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The map label for this gene is pnp [H]

Identifier: 238896671

GI number: 238896671

Start: 4649101

End: 4651236

Strand: Reverse

Name: pnp [H]

Synonym: KP1_4882

Alternate gene names: 238896671

Gene position: 4651236-4649101 (Counterclockwise)

Preceding gene: 238896672

Following gene: 238896670

Centisome position: 88.62

GC content: 57.16

Gene sequence:

>2136_bases
TTGCTTAATCCGATCGTTCGTAAATTCCAGTACGGCCAGCATACCGTGACCCTGGAAACCGGCATGATGGCGCGCCAGGC
AACGGCCGCTGTGATGGTTAGCATGGATGACACTGCGGTATTCGTTACCGTTGTGGGTCAGAAAAAAGCGAAGCCAGGCC
AGGACTTTTTCCCGCTGACCGTTAACTACCAGGAGCGTACCTACGCTGCCGGTAAAATCCCGGGTGGTTTCTTCCGTCGT
GAAGGCCGTCCAAGCGAAGGCGAAACCCTGATCGCGCGTCTGATTGACCGCCCGGTTCGCCCGCTGTTCCCGGAAGGCTT
CGTTAACGAAGTTCAGGTTATCGCTACCGTCGTTTCCGTTAACCCGCAGGTTAACCCAGACATCGTCGCGATGATCGGTG
CTTCCGCTGCGCTGTCGCTGTCTGGTATTCCGTTCAATGGCCCAATCGGCGCTGCGCGCGTGGGTTACATCAACGACCAG
TACGTACTGAACCCAACCCAGGAAGAACTGAAGTCCAGCAAACTGGACCTGGTGGTTGCCGGTACCGAAGCGGCCGTGCT
GATGGTGGAATCCGAAGCGGAACTGCTGAGCGAAGACCAGATGCTGGGCGCGGTGGTCTTCGGCCACGAGCAGCAGCAGA
TTGTTATTCAGAACATCAACGACCTGGTGAAAGAAGCCGGTAAACCGCGTTGGGACTGGCAGCCGGAAGCGGTCAACGAA
GCGCTGAACGCGCGCGTGGCTGCGCTGGCTGAATCCCGTCTGAGCGATGCTTACCGTATCACCGACAAACAAGAGCGTTA
CGCTCAGGTTGACGTGATCAAATCTGAAACCATCGCCACGCTGGTTGCTGAAGATGAAACCCTGGACGCTAACGAGCTGG
GTGAAATCCTGCACGCCATCGAGAAAAATGTGGTTCGTAGCCGCGTACTGGCCGGCGAGCCGCGTATCGATGGCCGTGAA
AAAGATATGATCCGTGGTCTGGACGTTCGTACCGGCGTTCTGCCGCGTACTCACGGTTCCGCGCTGTTCACCCGTGGCGA
AACGCAGGCGCTGGTTACCGCGACTCTGGGTACCGCACGCGATGCGCAGAACATCGACGAACTGATGGGCGAGCGCACCG
ACTCCTTCCTGTTCCACTACAACTTCCCTCCGTACTCCGTAGGCGAAACTGGCATGGTGGGGTCTCCGAAGCGTCGTGAA
ATCGGTCACGGTCGTCTGGCGAAGCGCGGCGTACTGGCCGTGATGCCGACTATTGAAGAATTCCCGTACACCGTGCGCGT
GGTATCGGAAATCACCGAATCTAACGGTTCCTCTTCCATGGCTTCCGTCTGCGGCGCCTCTCTGGCGCTGATGGACGCCG
GCGTGCCGGTAAAAGCCGCTGTGGCGGGTATCGCAATGGGTCTGGTGAAAGAAGGCGACAACTTCGTCGTGCTGTCTGAC
ATCCTCGGTGACGAAGACCACCTCGGCGATATGGACTTCAAAGTTGCGGGTTCCCGCGACGGTATCTCTGCGCTGCAGAT
GGATATCAAAATTGAAGGTATCACCAAAGAAATCATGCAGGTTGCATTGAACCAGGCTAAAGGTGCGCGTCTGCACATCC
TGGGCGTGATGGAGCAGGCGATTAACGCGCCGCGCGGCGATATCTCTGAATTCGCACCGCGTATCCACACCATCAAGATC
AACCCGGACAAGATCAAAGACGTTATCGGTAAAGGCGGTTCTGTTATCCGTGCCCTGACCGAAGAGACCGGTACTACCAT
CGAGATCGAAGATGACGGTACCGTGAAGATCGCAGCGACCGACGGCGACAAAGCGCAGCATGCTATCCGTCGTATCGAAG
AGATCACCGCTGAGATCGAAGTTGGCCGCATCTACAATGGTAAAGTGACCCGTATCGTTGACTTTGGCGCATTCGTTGCC
ATCGGCGGCGGTAAAGAAGGTCTGGTTCACATCTCGCAGATCGCTGACAAGCGCGTTGAGAAAGTGACTGACTACCTGCA
GATGGGTCAGGAAGTACCGGTTAAGGTTCTGGAAGTTGACCGCCAGGGCCGTGTCCGTCTGAGCATTAAAGAAGCAACTG
AACAGACTCCGTCTGCCGCAGCGCCGGAAGCTCCGGCTGCCGAGCAGGGCGAGTAA

Upstream 100 bases:

>100_bases
GCGGGTAAAGGTTGTCATTAGTCGCGAGGATGCAGAAGATCGGGTCAATAGACGCTATGTCGTGGATATGGCGTGATTTA
TAGATAAAAAGGATAGAATT

Downstream 100 bases:

>100_bases
GGTTGCCGTTAGCCCTCCCGCTTTTGCGGAGGGCGTTTTACGGGCAGGACGCCTCGTTTGCAGCCGGGGAACAGGACGTT
CATCCAATCGTTGTCTTCGG

Product: polynucleotide phosphorylase/polyadenylase

Products: NA

Alternate protein names: Polynucleotide phosphorylase; PNPase [H]

Number of amino acids: Translated: 711; Mature: 711

Protein sequence:

>711_residues
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGKIPGGFFRR
EGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQ
YVLNPTQEELKSSKLDLVVAGTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAVNE
ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIATLVAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGRE
KDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRRE
IGHGRLAKRGVLAVMPTIEEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLSD
ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKI
NPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGDKAQHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVA
IGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQTPSAAAPEAPAAEQGE

Sequences:

>Translated_711_residues
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGKIPGGFFRR
EGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQ
YVLNPTQEELKSSKLDLVVAGTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAVNE
ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIATLVAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGRE
KDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRRE
IGHGRLAKRGVLAVMPTIEEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLSD
ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKI
NPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGDKAQHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVA
IGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQTPSAAAPEAPAAEQGE
>Mature_711_residues
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGKIPGGFFRR
EGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQ
YVLNPTQEELKSSKLDLVVAGTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAVNE
ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIATLVAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGRE
KDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRRE
IGHGRLAKRGVLAVMPTIEEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLSD
ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKI
NPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGDKAQHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVA
IGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQTPSAAAPEAPAAEQGE

Specific function: Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3'- to 5'-direction [H]

COG id: COG1185

COG function: function code J; Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI188528628, Length=707, Percent_Identity=39.3210749646393, Blast_Score=450, Evalue=1e-126,
Organism=Escherichia coli, GI145693187, Length=711, Percent_Identity=95.9212376933896, Blast_Score=1370, Evalue=0.0,
Organism=Caenorhabditis elegans, GI115534063, Length=718, Percent_Identity=32.7298050139276, Blast_Score=342, Evalue=5e-94,
Organism=Caenorhabditis elegans, GI17535281, Length=80, Percent_Identity=45, Blast_Score=71, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6320850, Length=107, Percent_Identity=31.7757009345794, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI281362905, Length=728, Percent_Identity=37.3626373626374, Blast_Score=459, Evalue=1e-129,
Organism=Drosophila melanogaster, GI24651641, Length=728, Percent_Identity=37.3626373626374, Blast_Score=459, Evalue=1e-129,
Organism=Drosophila melanogaster, GI24651643, Length=728, Percent_Identity=37.3626373626374, Blast_Score=459, Evalue=1e-129,
Organism=Drosophila melanogaster, GI161079377, Length=675, Percent_Identity=36.8888888888889, Blast_Score=419, Evalue=1e-117,

Paralogues:

None

Copy number: 200 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1000 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 3328 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 3,000 Molecules/Cell In: Glucose minimal media

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001247
- InterPro:   IPR015847
- InterPro:   IPR004087
- InterPro:   IPR009019
- InterPro:   IPR004088
- InterPro:   IPR018111
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR012162
- InterPro:   IPR015848
- InterPro:   IPR003029
- InterPro:   IPR020568
- InterPro:   IPR022967 [H]

Pfam domain/function: PF00013 KH_1; PF03726 PNPase; PF01138 RNase_PH; PF03725 RNase_PH_C; PF00575 S1 [H]

EC number: =2.7.7.8 [H]

Molecular weight: Translated: 76847; Mature: 76847

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: PS50084 KH_TYPE_1 ; PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT
CCCHHHHHHHCCCEEEEEECCCHHHHCEEEEEEEECCCEEEEEEECCCCCCCCCCCEEEE
VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV
EECCCCEEECCCCCCHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHEEC
NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVA
CCCCCCCEEEEECCCCEEEECCCCCCCCCCCEEEEEECCCEEECCCHHHHCCCCCEEEEE
GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAVNE
CCCEEEEEEECCHHHHCCHHHEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHH
ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIATLVAEDETLDANELGEILHAI
HHHHHHHHHHHHHHCCCEECCCHHHHHHHHEEECCCCEEEEEECCCCCCHHHHHHHHHHH
EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR
HHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCC
DAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTIEE
CHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCHHCCCCCCHHHCCEEEEECCHHH
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLSD
CCHHHHHHHHHHHCCCCHHHHHHHHHHHEEHCCCCCHHHHHHHHHHHHHCCCCCEEEEHH
ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA
HCCCCCCCCCCCEEEECCCCCCEEEEEEEEEEHHHHHHHHHHHHHCCCCEEEEHHHHHHH
INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT
HCCCCCCHHHHCCCEEEEEECHHHHHHHHCCCCHHHHHHHHCCCCEEEECCCCEEEEEEC
DGDKAQHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
CCHHHHHHHHHHHHHHHHEEEEEEECCEEEEEEECCEEEEECCCCCCCEEHHHHHHHHHH
KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQTPSAAAPEAPAAEQGE
HHHHHHHCCCCCCEEEEEECCCCCEEEEEHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT
CCCHHHHHHHCCCEEEEEECCCHHHHCEEEEEEEECCCEEEEEEECCCCCCCCCCCEEEE
VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV
EECCCCEEECCCCCCHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHEEC
NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVA
CCCCCCCEEEEECCCCEEEECCCCCCCCCCCEEEEEECCCEEECCCHHHHCCCCCEEEEE
GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAVNE
CCCEEEEEEECCHHHHCCHHHEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHH
ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIATLVAEDETLDANELGEILHAI
HHHHHHHHHHHHHHCCCEECCCHHHHHHHHEEECCCCEEEEEECCCCCCHHHHHHHHHHH
EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR
HHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCC
DAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTIEE
CHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCHHCCCCCCHHHCCEEEEECCHHH
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLSD
CCHHHHHHHHHHHCCCCHHHHHHHHHHHEEHCCCCCHHHHHHHHHHHHHCCCCCEEEEHH
ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA
HCCCCCCCCCCCEEEECCCCCCEEEEEEEEEEHHHHHHHHHHHHHCCCCEEEEHHHHHHH
INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT
HCCCCCCHHHHCCCEEEEEECHHHHHHHHCCCCHHHHHHHHCCCCEEEECCCCEEEEEEC
DGDKAQHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
CCHHHHHHHHHHHHHHHHEEEEEEECCEEEEEEECCEEEEECCCCCCCEEHHHHHHHHHH
KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQTPSAAAPEAPAAEQGE
HHHHHHHCCCCCCEEEEEECCCCCEEEEEHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA