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The map label for this gene is ulaR [H]

Identifier: 238921504

GI number: 238921504

Start: 3542131

End: 3542886

Strand: Reverse

Name: ulaR [H]

Synonym: NT01EI_3656

Alternate gene names: 238921504

Gene position: 3542886-3542131 (Counterclockwise)

Preceding gene: 238921505

Following gene: 238921503

Centisome position: 92.93

GC content: 60.71

Gene sequence:

>756_bases
ATGACGGAATCACAACGACATCAGACCCTGCTGGAGATGTTGCAGCAGGATGGCTTTGTCAGCGTTGAGCAGGTGATCGC
GAGCCTGCAGGTATCGCCGGCGACGGCGCGGCGCGATATCAATAAGCTGAATGACGCCGGTAAGCTGAAAAAGGTGCGCA
ACGGCGCGGAGGCCGCGAGCCCCAATCGCATGGCCTGGACGCCGATGAATATCCACCGGGCGCAGAATCACGATGAAAAG
GTGCGCATTGCCCGTGCCGCCTCGCGGCTGGTACAGCCGGGTGAGAGCGTAGTGATCAACTGCGGCTCGACGGCATTTTT
GCTGGGGCGGGAGCTCTGTGGACGCGATGTGCAGGTGATTACCAACTATTTGCCGTTGGCTAACTACTTGATAGATCAAG
AGCATGATAGCGTGGTGATCATGGGGGGACAGTATAATCGCACCCAGGCGATCACGCTGGCGCCGGCGGACGGCGATGCC
TCGCTGTATGCCGGACACTGGATGTTTACCAGCGGTAAGGGGCTGACCCCGGAGGGGTTGTACAAGACCGATATGTTGAC
GGCGATGGCAGAACAGAAGATGCTGAGGTACGCCGGTAAACTGGTGGCGCTGGTGGACAGCAGCAAGGTGGGGCAGCGGG
CCGGGATGCTGTTCGCGCGCACCGGGCAGATCGACATTCTGATCACCGGTCAGGATGCCTCGGCGGAGGTGGTTGCGCAC
CTGCGTGAGTGCGGCGTGCGGGTTGAGCTGGTCTGA

Upstream 100 bases:

>100_bases
CCGGGCGGTGGCGGTATCTGCGGCAGGGATACCGCCCGATTTGTTTCCCCGCAGCTTTCAAATATACTCATGTTGTAATC
ATAACTGAGCCTGGATTTTC

Downstream 100 bases:

>100_bases
TCGTGGTGTTCTACGGGGCCTGCTATTATAAAATTAATTGAATGCCAAGAGGTGACGTATGAGACCGCTCATTTATCTAT
CTCTTATGGGAGGAGTTTTT

Product: transcriptional repressor UlaR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MTESQRHQTLLEMLQQDGFVSVEQVIASLQVSPATARRDINKLNDAGKLKKVRNGAEAASPNRMAWTPMNIHRAQNHDEK
VRIARAASRLVQPGESVVINCGSTAFLLGRELCGRDVQVITNYLPLANYLIDQEHDSVVIMGGQYNRTQAITLAPADGDA
SLYAGHWMFTSGKGLTPEGLYKTDMLTAMAEQKMLRYAGKLVALVDSSKVGQRAGMLFARTGQIDILITGQDASAEVVAH
LRECGVRVELV

Sequences:

>Translated_251_residues
MTESQRHQTLLEMLQQDGFVSVEQVIASLQVSPATARRDINKLNDAGKLKKVRNGAEAASPNRMAWTPMNIHRAQNHDEK
VRIARAASRLVQPGESVVINCGSTAFLLGRELCGRDVQVITNYLPLANYLIDQEHDSVVIMGGQYNRTQAITLAPADGDA
SLYAGHWMFTSGKGLTPEGLYKTDMLTAMAEQKMLRYAGKLVALVDSSKVGQRAGMLFARTGQIDILITGQDASAEVVAH
LRECGVRVELV
>Mature_250_residues
TESQRHQTLLEMLQQDGFVSVEQVIASLQVSPATARRDINKLNDAGKLKKVRNGAEAASPNRMAWTPMNIHRAQNHDEKV
RIARAASRLVQPGESVVINCGSTAFLLGRELCGRDVQVITNYLPLANYLIDQEHDSVVIMGGQYNRTQAITLAPADGDAS
LYAGHWMFTSGKGLTPEGLYKTDMLTAMAEQKMLRYAGKLVALVDSSKVGQRAGMLFARTGQIDILITGQDASAEVVAHL
RECGVRVELV

Specific function: Represses ulaG and the ulaABCDEF operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790635, Length=248, Percent_Identity=74.5967741935484, Blast_Score=399, Evalue=1e-112,
Organism=Escherichia coli, GI1789829, Length=253, Percent_Identity=25.6916996047431, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI226510968, Length=240, Percent_Identity=27.9166666666667, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789519, Length=253, Percent_Identity=27.6679841897233, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789170, Length=226, Percent_Identity=27.8761061946903, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI87082344, Length=253, Percent_Identity=23.7154150197628, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787540, Length=251, Percent_Identity=27.0916334661355, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789059, Length=260, Percent_Identity=26.1538461538462, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788069, Length=255, Percent_Identity=27.843137254902, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27420; Mature: 27289

Theoretical pI: Translated: 8.09; Mature: 8.09

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTESQRHQTLLEMLQQDGFVSVEQVIASLQVSPATARRDINKLNDAGKLKKVRNGAEAAS
CCCCHHHHHHHHHHHHCCCEEHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCC
PNRMAWTPMNIHRAQNHDEKVRIARAASRLVQPGESVVINCGSTAFLLGRELCGRDVQVI
CCCEEECCCHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCHHHHH
TNYLPLANYLIDQEHDSVVIMGGQYNRTQAITLAPADGDASLYAGHWMFTSGKGLTPEGL
HHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCCCCC
YKTDMLTAMAEQKMLRYAGKLVALVDSSKVGQRAGMLFARTGQIDILITGQDASAEVVAH
HHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHCEEEEECCCEEEEEECCCCHHHHHHH
LRECGVRVELV
HHHCCCEEEEC
>Mature Secondary Structure 
TESQRHQTLLEMLQQDGFVSVEQVIASLQVSPATARRDINKLNDAGKLKKVRNGAEAAS
CCCHHHHHHHHHHHHCCCEEHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCC
PNRMAWTPMNIHRAQNHDEKVRIARAASRLVQPGESVVINCGSTAFLLGRELCGRDVQVI
CCCEEECCCHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCHHHHH
TNYLPLANYLIDQEHDSVVIMGGQYNRTQAITLAPADGDASLYAGHWMFTSGKGLTPEGL
HHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCCCCC
YKTDMLTAMAEQKMLRYAGKLVALVDSSKVGQRAGMLFARTGQIDILITGQDASAEVVAH
HHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHCEEEEECCCEEEEEECCCCHHHHHHH
LRECGVRVELV
HHHCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA