Click here to switch to the map view.

The map label for this gene is ybcJ [H]

Identifier: 238920878

GI number: 238920878

Start: 2892675

End: 2892887

Strand: Direct

Name: ybcJ [H]

Synonym: NT01EI_3005

Alternate gene names: 238920878

Gene position: 2892675-2892887 (Clockwise)

Preceding gene: 238920877

Following gene: 238920880

Centisome position: 75.88

GC content: 62.44

Gene sequence:

>213_bases
ATGCAAACTTTCCATCTGGACAATCATCCGCACGTCGAGCTGTGCGATCTGCTGAAGCTGCAGGGCTGGTGCGACAGCGG
CGCCCAGGCCAAAAACCTGATTGCCGAGGGGCAGGTTAAGGTCGACGGCGCGGTCGAAACGCGCAAGCGCGCAAAGATTG
TCGCAGGCCAGCTGGTCGACTTCGCCGGGCAGCAGGCGCGCGTCATCGCCTAA

Upstream 100 bases:

>100_bases
CCCCAGACGCAGCTTTCCCGTGCGCCGGGCGCTGCAGACTGGCACAATAGCGGCGTGTCCGCCCGCGCGGCGGTTAATTT
TTAAGGCAAGAGAAAAGACC

Downstream 100 bases:

>100_bases
GCTGAACGCCAGACGTAAAAAAGCCGGACCCGGGTCCGGCTTTTTGCGCATTATCGCCCGGCCTTACTTACGCCGCCAGG
TGGTACCCTGCGGCCCATCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 70; Mature: 70

Protein sequence:

>70_residues
MQTFHLDNHPHVELCDLLKLQGWCDSGAQAKNLIAEGQVKVDGAVETRKRAKIVAGQLVDFAGQQARVIA

Sequences:

>Translated_70_residues
MQTFHLDNHPHVELCDLLKLQGWCDSGAQAKNLIAEGQVKVDGAVETRKRAKIVAGQLVDFAGQQARVIA
>Mature_70_residues
MQTFHLDNHPHVELCDLLKLQGWCDSGAQAKNLIAEGQVKVDGAVETRKRAKIVAGQLVDFAGQQARVIA

Specific function: Its structure and the presence of conserved basic residues indicates that it probably binds RNA [H]

COG id: COG2501

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081752, Length=70, Percent_Identity=75.7142857142857, Blast_Score=109, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 7639; Mature: 7639

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTFHLDNHPHVELCDLLKLQGWCDSGAQAKNLIAEGQVKVDGAVETRKRAKIVAGQLVD
CCEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHCCCCEEECCCCHHHHHHHHHHHHHHH
FAGQQARVIA
CCCCCEEECC
>Mature Secondary Structure
MQTFHLDNHPHVELCDLLKLQGWCDSGAQAKNLIAEGQVKVDGAVETRKRAKIVAGQLVD
CCEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHCCCCEEECCCCHHHHHHHHHHHHHHH
FAGQQARVIA
CCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 1748668; 7567469 [H]