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The map label for this gene is visC [H]

Identifier: 238921212

GI number: 238921212

Start: 3240979

End: 3242190

Strand: Reverse

Name: visC [H]

Synonym: NT01EI_3354

Alternate gene names: 238921212

Gene position: 3242190-3240979 (Counterclockwise)

Preceding gene: 238921213

Following gene: 238921211

Centisome position: 85.05

GC content: 64.85

Gene sequence:

>1212_bases
ATGCAATCATTCGATATTATTGTTGCCGGTGGCGGTATGGTCGGTCTGGCGCTGGCTAACGCCCTTTCCGGCAGCGGGTT
GCGCATTGCCGTGCTGGAGCAGCGCTCACCGACGCAGGCGCCGGAGGGTGTGCTGCGGGTGTCTGCGCTGAATATTGCCA
GTGAACGTCTGTTACAGCAGCTTGGTGTCTGGCCTCAGGTCCTGGCGCAGGGCGCTGCGCCCTGTCGCGGCATGGCGGTA
TGGGAGGCGGACAGCTTTGGCCGCATTGCCTTTGATGCTGCGGACTATGGGCATCTCCACCTGGGCCACATCGTGGAAAA
CCAGACGGTACAGATGGCGCTGTGGCAGCGGGCCGGGCAGGATAAAGGGATCACCCTGATGACGCCGGCGGCCATTGCGC
AGGTGGCCTGGGGAGAGAATGAGGCGTTTGTGACGTTGGATAACGGGACGATGCTCAGTGCCCGGCTGTTGGTCGGCGCC
GATGGTGCCCACTCGGCCCTGCGCCGTCAGGCCGACGTGCCGCTGACGTTCTGGGACTACCAGCATCACGCGCTGGTGGC
GACGATCCGCTGTGAGCAGCCCCATGACCATATCGCGCGTCAGATCTTTCGCCCGCAGGGGATCCTGGCTTTTTTACCGC
TGCAGGATCCCAGACTGTGCTCTATCGTCTGGTCGCTGCCGCCGCAAGAGGCGCAGCGCATGTCCGAGGCCGCGCCGCCG
CTTTTTGAGCGAGCGCTGACCATCGCGTTCGATCATCGGCTTGGCCGCTGCCAGTGCGTCGGTGAGCGGGCGCTGTTTCC
CTTGCAGGGACGTTATGCCCGCAGCTTTGCCGGACATCGCTTGGCCCTGATGGGGGATGCGGCACACACCGTACATCCGC
TGGCCGGCCAGGGGGTTAATCTGGGGCTGATGGATGCTGCAGAGCTGGCGGGGGAGCTGCGTCGCCTGCAGACCCAGGGC
AAGGACATCGGACATCATCTGTATCTGCGCCGCTACGAGCGTCGGCGCAAGCTCAGCGCCGCCGTGATGCTGGCGGCGAT
GCAGGGGTTCCGCGATCTGTTTGCCGGTACCAACCCGGCGAAGAAGCTGCTGCGTGACCTGGGGCTGACGCTGGCCGATC
GCCTGCCGGGGGTGAAGCCCCAGTTGGTACGCCACGCCATGGGCTTGACGGATCTACCTGTGCTGCTGCGGGCGGCACAG
CCGGACGAATAA

Upstream 100 bases:

>100_bases
ATGGCGCTGGCGCTGACACCGTCGCTGCACACGCCGCTGGTGCGGCGCCTGCTGGGTCAGGTTGCCCGCTAGACGGCCGT
TTCTGGGGAAACAGGAAGCT

Downstream 100 bases:

>100_bases
ATGCTGGACGGCTCACCCGCGGATGTTCTCTGCGGGTGAAATATTCTAATCCTACCCCCACAGTTTGAATTAGTTTTTCT
TATCCCTCCGTTTTTTATCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MQSFDIIVAGGGMVGLALANALSGSGLRIAVLEQRSPTQAPEGVLRVSALNIASERLLQQLGVWPQVLAQGAAPCRGMAV
WEADSFGRIAFDAADYGHLHLGHIVENQTVQMALWQRAGQDKGITLMTPAAIAQVAWGENEAFVTLDNGTMLSARLLVGA
DGAHSALRRQADVPLTFWDYQHHALVATIRCEQPHDHIARQIFRPQGILAFLPLQDPRLCSIVWSLPPQEAQRMSEAAPP
LFERALTIAFDHRLGRCQCVGERALFPLQGRYARSFAGHRLALMGDAAHTVHPLAGQGVNLGLMDAAELAGELRRLQTQG
KDIGHHLYLRRYERRRKLSAAVMLAAMQGFRDLFAGTNPAKKLLRDLGLTLADRLPGVKPQLVRHAMGLTDLPVLLRAAQ
PDE

Sequences:

>Translated_403_residues
MQSFDIIVAGGGMVGLALANALSGSGLRIAVLEQRSPTQAPEGVLRVSALNIASERLLQQLGVWPQVLAQGAAPCRGMAV
WEADSFGRIAFDAADYGHLHLGHIVENQTVQMALWQRAGQDKGITLMTPAAIAQVAWGENEAFVTLDNGTMLSARLLVGA
DGAHSALRRQADVPLTFWDYQHHALVATIRCEQPHDHIARQIFRPQGILAFLPLQDPRLCSIVWSLPPQEAQRMSEAAPP
LFERALTIAFDHRLGRCQCVGERALFPLQGRYARSFAGHRLALMGDAAHTVHPLAGQGVNLGLMDAAELAGELRRLQTQG
KDIGHHLYLRRYERRRKLSAAVMLAAMQGFRDLFAGTNPAKKLLRDLGLTLADRLPGVKPQLVRHAMGLTDLPVLLRAAQ
PDE
>Mature_403_residues
MQSFDIIVAGGGMVGLALANALSGSGLRIAVLEQRSPTQAPEGVLRVSALNIASERLLQQLGVWPQVLAQGAAPCRGMAV
WEADSFGRIAFDAADYGHLHLGHIVENQTVQMALWQRAGQDKGITLMTPAAIAQVAWGENEAFVTLDNGTMLSARLLVGA
DGAHSALRRQADVPLTFWDYQHHALVATIRCEQPHDHIARQIFRPQGILAFLPLQDPRLCSIVWSLPPQEAQRMSEAAPP
LFERALTIAFDHRLGRCQCVGERALFPLQGRYARSFAGHRLALMGDAAHTVHPLAGQGVNLGLMDAAELAGELRRLQTQG
KDIGHHLYLRRYERRRKLSAAVMLAAMQGFRDLFAGTNPAKKLLRDLGLTLADRLPGVKPQLVRHAMGLTDLPVLLRAAQ
PDE

Specific function: Not yet known [H]

COG id: COG0654

COG function: function code HC; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiH/COQ6 family [H]

Homologues:

Organism=Homo sapiens, GI32967305, Length=401, Percent_Identity=31.1720698254364, Blast_Score=154, Evalue=1e-37,
Organism=Homo sapiens, GI32967307, Length=371, Percent_Identity=30.9973045822102, Blast_Score=140, Evalue=3e-33,
Organism=Escherichia coli, GI1789273, Length=402, Percent_Identity=66.9154228855721, Blast_Score=549, Evalue=1e-157,
Organism=Escherichia coli, GI1786883, Length=393, Percent_Identity=34.6055979643766, Blast_Score=209, Evalue=3e-55,
Organism=Escherichia coli, GI1789274, Length=390, Percent_Identity=33.0769230769231, Blast_Score=175, Evalue=4e-45,
Organism=Caenorhabditis elegans, GI25146631, Length=432, Percent_Identity=29.6296296296296, Blast_Score=156, Evalue=2e-38,
Organism=Saccharomyces cerevisiae, GI6321694, Length=338, Percent_Identity=26.9230769230769, Blast_Score=110, Evalue=3e-25,
Organism=Drosophila melanogaster, GI19920760, Length=434, Percent_Identity=31.3364055299539, Blast_Score=166, Evalue=2e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002938
- InterPro:   IPR003042
- InterPro:   IPR018168
- InterPro:   IPR010971 [H]

Pfam domain/function: PF01494 FAD_binding_3 [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 43939; Mature: 43939

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: PS01304 UBIH

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSFDIIVAGGGMVGLALANALSGSGLRIAVLEQRSPTQAPEGVLRVSALNIASERLLQQ
CCCEEEEEECCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHH
LGVWPQVLAQGAAPCRGMAVWEADSFGRIAFDAADYGHLHLGHIVENQTVQMALWQRAGQ
HCCCHHHHHCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEHHHHCCCHHHHHHHHHCCC
DKGITLMTPAAIAQVAWGENEAFVTLDNGTMLSARLLVGADGAHSALRRQADVPLTFWDY
CCCEEEECHHHHHHHEECCCCEEEEECCCCEEEEEEEEECCCHHHHHHHHCCCCEEEECC
QHHALVATIRCEQPHDHIARQIFRPQGILAFLPLQDPRLCSIVWSLPPQEAQRMSEAAPP
CCCEEEEEEECCCCHHHHHHHHHCCCCCEEEECCCCCCEEEEEECCCHHHHHHHHHCCCH
LFERALTIAFDHRLGRCQCVGERALFPLQGRYARSFAGHRLALMGDAAHTVHPLAGQGVN
HHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHCCCEEEEECCCHHHCCCCCCCCCC
LGLMDAAELAGELRRLQTQGKDIGHHLYLRRYERRRKLSAAVMLAAMQGFRDLFAGTNPA
EECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
KKLLRDLGLTLADRLPGVKPQLVRHAMGLTDLPVLLRAAQPDE
HHHHHHHCCHHHHHCCCCCHHHHHHHCCCCCHHHHHHCCCCCC
>Mature Secondary Structure
MQSFDIIVAGGGMVGLALANALSGSGLRIAVLEQRSPTQAPEGVLRVSALNIASERLLQQ
CCCEEEEEECCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHH
LGVWPQVLAQGAAPCRGMAVWEADSFGRIAFDAADYGHLHLGHIVENQTVQMALWQRAGQ
HCCCHHHHHCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEHHHHCCCHHHHHHHHHCCC
DKGITLMTPAAIAQVAWGENEAFVTLDNGTMLSARLLVGADGAHSALRRQADVPLTFWDY
CCCEEEECHHHHHHHEECCCCEEEEECCCCEEEEEEEEECCCHHHHHHHHCCCCEEEECC
QHHALVATIRCEQPHDHIARQIFRPQGILAFLPLQDPRLCSIVWSLPPQEAQRMSEAAPP
CCCEEEEEEECCCCHHHHHHHHHCCCCCEEEECCCCCCEEEEEECCCHHHHHHHHHCCCH
LFERALTIAFDHRLGRCQCVGERALFPLQGRYARSFAGHRLALMGDAAHTVHPLAGQGVN
HHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHCCCEEEEECCCHHHCCCCCCCCCC
LGLMDAAELAGELRRLQTQGKDIGHHLYLRRYERRRKLSAAVMLAAMQGFRDLFAGTNPA
EECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
KKLLRDLGLTLADRLPGVKPQLVRHAMGLTDLPVLLRAAQPDE
HHHHHHHCCHHHHHCCCCCHHHHHHHCCCCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on paired donors, with incorporation or reduction of molecular oxygen; With NADH2 or NADPH2 as one donor, and incorporation of one atom of oxygen [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1339425; 9278503 [H]