Click here to switch to the map view.

The map label for this gene is fixB [H]

Identifier: 238920838

GI number: 238920838

Start: 2851976

End: 2852917

Strand: Direct

Name: fixB [H]

Synonym: NT01EI_2964

Alternate gene names: 238920838

Gene position: 2851976-2852917 (Clockwise)

Preceding gene: 238920837

Following gene: 238920839

Centisome position: 74.81

GC content: 64.23

Gene sequence:

>942_bases
ATGAGCAAATATGCAACCGTATGGATATTCAGCGACAGCGAATCACGTCTGGCAGAGCTGATGGGCGGCGCACGCGCGCT
GGGTGACAACGTGCAGGCCGTAGTGCTGGGCGATGCCCAGGCGGCGCTGGCCTTCCGCCTCGGTGCCGACGCCGTGCATG
ATCTCGGCGTCCTGCCTGCCGAGCGTATCATCGAAGATTACGCGGATACCCTGGTGCAGGCCATCCGCGCCCACGGCGAA
CGGTCGCTGGTGCTGCTGCCAGCCAGCCGCCGCGGCAAAGCGCTGGCCGCCCGCCTCGGTGCCCGACTGCAGGGCGGTGT
GGTCAACGACGCCAGCGAAGTGACCCTGGAGGCGGGTCAGCCCATCGCCACCCACATGGTGTACGGCGGCCTGGCGCTGG
GTAAAGAGCGCATCGATACTCCTTACGCAGTCATCACCCTGGCCAGTGGCGCCTTTGCCGCCGCCGCCGAAGACGCCGCA
CGCAGCGGCAGCGCCAGCGAGCTGGCCTTTGTGGCGCCTGCACAGCCCGTCATCTGCCTATCCCGCCGCGCCAAGCAGGG
TGAAAACGTCGATCTGGGCAAGGCGCGCAGGGTTGTCAGCGTCGGGCGCGGCATCGGCAACCAGCAGAACATCACGCTGG
CGCAAGCCTTCAGCGATAGCATCGGTGCCGAACTGGGCTGCTCACGCCCGGTGGCAGAAAACGAGAAGTGGATGGATCGT
GAACGCTATGTCGGGATCTCCGGCATCATGATCAAGCCAGATCTGTATCTGGCCCTGGGGATCTCAGGACAGATCCAGCA
CATGGTCGGCGCCAACGGCGCACAGACCATCATGGCGATCAACAAGGATAAAAATGCCCCGATCTTCCAGTATGCCGACT
ACGGCATCGTCGGCGATCTGGTAAAAATCGTCCCCGCCCTGACCGAAGCCCTGAAACGCTAG

Upstream 100 bases:

>100_bases
AGAAGGCGCGTGCGCGGGTGATCATCGAAGGGGACGGCGAAGAACAAATCGCCGAGTTTGCAGAATATCTACGCAAAATC
GTGCGTTAATGGGGAACAAC

Downstream 100 bases:

>100_bases
CCGTATGGCCGGTGCCGTCACACCGGCGCCGGCCGCATTATCTGCCACTGGAGACACCATGTCTGAAGATGCATTTGACG
CAATTATTGTCGGCGCCGGT

Product: protein FixB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MSKYATVWIFSDSESRLAELMGGARALGDNVQAVVLGDAQAALAFRLGADAVHDLGVLPAERIIEDYADTLVQAIRAHGE
RSLVLLPASRRGKALAARLGARLQGGVVNDASEVTLEAGQPIATHMVYGGLALGKERIDTPYAVITLASGAFAAAAEDAA
RSGSASELAFVAPAQPVICLSRRAKQGENVDLGKARRVVSVGRGIGNQQNITLAQAFSDSIGAELGCSRPVAENEKWMDR
ERYVGISGIMIKPDLYLALGISGQIQHMVGANGAQTIMAINKDKNAPIFQYADYGIVGDLVKIVPALTEALKR

Sequences:

>Translated_313_residues
MSKYATVWIFSDSESRLAELMGGARALGDNVQAVVLGDAQAALAFRLGADAVHDLGVLPAERIIEDYADTLVQAIRAHGE
RSLVLLPASRRGKALAARLGARLQGGVVNDASEVTLEAGQPIATHMVYGGLALGKERIDTPYAVITLASGAFAAAAEDAA
RSGSASELAFVAPAQPVICLSRRAKQGENVDLGKARRVVSVGRGIGNQQNITLAQAFSDSIGAELGCSRPVAENEKWMDR
ERYVGISGIMIKPDLYLALGISGQIQHMVGANGAQTIMAINKDKNAPIFQYADYGIVGDLVKIVPALTEALKR
>Mature_312_residues
SKYATVWIFSDSESRLAELMGGARALGDNVQAVVLGDAQAALAFRLGADAVHDLGVLPAERIIEDYADTLVQAIRAHGER
SLVLLPASRRGKALAARLGARLQGGVVNDASEVTLEAGQPIATHMVYGGLALGKERIDTPYAVITLASGAFAAAAEDAAR
SGSASELAFVAPAQPVICLSRRAKQGENVDLGKARRVVSVGRGIGNQQNITLAQAFSDSIGAELGCSRPVAENEKWMDRE
RYVGISGIMIKPDLYLALGISGQIQHMVGANGAQTIMAINKDKNAPIFQYADYGIVGDLVKIVPALTEALKR

