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The map label for this gene is yecS [H]

Identifier: 238921539

GI number: 238921539

Start: 3581241

End: 3581912

Strand: Reverse

Name: yecS [H]

Synonym: NT01EI_3691

Alternate gene names: 238921539

Gene position: 3581912-3581241 (Counterclockwise)

Preceding gene: 238921540

Following gene: 238921533

Centisome position: 93.96

GC content: 43.6

Gene sequence:

>672_bases
ATGTTTAATCAATGGATGAGTTTTCAGTCGGATCTTATAGATCAATTCCCTTTGATTCTGGATGGGCTATGGCACACACT
GATGCTGGCCGGAGTTGTATCTATCACTGGGCTCTTGGGGGGGATGTTGTTACTGTATATGAAAATTAGTCGGCGAAAAT
GGTTGATTCGCAGTGTCGATGGTTACATTTCATTTTTTGTCGGTACTCCACTCATCGTACTATTATTTGTTGTCTACTAT
GGCTTGCCGAACTACGGTGTTCATTTATCGTCGTTTGCGGTGGCAGTACTAGGTTTTACCCTGAATGTATCAGCCTATAA
TGCATCTTATCTGTACTCAGCTTGGCTGGGACTGGATGAAGCAGAACTGCGGGCTGCTCGGGCGCAGGGTTTTACTGATT
TACAGGTCTATTGGCATATTGTTTTACCACAAGTCTTTAGTCGTTCAACACCATCCCTGACCAATCAGGTGATCGCTAAT
CTTAAAGATAGCTCTTATGCGTTTCTGATTGGCTTTATTGATTTTTTTTCACGGATTCAGGAGGTAGCATCCACAAATTT
TCAGTTCTTTCATGCCTATTTATTTGCAGCGCTGTCCTACATAGCCATGGTTTCGGTGATTGTGCTATCTGCTCGCCAGC
TAGAAAAGAGGGGTATACCGTCGAGAGGCTGA

Upstream 100 bases:

>100_bases
ACCTTTCTCGACAAAGGCATGGTACGGGCACAGGGTAGTATTCAGGCCTTGAAACAGCAGCAGCAGGAATCGATACGTGA
TTTCTTTGGGCGTTACGGTA

Downstream 100 bases:

>100_bases
CCAACACTACGGAAGTATCCATGATATAGGAGCTCGACGAAAGAAGCCTTGAAAACTTTTCATATTCGTCATTTTATAAG
TAAAAGCGTGTTGCTACTCT

Product: polar amino acid ABC transporter, inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MFNQWMSFQSDLIDQFPLILDGLWHTLMLAGVVSITGLLGGMLLLYMKISRRKWLIRSVDGYISFFVGTPLIVLLFVVYY
GLPNYGVHLSSFAVAVLGFTLNVSAYNASYLYSAWLGLDEAELRAARAQGFTDLQVYWHIVLPQVFSRSTPSLTNQVIAN
LKDSSYAFLIGFIDFFSRIQEVASTNFQFFHAYLFAALSYIAMVSVIVLSARQLEKRGIPSRG

Sequences:

>Translated_223_residues
MFNQWMSFQSDLIDQFPLILDGLWHTLMLAGVVSITGLLGGMLLLYMKISRRKWLIRSVDGYISFFVGTPLIVLLFVVYY
GLPNYGVHLSSFAVAVLGFTLNVSAYNASYLYSAWLGLDEAELRAARAQGFTDLQVYWHIVLPQVFSRSTPSLTNQVIAN
LKDSSYAFLIGFIDFFSRIQEVASTNFQFFHAYLFAALSYIAMVSVIVLSARQLEKRGIPSRG
>Mature_223_residues
MFNQWMSFQSDLIDQFPLILDGLWHTLMLAGVVSITGLLGGMLLLYMKISRRKWLIRSVDGYISFFVGTPLIVLLFVVYY
GLPNYGVHLSSFAVAVLGFTLNVSAYNASYLYSAWLGLDEAELRAARAQGFTDLQVYWHIVLPQVFSRSTPSLTNQVIAN
LKDSSYAFLIGFIDFFSRIQEVASTNFQFFHAYLFAALSYIAMVSVIVLSARQLEKRGIPSRG

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=199, Percent_Identity=37.1859296482412, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1788645, Length=200, Percent_Identity=30, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787030, Length=207, Percent_Identity=28.0193236714976, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787086, Length=223, Percent_Identity=27.3542600896861, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI87082239, Length=208, Percent_Identity=31.25, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1786873, Length=213, Percent_Identity=25.8215962441315, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 25129; Mature: 25129

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNQWMSFQSDLIDQFPLILDGLWHTLMLAGVVSITGLLGGMLLLYMKISRRKWLIRSVD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GYISFFVGTPLIVLLFVVYYGLPNYGVHLSSFAVAVLGFTLNVSAYNASYLYSAWLGLDE
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEECCCHHHHHHHHHCCCH
AELRAARAQGFTDLQVYWHIVLPQVFSRSTPSLTNQVIANLKDSSYAFLIGFIDFFSRIQ
HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
EVASTNFQFFHAYLFAALSYIAMVSVIVLSARQLEKRGIPSRG
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MFNQWMSFQSDLIDQFPLILDGLWHTLMLAGVVSITGLLGGMLLLYMKISRRKWLIRSVD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GYISFFVGTPLIVLLFVVYYGLPNYGVHLSSFAVAVLGFTLNVSAYNASYLYSAWLGLDE
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEECCCHHHHHHHHHCCCH
AELRAARAQGFTDLQVYWHIVLPQVFSRSTPSLTNQVIANLKDSSYAFLIGFIDFFSRIQ
HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
EVASTNFQFFHAYLFAALSYIAMVSVIVLSARQLEKRGIPSRG
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]