Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
---|---|
Accession | NC_012779 |
Length | 3,812,315 |
Click here to switch to the map view.
The map label for this gene is 238921011
Identifier: 238921011
GI number: 238921011
Start: 3023551
End: 3023979
Strand: Direct
Name: 238921011
Synonym: NT01EI_3141
Alternate gene names: NA
Gene position: 3023551-3023979 (Clockwise)
Preceding gene: 238921010
Following gene: 238921012
Centisome position: 79.31
GC content: 55.94
Gene sequence:
>429_bases ATGATGATGACGCTGGGGCTGTTTGTTTTCAGTCTGAAAACCCTGCCCTATCAGGATCTGCAACAGTCGATATCCTGGCG ACATCCCACCAGTTCCCGCGTGGGTCAACGCCCTGCAAGCCAGTTTATCGGCGTAGGCGACGAGGCTGTTACGCTAAACG GCGTACTGCTGCCGGAACTCACTGGTGGACGCTTTACCCTGTTCTTTCTGCGCAAAATGGCCGATCAGGGAATGGGTTGG CCACTGATCGAAGGGACCGGCACCATGCTGGGGTGGTTCGTCATTGAAAGCGTAAACATCACCAAAAGCGTTTTTTTCCG CGACGGCGCCGCCCGGCGTATTGAATTTACCCTGGCGCTAAAACGCATCGATCCGCCGAAGCCGGGCGGCAAGATGGGAG ACATCATCGCAATGGTGGATGGGCTATGA
Upstream 100 bases:
>100_bases CAGCTGGCAAAACTGGTGGTGCAAGAACTGGACAGGCGCGAACGGCAGAATGCCGCCAGAAATCGCAGCAGCCTGCGCGA TATTGACTAAGGAGACGCTT
Downstream 100 bases:
>100_bases CGCCTGCGCTGAATGGCCAGCCCACGCCGGAATACCGCATCACGCTGGATGGTGTTGACGTCTCATCGCAGCTGAAAAAC CGGTTAATCAGCTTCACGCT
Product: hypothetical protein
Products: NA
Alternate protein names: Phage Tail Protein; Phage P2 GpU; Phage-Related Tail Protein; Phage P2 GpU Family Protein; Phage Protein U; Phage Tail Protein U; Fels-2 Prophage Protein; Tail Fiber Protein; Phage-Related Protein; Phage Tail Assembly Protein; Bacteriophage Tail Fiber Protein U; Bacteriophage Tail Protein U; Phage P2 GpU Protein; Prophage Tail Protein; Phage-Like Tail Protein; Bacteriophage P2 Phage-Related Tail U Protein; Tail Assembly Protein; Bacteriophage Tail Protein; Tail Fiber Protein Of Prophage; Bacteriophage P2 Tail Protein GPU; Phage Tail; Tail Protein; Tail Protein U
Number of amino acids: Translated: 142; Mature: 142
Protein sequence:
>142_residues MMMTLGLFVFSLKTLPYQDLQQSISWRHPTSSRVGQRPASQFIGVGDEAVTLNGVLLPELTGGRFTLFFLRKMADQGMGW PLIEGTGTMLGWFVIESVNITKSVFFRDGAARRIEFTLALKRIDPPKPGGKMGDIIAMVDGL
Sequences:
>Translated_142_residues MMMTLGLFVFSLKTLPYQDLQQSISWRHPTSSRVGQRPASQFIGVGDEAVTLNGVLLPELTGGRFTLFFLRKMADQGMGW PLIEGTGTMLGWFVIESVNITKSVFFRDGAARRIEFTLALKRIDPPKPGGKMGDIIAMVDGL >Mature_142_residues MMMTLGLFVFSLKTLPYQDLQQSISWRHPTSSRVGQRPASQFIGVGDEAVTLNGVLLPELTGGRFTLFFLRKMADQGMGW PLIEGTGTMLGWFVIESVNITKSVFFRDGAARRIEFTLALKRIDPPKPGGKMGDIIAMVDGL
Specific function: Unknown
COG id: COG3499
COG function: function code R; Phage protein U
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15695; Mature: 15695
Theoretical pI: Translated: 10.27; Mature: 10.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.6 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 5.6 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMMTLGLFVFSLKTLPYQDLQQSISWRHPTSSRVGQRPASQFIGVGDEAVTLNGVLLPEL CEEEHHHHHHHHHCCCHHHHHHHCCCCCCCCCHHCCCCHHHHCCCCCCEEEECCEEECCC TGGRFTLFFLRKMADQGMGWPLIEGTGTMLGWFVIESVNITKSVFFRDGAARRIEFTLAL CCCCHHHHHHHHHHHCCCCCEEECCCCCEEEEHHHCCCCCHHEEEECCCCCCEEEEEEEE KRIDPPKPGGKMGDIIAMVDGL ECCCCCCCCCCCCCEEEEECCC >Mature Secondary Structure MMMTLGLFVFSLKTLPYQDLQQSISWRHPTSSRVGQRPASQFIGVGDEAVTLNGVLLPEL CEEEHHHHHHHHHCCCHHHHHHHCCCCCCCCCHHCCCCHHHHCCCCCCEEEECCEEECCC TGGRFTLFFLRKMADQGMGWPLIEGTGTMLGWFVIESVNITKSVFFRDGAARRIEFTLAL CCCCHHHHHHHHHHHCCCCCEEECCCCCEEEEHHHCCCCCHHEEEECCCCCCEEEEEEEE KRIDPPKPGGKMGDIIAMVDGL ECCCCCCCCCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA