Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
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Accession | NC_012779 |
Length | 3,812,315 |
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The map label for this gene is 238921184
Identifier: 238921184
GI number: 238921184
Start: 3204784
End: 3206685
Strand: Reverse
Name: 238921184
Synonym: NT01EI_3325
Alternate gene names: NA
Gene position: 3206685-3204784 (Counterclockwise)
Preceding gene: 238921185
Following gene: 238921183
Centisome position: 84.11
GC content: 56.31
Gene sequence:
>1902_bases ATGCACAGCGACTATGCCTCGGTGGAGAGCCAGAGCGGCATCTTTGCCGGTACCGGTGGCTTTGATATCACCGTGGGTAA TCATACCCAGCTGGACGGCGCGGCCATTGCCAGCGCGGCCGGTCAGGAGAGCAACCGCTTAGATAGCGGAACCCTGGGCT TTGCCGATATCGACAACCGCGCTGAGTTCAGGGCGCAGCACCAGGGGTTTGGCCTTAGCTCCGGCGGCAGCATTGGCGGC CAGTTCGCGGGCAATATGGCCAATAGCCTGTTGGCGGGCGCCAATCATCAGGAGCGCGCCCGCGGCACCACCCAGTCGGC TATCGCCGACGGCGCGATCGTCGTGCGCGATCGGGCCAACCAGCAGCAGGATGTCGCCGGGTTAGCGCGCGACACGGAGC GGGCGCACCAGCCCCTCACCCCTATCTTCGACAAGGAGAAAGCGCAGCGGCGCCTGCAGCAGGCCCGGCTGATCGGTGAG ATTGGCAATCAGGTGGCCGATATTGCACGGACAGAGGGCGAGATCGCCGGGGAAAAAGCCCGGCGTGACCCGACGGCCCT GAATCAGGCGCGTACCGCACTGGAAGCCAGCGGTAAACCGTTTACCGAGAAGGATGTAGCGCAGCGGGCGTATAACACCG GCATGCGCGATTCCGGGTTTGGCACCGGAGGGCAATACCAGCAGGCGATTCAGGCGGCCACGGCGGCGGTACAGGGGCTG GCGGGCGGCAACCTGCAGGCGGCGCTGGCGGGCGGCGCGGCGCCGTATATTAGTGAGATAATCAAGCAGAGCACCCCGGA CGGCGCGGGGCGTGTGGCGGCCCATGCGGTGGTAAATGCGGCGCTTGCCGCAGCACAGGGGAATAACGCCCTTGCCGGAG CCGCGGGTGCGGCCACCGGCGAAATCGTCGGCATGCTGGCCACGGAGATATACCAGAAACCGGTCGCTGAGCTCAGCGAA AGCGAGAAACAGACCGCTTCAACACTGGCCACCGTTGCCGCCGGACTGGCCAGTGGTCTGGTGGGCGACGCGGGGGCTTC CGCGCTCGCCGGGGCAGAGTCGGGTAAGACGACGGTGGAGAATAATTTCCTTGGGACAAAATCGTCCAGCAAGCTAGATA AAATTATCGAAAAAATACAGCATGGTGATAAGACGTTAGCGACGGCGAAAGAGTTACTTCAATTAGAAAACGCAGACAAA CGGAGTGACATACTTATCACGAAGTTTGTGTCAGATCCTACCCAACTGAATAGCGCTGAACGAAGCGAATTAGCTGGTTA TTTGCGTATTTACGCAGCAGAGATGGAGACGGAATATGGTACAGGTGTTGCTCAGGAGCTAGTCAATGGATTGCTTTCAG GGAGCGACTATCTAAAACGAGGCCCAGACTCTGATGTAATGGCTGAGGCGCAAAATATAATGAGGGCATGGGTATATCAT AAATCCAATGCGAGTATTGGTGATGCACCGCTGCTGTTTTCTGGCAGTATGCTGGGTATTACAATAAAAGGAGGTATGGC TGTTAATGCGGCGATAGGCATAGGTGTCAACACTGTGGTTCAATTAAGTGGAGACGATCCTTTCAGTTATGTGGATGCAA GTATTGCGGGATTGATATCAGCCGCGACGACAGGAAAAGGTTGGCAGGCTTCCGCAGCCATTAATATGGGTGGGGCCGCC GTTAGCAGTGCACTTAAAGGAGAGGATCCAACTAATGCAGTGATCGGAGCTGGAATTGGTAGTGTGGGTGGTAGTATAGG AGGGAAAACTGTTGACTCATTATCTACAATAACAAATCAAGCAGTAAAGGATGTTATTGGTACAGTTACTGGTTCTACAC TTAATGAAGTCACAGGAAAGATAGTGAAAGATGAATTAGATGGAACTAATAACAATGAATAG
Upstream 100 bases:
>100_bases AGCAGCAGCAACAACCAACCTGATAGATGCAGGAGCTAGCGCCGGGGGGAGCATCGGCTTCGGCAATGGCTCTCTGGGTA TCGCCGCCAGCCGCGATAAG
Downstream 100 bases:
>100_bases GTTTAAAAAAGTGGGTGTTGCTTGGTTTCTTTTTCTGATTTTTTATTGTTCGTTTTTGATTTCTTTTATACTGCTTTTAT ATATATTTGGGATATCAATT
Product: hypothetical protein
Products: NA
Alternate protein names: Filamentous Hemagglutinin; Filamentous Haemagglutinin Outer Membrane Protein; Hemagglutinin-Related Protein; Adhesin/Hemagglutinin; ShlA/HecA/FhaA Exofamily Protein; Adhesin; Hemolysin; Filamentous Haemagglutinin; Adhesin/Hemolysin; Cell Surface Protein; Large Exoprotein Involved In Heme Utilization Or Adhesion; Adhesin HecA Family; Adhesin/Hemagglutinin/Hemolysin; Hemolysin/Hemagglutinin-Like Protein; Contact-Dependent Inhibitor A; Adhesin/Haemagluttinin; Filamentous Haemagglutinin Family Protein; Contact-Dependent Inhibition Of Growth Factor CdiA; Exoprotein Adhesin Or Hemolysin; Filamentous Haemagglutinin Adhesin HecA; Member Of ShlA/HecA/FhaA Exoprotein Family; Haemolysin-Like Protein; Hemolysin/Hemagglutinin-Like Protein HecA; Haemolysin/Haemagglutinin; AT-2 Family Transporter; Cell Surface Haemagluttinin Protein; Hemagglutinin/Hemolysin-Related Protein; Filamentous Hemagglutinin / Adhesin; Hemagglutinin/Adhesin Repeat-Containing Protein; Hemagglutinin/Hemolysin Family Protein; Fimbrial Adhesin
Number of amino acids: Translated: 633; Mature: 633
Protein sequence:
>633_residues MHSDYASVESQSGIFAGTGGFDITVGNHTQLDGAAIASAAGQESNRLDSGTLGFADIDNRAEFRAQHQGFGLSSGGSIGG QFAGNMANSLLAGANHQERARGTTQSAIADGAIVVRDRANQQQDVAGLARDTERAHQPLTPIFDKEKAQRRLQQARLIGE IGNQVADIARTEGEIAGEKARRDPTALNQARTALEASGKPFTEKDVAQRAYNTGMRDSGFGTGGQYQQAIQAATAAVQGL AGGNLQAALAGGAAPYISEIIKQSTPDGAGRVAAHAVVNAALAAAQGNNALAGAAGAATGEIVGMLATEIYQKPVAELSE SEKQTASTLATVAAGLASGLVGDAGASALAGAESGKTTVENNFLGTKSSSKLDKIIEKIQHGDKTLATAKELLQLENADK RSDILITKFVSDPTQLNSAERSELAGYLRIYAAEMETEYGTGVAQELVNGLLSGSDYLKRGPDSDVMAEAQNIMRAWVYH KSNASIGDAPLLFSGSMLGITIKGGMAVNAAIGIGVNTVVQLSGDDPFSYVDASIAGLISAATTGKGWQASAAINMGGAA VSSALKGEDPTNAVIGAGIGSVGGSIGGKTVDSLSTITNQAVKDVIGTVTGSTLNEVTGKIVKDELDGTNNNE
Sequences:
>Translated_633_residues MHSDYASVESQSGIFAGTGGFDITVGNHTQLDGAAIASAAGQESNRLDSGTLGFADIDNRAEFRAQHQGFGLSSGGSIGG QFAGNMANSLLAGANHQERARGTTQSAIADGAIVVRDRANQQQDVAGLARDTERAHQPLTPIFDKEKAQRRLQQARLIGE IGNQVADIARTEGEIAGEKARRDPTALNQARTALEASGKPFTEKDVAQRAYNTGMRDSGFGTGGQYQQAIQAATAAVQGL AGGNLQAALAGGAAPYISEIIKQSTPDGAGRVAAHAVVNAALAAAQGNNALAGAAGAATGEIVGMLATEIYQKPVAELSE SEKQTASTLATVAAGLASGLVGDAGASALAGAESGKTTVENNFLGTKSSSKLDKIIEKIQHGDKTLATAKELLQLENADK RSDILITKFVSDPTQLNSAERSELAGYLRIYAAEMETEYGTGVAQELVNGLLSGSDYLKRGPDSDVMAEAQNIMRAWVYH KSNASIGDAPLLFSGSMLGITIKGGMAVNAAIGIGVNTVVQLSGDDPFSYVDASIAGLISAATTGKGWQASAAINMGGAA VSSALKGEDPTNAVIGAGIGSVGGSIGGKTVDSLSTITNQAVKDVIGTVTGSTLNEVTGKIVKDELDGTNNNE >Mature_633_residues MHSDYASVESQSGIFAGTGGFDITVGNHTQLDGAAIASAAGQESNRLDSGTLGFADIDNRAEFRAQHQGFGLSSGGSIGG QFAGNMANSLLAGANHQERARGTTQSAIADGAIVVRDRANQQQDVAGLARDTERAHQPLTPIFDKEKAQRRLQQARLIGE IGNQVADIARTEGEIAGEKARRDPTALNQARTALEASGKPFTEKDVAQRAYNTGMRDSGFGTGGQYQQAIQAATAAVQGL AGGNLQAALAGGAAPYISEIIKQSTPDGAGRVAAHAVVNAALAAAQGNNALAGAAGAATGEIVGMLATEIYQKPVAELSE SEKQTASTLATVAAGLASGLVGDAGASALAGAESGKTTVENNFLGTKSSSKLDKIIEKIQHGDKTLATAKELLQLENADK RSDILITKFVSDPTQLNSAERSELAGYLRIYAAEMETEYGTGVAQELVNGLLSGSDYLKRGPDSDVMAEAQNIMRAWVYH KSNASIGDAPLLFSGSMLGITIKGGMAVNAAIGIGVNTVVQLSGDDPFSYVDASIAGLISAATTGKGWQASAAINMGGAA VSSALKGEDPTNAVIGAGIGSVGGSIGGKTVDSLSTITNQAVKDVIGTVTGSTLNEVTGKIVKDELDGTNNNE
