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The map label for this gene is yagA [C]

Identifier: 238920924

GI number: 238920924

Start: 2936955

End: 2937710

Strand: Direct

Name: yagA [C]

Synonym: NT01EI_3052

Alternate gene names: 238920924

Gene position: 2936955-2937710 (Clockwise)

Preceding gene: 238920923

Following gene: 238920925

Centisome position: 77.04

GC content: 50.13

Gene sequence:

>756_bases
ATGATGCAAAGCCGCACGGTGTATAACTATCGTAGCTGCCGTGATGATCGGGCCGTCACCTTACGGATAAGGGAAATAGC
TGAAACCCGCATTCGCTACGGAGTTCAGCGTATTCATATTCTTCTACGCCGCGAAGGTTGGCTGATTAATCATAAGAAAA
CACACCGAATTTATTGTCAGGAAGGTCTGAATTTACGGACGAAACGCCCCCGACGGCATGTGACAGCCCGGCAGAGAAGC
GTCCGTCCGGAAGTGACGGCCATAGACCAGTGCTGGAGCATGGACTTCGTTGCTGATAATCTGTTCAACGGACGCCGTAT
CCGTGCATTGACTGTAGTCGATAATTTTAGTCGTGAGTGCCTGGCGATCCATGTAGGTCAGGGGCTACGTGGGGAAGATG
TCGTCACGGTGATGGCGCGTTTAAAAGCGTTAAGACAGCGGGTTCCCGAACGGCTTCAGACAGACAATGGCAGTGAATTT
ATATCTAAAGCGCTGGATCACTGGGCATATGAAAATGGTATAACAATGGACTTCTCACGGCCGGGAAAACCGACGGATAA
TGCGCTGATCGAGTCATTTAACGGCAGTGTTCGGGATGAGTGTCTGAACGTTCATTGGTTCCTGTCACTGGACGATGCGC
AGGAAAAGATCGAGCAGTGGCGACAGGAATATAATCGAAGCAGACCCCATTCATCGTTAAATAACCAGACTCCGGAGGAA
TTCATCCAAATCCTGCAAAAAGGCCCGGATCTCTGA

Upstream 100 bases:

>100_bases
AGGTTATCAAAAAAAAGTTCTAAGGCCGGCGCAGAAGCGCGAGGCCATCGCCTGGCTGTTGGAGGCCTACCGTATCGGGT
TACGTCGGGGTTGCCGTCTG

Downstream 100 bases:

>100_bases
TTTAGCCATGCCCTAATATTGGGGGGAGATCAAAAGTGAGAACAACTAGCGCATAAAAAACCACACTTTACCTCACAAAC
AAATTACAAAAATCGATTAT

Product: integrase core domain protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MMQSRTVYNYRSCRDDRAVTLRIREIAETRIRYGVQRIHILLRREGWLINHKKTHRIYCQEGLNLRTKRPRRHVTARQRS
VRPEVTAIDQCWSMDFVADNLFNGRRIRALTVVDNFSRECLAIHVGQGLRGEDVVTVMARLKALRQRVPERLQTDNGSEF
ISKALDHWAYENGITMDFSRPGKPTDNALIESFNGSVRDECLNVHWFLSLDDAQEKIEQWRQEYNRSRPHSSLNNQTPEE
FIQILQKGPDL

Sequences:

>Translated_251_residues
MMQSRTVYNYRSCRDDRAVTLRIREIAETRIRYGVQRIHILLRREGWLINHKKTHRIYCQEGLNLRTKRPRRHVTARQRS
VRPEVTAIDQCWSMDFVADNLFNGRRIRALTVVDNFSRECLAIHVGQGLRGEDVVTVMARLKALRQRVPERLQTDNGSEF
ISKALDHWAYENGITMDFSRPGKPTDNALIESFNGSVRDECLNVHWFLSLDDAQEKIEQWRQEYNRSRPHSSLNNQTPEE
FIQILQKGPDL
>Mature_251_residues
MMQSRTVYNYRSCRDDRAVTLRIREIAETRIRYGVQRIHILLRREGWLINHKKTHRIYCQEGLNLRTKRPRRHVTARQRS
VRPEVTAIDQCWSMDFVADNLFNGRRIRALTVVDNFSRECLAIHVGQGLRGEDVVTVMARLKALRQRVPERLQTDNGSEF
ISKALDHWAYENGITMDFSRPGKPTDNALIESFNGSVRDECLNVHWFLSLDDAQEKIEQWRQEYNRSRPHSSLNNQTPEE
FIQILQKGPDL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=233, Percent_Identity=29.6137339055794, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1789981, Length=239, Percent_Identity=28.0334728033473, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1790724, Length=243, Percent_Identity=28.3950617283951, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789424, Length=243, Percent_Identity=28.3950617283951, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789224, Length=243, Percent_Identity=28.3950617283951, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788305, Length=243, Percent_Identity=28.3950617283951, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787669, Length=243, Percent_Identity=28.3950617283951, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786558, Length=243, Percent_Identity=28.3950617283951, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 29559; Mature: 29559

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMQSRTVYNYRSCRDDRAVTLRIREIAETRIRYGVQRIHILLRREGWLINHKKTHRIYCQ
CCCCCCCHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEC
EGLNLRTKRPRRHVTARQRSVRPEVTAIDQCWSMDFVADNLFNGRRIRALTVVDNFSREC
CCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCE
LAIHVGQGLRGEDVVTVMARLKALRQRVPERLQTDNGSEFISKALDHWAYENGITMDFSR
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEECCC
PGKPTDNALIESFNGSVRDECLNVHWFLSLDDAQEKIEQWRQEYNRSRPHSSLNNQTPEE
CCCCCHHHHHHHCCCHHHHHHEEEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
FIQILQKGPDL
HHHHHHCCCCC
>Mature Secondary Structure
MMQSRTVYNYRSCRDDRAVTLRIREIAETRIRYGVQRIHILLRREGWLINHKKTHRIYCQ
CCCCCCCHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEC
EGLNLRTKRPRRHVTARQRSVRPEVTAIDQCWSMDFVADNLFNGRRIRALTVVDNFSREC
CCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCE
LAIHVGQGLRGEDVVTVMARLKALRQRVPERLQTDNGSEFISKALDHWAYENGITMDFSR
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEECCC
PGKPTDNALIESFNGSVRDECLNVHWFLSLDDAQEKIEQWRQEYNRSRPHSSLNNQTPEE
CCCCCHHHHHHHCCCHHHHHHEEEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
FIQILQKGPDL
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]