Specific function: Required for anaerobic carnitine reduction. May bring reductant to CaiA [H]

COG id: COG2025

COG function: function code C; Electron transfer flavoprotein, alpha subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ETF alpha-subunit/fixB family [H]

Homologues:

Organism=Homo sapiens, GI4503607, Length=265, Percent_Identity=33.9622641509434, Blast_Score=132, Evalue=3e-31,
Organism=Homo sapiens, GI189181759, Length=265, Percent_Identity=34.3396226415094, Blast_Score=132, Evalue=3e-31,
Organism=Escherichia coli, GI1786226, Length=313, Percent_Identity=60.702875399361, Blast_Score=389, Evalue=1e-109,
Organism=Escherichia coli, GI1787990, Length=313, Percent_Identity=47.9233226837061, Blast_Score=306, Evalue=1e-84,
Organism=Escherichia coli, GI87082157, Length=284, Percent_Identity=28.169014084507, Blast_Score=84, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI17506929, Length=320, Percent_Identity=30, Blast_Score=119, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6325261, Length=249, Percent_Identity=30.1204819277108, Blast_Score=108, Evalue=1e-24,
Organism=Drosophila melanogaster, GI17136898, Length=250, Percent_Identity=34.8, Blast_Score=113, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24652801, Length=250, Percent_Identity=34.8, Blast_Score=113, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001308
- InterPro:   IPR014730
- InterPro:   IPR014731
- InterPro:   IPR018206
- InterPro:   IPR014729 [H]

Pfam domain/function: PF01012 ETF; PF00766 ETF_alpha [H]

EC number: NA

Molecular weight: Translated: 32934; Mature: 32803

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: PS00696 ETF_ALPHA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKYATVWIFSDSESRLAELMGGARALGDNVQAVVLGDAQAALAFRLGADAVHDLGVLPA
CCCEEEEEEEECCHHHHHHHHCCHHHCCCCCEEEEEECCHHHHHHHHCCHHHHHHCCCCH
ERIIEDYADTLVQAIRAHGERSLVLLPASRRGKALAARLGARLQGGVVNDASEVTLEAGQ
HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCHHCCCCCCCHHHEEEECCC
PIATHMVYGGLALGKERIDTPYAVITLASGAFAAAAEDAARSGSASELAFVAPAQPVICL
CHHHHHHHHHHHHCHHHCCCCEEEEEEECCCHHHHHHHHHCCCCCCCEEEECCCCCHHHH
SRRAKQGENVDLGKARRVVSVGRGIGNQQNITLAQAFSDSIGAELGCSRPVAENEKWMDR
HHHHCCCCCCCHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCCCCCCCCCCCHHHHHH
ERYVGISGIMIKPDLYLALGISGQIQHMVGANGAQTIMAINKDKNAPIFQYADYGIVGDL
HHEECCCEEEECCCEEEEECCCCCCHHHHCCCCCEEEEEEECCCCCCEEEECCCCHHHHH
VKIVPALTEALKR
HHHHHHHHHHHCC
>Mature Secondary Structure 
SKYATVWIFSDSESRLAELMGGARALGDNVQAVVLGDAQAALAFRLGADAVHDLGVLPA
CCEEEEEEEECCHHHHHHHHCCHHHCCCCCEEEEEECCHHHHHHHHCCHHHHHHCCCCH
ERIIEDYADTLVQAIRAHGERSLVLLPASRRGKALAARLGARLQGGVVNDASEVTLEAGQ
HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCHHCCCCCCCHHHEEEECCC
PIATHMVYGGLALGKERIDTPYAVITLASGAFAAAAEDAARSGSASELAFVAPAQPVICL
CHHHHHHHHHHHHCHHHCCCCEEEEEEECCCHHHHHHHHHCCCCCCCEEEECCCCCHHHH
SRRAKQGENVDLGKARRVVSVGRGIGNQQNITLAQAFSDSIGAELGCSRPVAENEKWMDR
HHHHCCCCCCCHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCCCCCCCCCCCHHHHHH
ERYVGISGIMIKPDLYLALGISGQIQHMVGANGAQTIMAINKDKNAPIFQYADYGIVGDL
HHEECCCEEEECCCEEEEECCCCCCHHHHCCCCCEEEEEEECCCCCCEEEECCCCHHHHH
VKIVPALTEALKR
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA