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The map label for this gene is ugpQ [H]

Identifier: 238921532

GI number: 238921532

Start: 3577673

End: 3578419

Strand: Reverse

Name: ugpQ [H]

Synonym: NT01EI_3684

Alternate gene names: 238921532

Gene position: 3578419-3577673 (Counterclockwise)

Preceding gene: 238921533

Following gene: 238921530

Centisome position: 93.86

GC content: 65.6

Gene sequence:

>747_bases
ATGAGTCACTGGCCTTATCCGGCCATCGTCGCCCACCGCGGCGGCGGCAAACTGGCGCCGGAGAATACCCTGGCAGCAAT
CGATGTGGGGGCCAGCCATGGCCATACCATGATTGAGTTCGATACGAAGCTGAGTGCCGACGGGCAGATCTTTTTACTGC
ATGACGATACGCTGGAACGAACCACCAATGGCTGGGGCGTGGCGGGGGAGCAGCCCTGGGAGCGGCTGGTGTGCCTGGAT
GCAGGGGGGGGATTCGGCCGTCGCTTTGCCGGTGAGCCGCTGCCGTTGCTGAGCCAGGTCGCCGAGCGCTGCCGGCAGCA
TGGCATGATGGCCAATATCGAGATCAAGCCTACCCACGGCTGCGATATTGAAACCGGGCGGGCGGTGGCGCTGGCCGCCG
CTGCTCTGTGGCAGGATACCGCGGTGCTGCCGCTGCTGTCCTCTTTCTCGCAACCGGCGCTGTCCGAGGCTCAGCGCGTT
GCGCCGCAGCTGCCGCGTGGGCTGTTGCTGGAGGCGTGGGACGACGAGTGGCAGGCGCTGACCCATGCGCTGGGCTGCGT
CGCGCTGCATATCGATCACCATGCCCTGAACGCCGAACGCGTGGCGGCGATCCGCCACGCCGGGCTGCATATCCTGGTGT
ATACGGTGAATCAGCCGCAGCGGGCGCGCGAGCTGCTCAACTGGGGCGTCGACAGCATCTGTACCGATCGCATCGACCTT
ATCGGCCCTGACTTCGCCAAACGCTGA

Upstream 100 bases:

>100_bases
TCGGCAGCGTATTGCAGCTGGTGCTGCCGCAGGATAACCTGCATTTCTTTGAACCTGGCGACGGGCGGCGTATCGTGCTG
CCCGCAGAGGAATCACCATC

Downstream 100 bases:

>100_bases
GGAGGACGGTGCCCAGTGGCGGCGACTACTGCGCGCGCGGTGAGTTCGGTGCTGGCGTTACGCCCTGCTGGCTTTGCCAC
AGCGGATCGTTGCGCTGCAT

Product: cytoplasmic glycerophosphodiester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MSHWPYPAIVAHRGGGKLAPENTLAAIDVGASHGHTMIEFDTKLSADGQIFLLHDDTLERTTNGWGVAGEQPWERLVCLD
AGGGFGRRFAGEPLPLLSQVAERCRQHGMMANIEIKPTHGCDIETGRAVALAAAALWQDTAVLPLLSSFSQPALSEAQRV
APQLPRGLLLEAWDDEWQALTHALGCVALHIDHHALNAERVAAIRHAGLHILVYTVNQPQRARELLNWGVDSICTDRIDL
IGPDFAKR

Sequences:

>Translated_248_residues
MSHWPYPAIVAHRGGGKLAPENTLAAIDVGASHGHTMIEFDTKLSADGQIFLLHDDTLERTTNGWGVAGEQPWERLVCLD
AGGGFGRRFAGEPLPLLSQVAERCRQHGMMANIEIKPTHGCDIETGRAVALAAAALWQDTAVLPLLSSFSQPALSEAQRV
APQLPRGLLLEAWDDEWQALTHALGCVALHIDHHALNAERVAAIRHAGLHILVYTVNQPQRARELLNWGVDSICTDRIDL
IGPDFAKR
>Mature_247_residues
SHWPYPAIVAHRGGGKLAPENTLAAIDVGASHGHTMIEFDTKLSADGQIFLLHDDTLERTTNGWGVAGEQPWERLVCLDA
GGGFGRRFAGEPLPLLSQVAERCRQHGMMANIEIKPTHGCDIETGRAVALAAAALWQDTAVLPLLSSFSQPALSEAQRVA
PQLPRGLLLEAWDDEWQALTHALGCVALHIDHHALNAERVAAIRHAGLHILVYTVNQPQRARELLNWGVDSICTDRIDLI
GPDFAKR

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to G3P and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycerophosphoryl diester phosphodiesterase family [H]

Homologues:

Organism=Homo sapiens, GI7706617, Length=139, Percent_Identity=31.6546762589928, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI284055245, Length=92, Percent_Identity=41.304347826087, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI284055240, Length=92, Percent_Identity=41.304347826087, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI284055242, Length=92, Percent_Identity=41.304347826087, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI21361649, Length=92, Percent_Identity=41.304347826087, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1789858, Length=245, Percent_Identity=68.1632653061224, Blast_Score=342, Evalue=1e-95,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 27009; Mature: 26878

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: PS00879 ODR_DC_2_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHWPYPAIVAHRGGGKLAPENTLAAIDVGASHGHTMIEFDTKLSADGQIFLLHDDTLER
CCCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCEEEEECCEECCCCEEEEEECCHHHH
TTNGWGVAGEQPWERLVCLDAGGGFGRRFAGEPLPLLSQVAERCRQHGMMANIEIKPTHG
CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCC
CDIETGRAVALAAAALWQDTAVLPLLSSFSQPALSEAQRVAPQLPRGLLLEAWDDEWQAL
CCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEECCCHHHHHH
THALGCVALHIDHHALNAERVAAIRHAGLHILVYTVNQPQRARELLNWGVDSICTDRIDL
HHHHHHEEEEECCHHCCHHHHHHHHHCCEEEEEEECCCCHHHHHHHHCCHHHHHHCCHHH
IGPDFAKR
CCCHHCCC
>Mature Secondary Structure 
SHWPYPAIVAHRGGGKLAPENTLAAIDVGASHGHTMIEFDTKLSADGQIFLLHDDTLER
CCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCEEEEECCEECCCCEEEEEECCHHHH
TTNGWGVAGEQPWERLVCLDAGGGFGRRFAGEPLPLLSQVAERCRQHGMMANIEIKPTHG
CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCC
CDIETGRAVALAAAALWQDTAVLPLLSSFSQPALSEAQRVAPQLPRGLLLEAWDDEWQAL
CCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEECCCHHHHHH
THALGCVALHIDHHALNAERVAAIRHAGLHILVYTVNQPQRARELLNWGVDSICTDRIDL
HHHHHHEEEEECCHHCCHHHHHHHHHCCEEEEEEECCCCHHHHHHHHCCHHHHHHCCHHH
IGPDFAKR
CCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2541415; 1851953; 8041620; 9278503; 3062310 [H]