Specific function: Unknown
COG id: COG3210
COG function: function code U; Large exoproteins involved in heme utilization or adhesion
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64509; Mature: 64509
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHSDYASVESQSGIFAGTGGFDITVGNHTQLDGAAIASAAGQESNRLDSGTLGFADIDNR CCCCHHCCCCCCCEEEECCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCH AEFRAQHQGFGLSSGGSIGGQFAGNMANSLLAGANHQERARGTTQSAIADGAIVVRDRAN HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCEEEEECCCC QQQDVAGLARDTERAHQPLTPIFDKEKAQRRLQQARLIGEIGNQVADIARTEGEIAGEKA CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHH RRDPTALNQARTALEASGKPFTEKDVAQRAYNTGMRDSGFGTGGQYQQAIQAATAAVQGL CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHC AGGNLQAALAGGAAPYISEIIKQSTPDGAGRVAAHAVVNAALAAAQGNNALAGAAGAATG CCCCEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH EIVGMLATEIYQKPVAELSESEKQTASTLATVAAGLASGLVGDAGASALAGAESGKTTVE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCC NNFLGTKSSSKLDKIIEKIQHGDKTLATAKELLQLENADKRSDILITKFVSDPTQLNSAE CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHCCCHH RSELAGYLRIYAAEMETEYGTGVAQELVNGLLSGSDYLKRGPDSDVMAEAQNIMRAWVYH HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHC KSNASIGDAPLLFSGSMLGITIKGGMAVNAAIGIGVNTVVQLSGDDPFSYVDASIAGLIS CCCCCCCCCCEEEECCEEEEEEECCEEEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHH AATTGKGWQASAAINMGGAAVSSALKGEDPTNAVIGAGIGSVGGSIGGKTVDSLSTITNQ HHCCCCCCEEEEEEECCHHHHHHHHCCCCCCCCEEECCHHHCCCCCCCHHHHHHHHHHHH AVKDVIGTVTGSTLNEVTGKIVKDELDGTNNNE HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MHSDYASVESQSGIFAGTGGFDITVGNHTQLDGAAIASAAGQESNRLDSGTLGFADIDNR CCCCHHCCCCCCCEEEECCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCH AEFRAQHQGFGLSSGGSIGGQFAGNMANSLLAGANHQERARGTTQSAIADGAIVVRDRAN HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCEEEEECCCC QQQDVAGLARDTERAHQPLTPIFDKEKAQRRLQQARLIGEIGNQVADIARTEGEIAGEKA CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHH RRDPTALNQARTALEASGKPFTEKDVAQRAYNTGMRDSGFGTGGQYQQAIQAATAAVQGL CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHC AGGNLQAALAGGAAPYISEIIKQSTPDGAGRVAAHAVVNAALAAAQGNNALAGAAGAATG CCCCEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH EIVGMLATEIYQKPVAELSESEKQTASTLATVAAGLASGLVGDAGASALAGAESGKTTVE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCC NNFLGTKSSSKLDKIIEKIQHGDKTLATAKELLQLENADKRSDILITKFVSDPTQLNSAE CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHCCCHH RSELAGYLRIYAAEMETEYGTGVAQELVNGLLSGSDYLKRGPDSDVMAEAQNIMRAWVYH HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHC KSNASIGDAPLLFSGSMLGITIKGGMAVNAAIGIGVNTVVQLSGDDPFSYVDASIAGLIS CCCCCCCCCCEEEECCEEEEEEECCEEEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHH AATTGKGWQASAAINMGGAAVSSALKGEDPTNAVIGAGIGSVGGSIGGKTVDSLSTITNQ HHCCCCCCEEEEEEECCHHHHHHHHCCCCCCCCEEECCHHHCCCCCCCHHHHHHHHHHHH AVKDVIGTVTGSTLNEVTGKIVKDELDGTNNNE HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA