVLLLKQRNVFKKSKREAMFSAYSALAG
IYLSMHIINLKTGEFHEIKSTDFIRDNMIKGEHTFAEQINSVMKILPSRKYVESVLEFVDISTLPERMKNKTTIVHEFLG
NYSGWCRERFIRVDEDSNGELWHVVYAVEVIDAEKRKENRLLYLSETDLMTGIRNRGSGEKAIADLIKEETKGLMCLLDC
DKFKNVNDTYGHVVGDAVIIAVARSLQSVCREHDICMRLGGDEFAMFIPGITETKDAESFTMRVFAKLKDIRIPEMGDEK
IYVSMGEAFYKGEKDIDFDELYRHADSAMYKSKNNTGYCATLECVTKTF
>Mature_529_residues
MQLRLCRELLAANAVCLISERTFFTILMCEKGAFFVNICYYVVSYKCIELEMHMKTKKYESIMNKAMKAAMNYENPDDQI
NEFIRFFGEHIGSERIYIFEDNIRKKVTNNTYEWCADGIEPQIKFLQNVDMSIIDWWYTSFNDGRNISTKDIEEIKDEYP
AAYELLKVQNVKSLAVSPFRYKDEIYGFFGVDNPPESEMDEISRFLDMIGTFLVLLLKQRNVFKKSKREAMFSAYSALAG
IYLSMHIINLKTGEFHEIKSTDFIRDNMIKGEHTFAEQINSVMKILPSRKYVESVLEFVDISTLPERMKNKTTIVHEFLG
NYSGWCRERFIRVDEDSNGELWHVVYAVEVIDAEKRKENRLLYLSETDLMTGIRNRGSGEKAIADLIKEETKGLMCLLDC
DKFKNVNDTYGHVVGDAVIIAVARSLQSVCREHDICMRLGGDEFAMFIPGITETKDAESFTMRVFAKLKDIRIPEMGDEK
IYVSMGEAFYKGEKDIDFDELYRHADSAMYKSKNNTGYCATLECVTKTF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=172, Percent_Identity=33.7209302325581, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1786584, Length=174, Percent_Identity=33.3333333333333, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1787541, Length=169, Percent_Identity=36.094674556213, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI1787262, Length=175, Percent_Identity=29.7142857142857, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1788381, Length=176, Percent_Identity=28.4090909090909, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI87082007, Length=162, Percent_Identity=30.2469135802469, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1787056, Length=127, Percent_Identity=35.4330708661417, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI145693134, Length=154, Percent_Identity=29.2207792207792, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1787802, Length=157, Percent_Identity=29.9363057324841, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI87081974, Length=153, Percent_Identity=29.4117647058824, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1788956, Length=157, Percent_Identity=32.484076433121, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1787816, Length=151, Percent_Identity=28.476821192053, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 61369; Mature: 61369

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLRLCRELLAANAVCLISERTFFTILMCEKGAFFVNICYYVVSYKCIELEMHMKTKKYE
CCHHHHHHHHHCCCEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHEEEEHHHHHHHHH
SIMNKAMKAAMNYENPDDQINEFIRFFGEHIGSERIYIFEDNIRKKVTNNTYEWCADGIE
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCHHHHHHCCCC
PQIKFLQNVDMSIIDWWYTSFNDGRNISTKDIEEIKDEYPAAYELLKVQNVKSLAVSPFR
HHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCHHHHHCCCCE
YKDEIYGFFGVDNPPESEMDEISRFLDMIGTFLVLLLKQRNVFKKSKREAMFSAYSALAG
EHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IYLSMHIINLKTGEFHEIKSTDFIRDNMIKGEHTFAEQINSVMKILPSRKYVESVLEFVD
HHHHEEEEEECCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ISTLPERMKNKTTIVHEFLGNYSGWCRERFIRVDEDSNGELWHVVYAVEVIDAEKRKENR
HHHHHHHHCCHHHHHHHHHCCCCHHHHHHCEECCCCCCCCEEEEEEEEHHHHHHHCCCCC
LLYLSETDLMTGIRNRGSGEKAIADLIKEETKGLMCLLDCDKFKNVNDTYGHVVGDAVII
EEEEECHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEECHHCCCCCCHHHHHHHHHHHH
AVARSLQSVCREHDICMRLGGDEFAMFIPGITETKDAESFTMRVFAKLKDIRIPEMGDEK
HHHHHHHHHHHHCCHHEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCE
IYVSMGEAFYKGEKDIDFDELYRHADSAMYKSKNNTGYCATLECVTKTF
EEEEECHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCCC
>Mature Secondary Structure
MQLRLCRELLAANAVCLISERTFFTILMCEKGAFFVNICYYVVSYKCIELEMHMKTKKYE
CCHHHHHHHHHCCCEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHEEEEHHHHHHHHH
SIMNKAMKAAMNYENPDDQINEFIRFFGEHIGSERIYIFEDNIRKKVTNNTYEWCADGIE
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCHHHHHHCCCC
PQIKFLQNVDMSIIDWWYTSFNDGRNISTKDIEEIKDEYPAAYELLKVQNVKSLAVSPFR
HHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCHHHHHCCCCE
YKDEIYGFFGVDNPPESEMDEISRFLDMIGTFLVLLLKQRNVFKKSKREAMFSAYSALAG
EHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IYLSMHIINLKTGEFHEIKSTDFIRDNMIKGEHTFAEQINSVMKILPSRKYVESVLEFVD
HHHHEEEEEECCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ISTLPERMKNKTTIVHEFLGNYSGWCRERFIRVDEDSNGELWHVVYAVEVIDAEKRKENR
HHHHHHHHCCHHHHHHHHHCCCCHHHHHHCEECCCCCCCCEEEEEEEEHHHHHHHCCCCC
LLYLSETDLMTGIRNRGSGEKAIADLIKEETKGLMCLLDCDKFKNVNDTYGHVVGDAVII
EEEEECHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEECHHCCCCCCHHHHHHHHHHHH
AVARSLQSVCREHDICMRLGGDEFAMFIPGITETKDAESFTMRVFAKLKDIRIPEMGDEK
HHHHHHHHHHHHCCHHEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCE
IYVSMGEAFYKGEKDIDFDELYRHADSAMYKSKNNTGYCATLECVTKTF
EEEEECHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]