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The map label for this gene is ytcP [H]

Identifier: 238917517

GI number: 238917517

Start: 1649574

End: 1650440

Strand: Reverse

Name: ytcP [H]

Synonym: EUBELI_01596

Alternate gene names: 238917517

Gene position: 1650440-1649574 (Counterclockwise)

Preceding gene: 238917518

Following gene: 238917516

Centisome position: 76.97

GC content: 33.79

Gene sequence:

>867_bases
ATGAGTGATAGTACAACATTAGTTTACAAAAAGAAAAAGAAAAAATTTAAAATATTCCCATTAGTTAATGCAATATTCTT
TATTATTGTTGCATGCTTGATTATGATACCAATTTATCGAGTAATTATCAGTTCTATTGATGCTAATACTTCATACAACT
TTGTATGGTTACCATCTAAGTTTACATGGGGTGGATATACAGCCGTATTAACCAGATCAAGCTTATATACACCATTCTTG
ATTTCAGTTGTTACAACAATTATTGGTACATTTGTTGGACTTTTAGTTGTAACACTTGGTGGTTATGTATTAATTCAGTG
GGAGATGCCAGGAAGAAACTTCTTCGCTTATATGCTTCTCTTCACAATGATTTTCGATGGTGGTATGATTCCTAAGTACC
TTGTTATCAAGCAGTTGGGATTAATGAATACACTTTGGGCAGTTATTTTACCAATGTCAATCAATGTATATAACTTAGTT
CTTATGAGAAACTTCTTTGAAGGTATCCCAGAGTCTCTTTTTGAGGCAGCTCAGATTGATGGATGCTCTCCAATGGGAAT
TTTCTTTAAGATTGTTCTTCCTCTTTCAAAGGCAGCTCTTGCATCAATTGGTTTGATGTTCGCAGTTAGTTTCTGGAATG
ATTATACAAACTTCAAGTTATATATTACTAAGAATAAGCTGTTCAACTTCCAGATTCAGTTAAGAAACATGGTTATTGAT
AGTGATATTCCAGTTGATGACGCAGTTAATCAGGAAACAATTGGTAATGCAGCTACAATCATTGCTATTCTTCCTTTCAT
GATTATCTACCCATTCTGTCAGAAGTACTTCGTACAGGGTGTTAACGTAGGTGCCGTTAAGGAGTAA

Upstream 100 bases:

>100_bases
GGTTTATTTAAGTCGTTCGTTGGTATGATCTTAGTTCTCGGTTGTAACTGGGCAAGTAAGAAAGTACGTGGACGTGGTAT
TGTATAGGAGGGAATAAATA

Downstream 100 bases:

>100_bases
TGTTAATATTTTGAATTTATTTAAGGCGGGTCCATATGGACTCGCCTTTTTGCGCGAGTAGCGATGAGAATGTACAATCA
AATGCACCAGCTATGCTCGC

Product: sugar ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 287

Protein sequence:

>288_residues
MSDSTTLVYKKKKKKFKIFPLVNAIFFIIVACLIMIPIYRVIISSIDANTSYNFVWLPSKFTWGGYTAVLTRSSLYTPFL
ISVVTTIIGTFVGLLVVTLGGYVLIQWEMPGRNFFAYMLLFTMIFDGGMIPKYLVIKQLGLMNTLWAVILPMSINVYNLV
LMRNFFEGIPESLFEAAQIDGCSPMGIFFKIVLPLSKAALASIGLMFAVSFWNDYTNFKLYITKNKLFNFQIQLRNMVID
SDIPVDDAVNQETIGNAATIIAILPFMIIYPFCQKYFVQGVNVGAVKE

Sequences:

>Translated_288_residues
MSDSTTLVYKKKKKKFKIFPLVNAIFFIIVACLIMIPIYRVIISSIDANTSYNFVWLPSKFTWGGYTAVLTRSSLYTPFL
ISVVTTIIGTFVGLLVVTLGGYVLIQWEMPGRNFFAYMLLFTMIFDGGMIPKYLVIKQLGLMNTLWAVILPMSINVYNLV
LMRNFFEGIPESLFEAAQIDGCSPMGIFFKIVLPLSKAALASIGLMFAVSFWNDYTNFKLYITKNKLFNFQIQLRNMVID
SDIPVDDAVNQETIGNAATIIAILPFMIIYPFCQKYFVQGVNVGAVKE
>Mature_287_residues
SDSTTLVYKKKKKKFKIFPLVNAIFFIIVACLIMIPIYRVIISSIDANTSYNFVWLPSKFTWGGYTAVLTRSSLYTPFLI
SVVTTIIGTFVGLLVVTLGGYVLIQWEMPGRNFFAYMLLFTMIFDGGMIPKYLVIKQLGLMNTLWAVILPMSINVYNLVL
MRNFFEGIPESLFEAAQIDGCSPMGIFFKIVLPLSKAALASIGLMFAVSFWNDYTNFKLYITKNKLFNFQIQLRNMVIDS
DIPVDDAVNQETIGNAATIIAILPFMIIYPFCQKYFVQGVNVGAVKE

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=188, Percent_Identity=28.7234042553192, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787571, Length=193, Percent_Identity=24.8704663212435, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32546; Mature: 32415

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDSTTLVYKKKKKKFKIFPLVNAIFFIIVACLIMIPIYRVIISSIDANTSYNFVWLPSK
CCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
FTWGGYTAVLTRSSLYTPFLISVVTTIIGTFVGLLVVTLGGYVLIQWEMPGRNFFAYMLL
CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHH
FTMIFDGGMIPKYLVIKQLGLMNTLWAVILPMSINVYNLVLMRNFFEGIPESLFEAAQID
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHCC
GCSPMGIFFKIVLPLSKAALASIGLMFAVSFWNDYTNFKLYITKNKLFNFQIQLRNMVID
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEEEEEEEEC
SDIPVDDAVNQETIGNAATIIAILPFMIIYPFCQKYFVQGVNVGAVKE
CCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SDSTTLVYKKKKKKFKIFPLVNAIFFIIVACLIMIPIYRVIISSIDANTSYNFVWLPSK
CCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
FTWGGYTAVLTRSSLYTPFLISVVTTIIGTFVGLLVVTLGGYVLIQWEMPGRNFFAYMLL
CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHH
FTMIFDGGMIPKYLVIKQLGLMNTLWAVILPMSINVYNLVLMRNFFEGIPESLFEAAQID
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHCC
GCSPMGIFFKIVLPLSKAALASIGLMFAVSFWNDYTNFKLYITKNKLFNFQIQLRNMVID
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEEEEEEEEC
SDIPVDDAVNQETIGNAATIIAILPFMIIYPFCQKYFVQGVNVGAVKE
CCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377; 8763940 [H]