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The map label for this gene is raiA [H]

Identifier: 238921075

GI number: 238921075

Start: 3088825

End: 3089136

Strand: Direct

Name: raiA [H]

Synonym: NT01EI_3210

Alternate gene names: 238921075

Gene position: 3088825-3089136 (Clockwise)

Preceding gene: 238921074

Following gene: 238921076

Centisome position: 81.02

GC content: 50.32

Gene sequence:

>312_bases
ATGGAAATCACTGCTGCCATCCGTGAACATGTCGAAGACCGTCTCAGCAAACTGGACAAATGGCAAACGCACCTAATTAA
TCCTCATATCATTCTGTCTAAGGAGCCGCAGGGTTTTGTGGTTGACGCCACGATTAATACGCCCAATGGCCAACTGGTCG
CCAGCGCCAAACATGAAGACATGTATACCGCGATCAACGAGCTGCTGAACAAGCTGGAGCGTCAGCTAAACAAAGTCCAG
CATAAAGGGGAAGCTCGCCGTGCCCATACCAGCGTAAAAGATGCTAATCTACAGGTCGCTGCCAGCGAATAG

Upstream 100 bases:

>100_bases
TTTCCTCTCACACTTTGCTCCGTGGCGCGTTATGCTGAAATCATCAAAGCGGAAAAGACAGAGAGGTATCTGTATGACTA
TCAGTATTACCAGCAAACAA

Downstream 100 bases:

>100_bases
CCTAAAATAAGCCCTTTTATTTAGATATAACGCGTCCATCGGGCGCGTTTTTTATTGATACAAAAAACGTTGACAGGAAA
AAAGTATCACGGTTAACGTA

Product: ribosomal subunit interface protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 103; Mature: 103

Protein sequence:

>103_residues
MEITAAIREHVEDRLSKLDKWQTHLINPHIILSKEPQGFVVDATINTPNGQLVASAKHEDMYTAINELLNKLERQLNKVQ
HKGEARRAHTSVKDANLQVAASE

Sequences:

>Translated_103_residues
MEITAAIREHVEDRLSKLDKWQTHLINPHIILSKEPQGFVVDATINTPNGQLVASAKHEDMYTAINELLNKLERQLNKVQ
HKGEARRAHTSVKDANLQVAASE
>Mature_103_residues
MEITAAIREHVEDRLSKLDKWQTHLINPHIILSKEPQGFVVDATINTPNGQLVASAKHEDMYTAINELLNKLERQLNKVQ
HKGEARRAHTSVKDANLQVAASE

Specific function: During environmental stress such as cold shock or excessive cell density at stationary phase, stabilizes the 70S ribosome against dissociation, inhibits translation initiation and increase translation accuracy. When normal growth conditions are restored,

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

Organism=Escherichia coli, GI1788949, Length=97, Percent_Identity=87.6288659793814, Blast_Score=180, Evalue=1e-47,
Organism=Escherichia coli, GI1789595, Length=78, Percent_Identity=38.4615384615385, Blast_Score=59, Evalue=5e-11,

Paralogues:

None

Copy number: 600 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 11615; Mature: 11615

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEITAAIREHVEDRLSKLDKWQTHLINPHIILSKEPQGFVVDATINTPNGQLVASAKHED
CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCEEEECCHHH
MYTAINELLNKLERQLNKVQHKGEARRAHTSVKDANLQVAASE
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECC
>Mature Secondary Structure
MEITAAIREHVEDRLSKLDKWQTHLINPHIILSKEPQGFVVDATINTPNGQLVASAKHED
CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCEEEECCHHH
MYTAINELLNKLERQLNKVQHKGEARRAHTSVKDANLQVAASE
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]