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The map label for this gene is rbsC [H]

Identifier: 238921280

GI number: 238921280

Start: 3308825

End: 3309790

Strand: Reverse

Name: rbsC [H]

Synonym: NT01EI_3423

Alternate gene names: 238921280

Gene position: 3309790-3308825 (Counterclockwise)

Preceding gene: 238921281

Following gene: 238921279

Centisome position: 86.82

GC content: 62.01

Gene sequence:

>966_bases
ATGAAACTGTTTTTTACCCGTCACCGGGCGCCGCTGCTGACCGGATTTATCCTGCTGCTGCTGTGGAGCCTGTTTGCCGC
CATCAGCCCGGTGACCTTTCTGCACGTGCGGATTTATACCTCGCTGCTCTCCACCATTCCGCTGACGGTGCTGCTGGCGC
TGGGGATGACACTGCTTATCATCGCCCGCGAGATAGATCTGAGTTTTCCCTCGGTGGTGGCGCTGGGGGGCTTTGTCTTC
GCCTGGCTGTATCAGCATACCGGCTCCGCCCTGTTGGCGCTGGGTGGCGCCGTGGTCAGCGGCATGCTGTGCGGGTTGCT
GAACGCCCTGCTGGTGGTACGCCTCAATATTCCGTCGATTATCGCCACCATCGGCACCCAGTTCTTTCTGGGCGGTCTGT
CGACGGTGTTGGCCAACGGACTGGCGATCAGCCTGCCGACGCTGCGCGACGATGGGCTGTCAACCCTGCTGGTGGGACGA
CTGGGTGACTGGCTGCCGACGCAGAGCCTGTGGGGACTCCTGATTACGCTGGTGATGTGGTTGTATCTGGCACGTCACCG
CTTTGGCGATCAGATCAACTTTATCGGCGATAACCCTGAGTCGGCGCGTCTGATGGGGGTGCCGGTCAGCGCGACCCGCT
TCTGGCTGTTTATGGTGATGGGCATTCTCTCCGCGCTGGTCGGAGTGTTGCTCAGCGTCGAGATGAGCAGCTGGTGGCCC
AATCAGGGGCAGGGCTATATGCTGCTGGTGTTTGCCTCGGTGTTTATCGGCGGCACCTCGGTGCTGGGCGGGCGCGGTTC
GCTGATGGGCAGCCTGTTCGGCGCCTGCATTATTGGTATGCTGGAGGCGGGGATCATCAGCGCCGGTCTGGATGGCTTCT
GGACCCGTCTGGTGTACGGCGTGATTATTCTGGCGGCGCTGGTGGTGCATGGCTCTCTGCTGCAGCGCCGCCCGCGACGG
CGTTAA

Upstream 100 bases:

>100_bases
GTGATGGATCGCGGCGCCATCGTCACCGCCTACCGTAAGGATCAGCTGACGCTGGCCAGCCTGCAGCAGGCGTTGTTGGA
TGCCGTGAGGTCATGAGTCG

Downstream 100 bases:

>100_bases
GGCTGCGCCGTCGGCGCAGCGTATTGATTAAGGCAATGTAATGAGCAAGATCACCCTGATCGGCGCGGGCAGTATTATGT
TTTCGCGTCAGATCATTTCC

Product: monosaccharide-transporting ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MKLFFTRHRAPLLTGFILLLLWSLFAAISPVTFLHVRIYTSLLSTIPLTVLLALGMTLLIIAREIDLSFPSVVALGGFVF
AWLYQHTGSALLALGGAVVSGMLCGLLNALLVVRLNIPSIIATIGTQFFLGGLSTVLANGLAISLPTLRDDGLSTLLVGR
LGDWLPTQSLWGLLITLVMWLYLARHRFGDQINFIGDNPESARLMGVPVSATRFWLFMVMGILSALVGVLLSVEMSSWWP
NQGQGYMLLVFASVFIGGTSVLGGRGSLMGSLFGACIIGMLEAGIISAGLDGFWTRLVYGVIILAALVVHGSLLQRRPRR
R

Sequences:

>Translated_321_residues
MKLFFTRHRAPLLTGFILLLLWSLFAAISPVTFLHVRIYTSLLSTIPLTVLLALGMTLLIIAREIDLSFPSVVALGGFVF
AWLYQHTGSALLALGGAVVSGMLCGLLNALLVVRLNIPSIIATIGTQFFLGGLSTVLANGLAISLPTLRDDGLSTLLVGR
LGDWLPTQSLWGLLITLVMWLYLARHRFGDQINFIGDNPESARLMGVPVSATRFWLFMVMGILSALVGVLLSVEMSSWWP
NQGQGYMLLVFASVFIGGTSVLGGRGSLMGSLFGACIIGMLEAGIISAGLDGFWTRLVYGVIILAALVVHGSLLQRRPRR
R
>Mature_321_residues
MKLFFTRHRAPLLTGFILLLLWSLFAAISPVTFLHVRIYTSLLSTIPLTVLLALGMTLLIIAREIDLSFPSVVALGGFVF
AWLYQHTGSALLALGGAVVSGMLCGLLNALLVVRLNIPSIIATIGTQFFLGGLSTVLANGLAISLPTLRDDGLSTLLVGR
LGDWLPTQSLWGLLITLVMWLYLARHRFGDQINFIGDNPESARLMGVPVSATRFWLFMVMGILSALVGVLLSVEMSSWWP
NQGQGYMLLVFASVFIGGTSVLGGRGSLMGSLFGACIIGMLEAGIISAGLDGFWTRLVYGVIILAALVVHGSLLQRRPRR
R

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=328, Percent_Identity=28.6585365853659, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI87082395, Length=308, Percent_Identity=32.7922077922078, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1790191, Length=298, Percent_Identity=31.5436241610738, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI145693152, Length=277, Percent_Identity=30.6859205776173, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790524, Length=295, Percent_Identity=29.1525423728814, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787793, Length=295, Percent_Identity=30.8474576271186, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787794, Length=279, Percent_Identity=26.8817204301075, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1789992, Length=132, Percent_Identity=35.6060606060606, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788471, Length=284, Percent_Identity=28.169014084507, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34642; Mature: 34642

Theoretical pI: Translated: 10.80; Mature: 10.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLFFTRHRAPLLTGFILLLLWSLFAAISPVTFLHVRIYTSLLSTIPLTVLLALGMTLLI
CCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAREIDLSFPSVVALGGFVFAWLYQHTGSALLALGGAVVSGMLCGLLNALLVVRLNIPSI
HHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
IATIGTQFFLGGLSTVLANGLAISLPTLRDDGLSTLLVGRLGDWLPTQSLWGLLITLVMW
HHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LYLARHRFGDQINFIGDNPESARLMGVPVSATRFWLFMVMGILSALVGVLLSVEMSSWWP
HHHHHHHCCCCEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NQGQGYMLLVFASVFIGGTSVLGGRGSLMGSLFGACIIGMLEAGIISAGLDGFWTRLVYG
CCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
VIILAALVVHGSLLQRRPRRR
HHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKLFFTRHRAPLLTGFILLLLWSLFAAISPVTFLHVRIYTSLLSTIPLTVLLALGMTLLI
CCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAREIDLSFPSVVALGGFVFAWLYQHTGSALLALGGAVVSGMLCGLLNALLVVRLNIPSI
HHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
IATIGTQFFLGGLSTVLANGLAISLPTLRDDGLSTLLVGRLGDWLPTQSLWGLLITLVMW
HHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LYLARHRFGDQINFIGDNPESARLMGVPVSATRFWLFMVMGILSALVGVLLSVEMSSWWP
HHHHHHHCCCCEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NQGQGYMLLVFASVFIGGTSVLGGRGSLMGSLFGACIIGMLEAGIISAGLDGFWTRLVYG
CCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
VIILAALVVHGSLLQRRPRRR
HHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]