Click here to switch to the map view.

The map label for this gene is caiF [H]

Identifier: 238920843

GI number: 238920843

Start: 2857491

End: 2857928

Strand: Direct

Name: caiF [H]

Synonym: NT01EI_2969

Alternate gene names: 238920843

Gene position: 2857491-2857928 (Clockwise)

Preceding gene: 238920841

Following gene: 238920845

Centisome position: 74.95

GC content: 56.62

Gene sequence:

>438_bases
ATGGGTGGAAATATGCGTAGAGAATATGCTCAGGAACCTTTATATCTGTCTGTTGCACGCTGGGTGATGCAACAGCAGCG
TTGGGTCAGCGCCCGCGAGATAGCCCAACAGTTCGACCTTTCTCCCTGCAAAGCCATCAACACCGTCTCCTATATTTTAT
CCGGTGTGGAGGAGATTACCTGTCAAACCAAAACGGTCCCCAATCAGCTAGAGGGCCGCGGCTGTCAGTGCCAGCGCCTG
ATCCAGGTCACCCACATCGATGAGCTGATCGCCGCGCGGATCAGCAACGCCATCAACACGGATAGCGAAGGCGCCAACGC
AGAGCAGCAGGCCGTGGAAGCCGAGGCCGTCGCACGCATGGCCATCCGCGTCCCCCCCGATGAGCTCAACCGCGAACAAA
AATGGCAGTGGATGCTCTCCAAGGCACAACGTAAATAA

Upstream 100 bases:

>100_bases
AGCCTGTATGCACAGACGTCAGCGATGCTGTCAGGATGCCTCTCGAATATTGCACGACAGGTTACAGAATCCTGTTAATT
GTATTAATCATTCTGGTTAA

Downstream 100 bases:

>100_bases
GGGCAGGCTCGTACCGGGAAAGTTTACCCATCCGCACCATTCCACCCGCCACCGACGCCCAGAGGGTGGCAGAATCAGTC
CGGTGCGGACGGGTAATCAT

Product: DNA-binding transcriptional activator CaiF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MGGNMRREYAQEPLYLSVARWVMQQQRWVSAREIAQQFDLSPCKAINTVSYILSGVEEITCQTKTVPNQLEGRGCQCQRL
IQVTHIDELIAARISNAINTDSEGANAEQQAVEAEAVARMAIRVPPDELNREQKWQWMLSKAQRK

Sequences:

>Translated_145_residues
MGGNMRREYAQEPLYLSVARWVMQQQRWVSAREIAQQFDLSPCKAINTVSYILSGVEEITCQTKTVPNQLEGRGCQCQRL
IQVTHIDELIAARISNAINTDSEGANAEQQAVEAEAVARMAIRVPPDELNREQKWQWMLSKAQRK
>Mature_144_residues
GGNMRREYAQEPLYLSVARWVMQQQRWVSAREIAQQFDLSPCKAINTVSYILSGVEEITCQTKTVPNQLEGRGCQCQRLI
QVTHIDELIAARISNAINTDSEGANAEQQAVEAEAVARMAIRVPPDELNREQKWQWMLSKAQRK

Specific function: Potential transcriptional activator of carnitine metabolism [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081680, Length=137, Percent_Identity=51.0948905109489, Blast_Score=143, Evalue=5e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020357
- ProDom:   PD081346 [H]

Pfam domain/function: PF07180 DUF1401 [H]

EC number: NA

Molecular weight: Translated: 16518; Mature: 16387

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGNMRREYAQEPLYLSVARWVMQQQRWVSAREIAQQFDLSPCKAINTVSYILSGVEEIT
CCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
CQTKTVPNQLEGRGCQCQRLIQVTHIDELIAARISNAINTDSEGANAEQQAVEAEAVARM
HHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
AIRVPPDELNREQKWQWMLSKAQRK
HHCCCHHHCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GGNMRREYAQEPLYLSVARWVMQQQRWVSAREIAQQFDLSPCKAINTVSYILSGVEEIT
CCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
CQTKTVPNQLEGRGCQCQRLIQVTHIDELIAARISNAINTDSEGANAEQQAVEAEAVARM
HHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
AIRVPPDELNREQKWQWMLSKAQRK
HHCCCHHHCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8631699; 9278503 [H]