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The map label for this gene is ydeZ [H]

Identifier: 238896601

GI number: 238896601

Start: 4582174

End: 4583172

Strand: Reverse

Name: ydeZ [H]

Synonym: KP1_4802

Alternate gene names: 238896601

Gene position: 4583172-4582174 (Counterclockwise)

Preceding gene: 238896602

Following gene: 238896600

Centisome position: 87.32

GC content: 62.86

Gene sequence:

>999_bases
ATGAAGCTGAAGCTTAACTGGGAAAGCGCGCTGCTGGCGTTGCTGATCGTGGAGATCCTGCTGTTCGGCGCGCTGAATCC
GCGCATGCTGGATCTCAATATGCTGCTCTTTAGCACCAGCGACTTTATCTGCATCGGCATCGTCGCGCTGCCGCTGACGC
TGGTGATCATCAGCGGCGGGATCGATATTTCGCTGGGCTCGACCATCGGCCTGTGCGCCATCGCCCTCGGGGTGATGACC
CAGGCGGGCTGGCCGCTGTGGCTCGCGGTATCGCTGACGTTGCTCTTGGGACTGCTGTGCGGGTTATTCAACGCCGCGCT
GATCCACTACACCGGCATCAGCCCGCTGGTGATCACGCTTGGTACGCTGTATCTGTACGGCGGCGGCGCGCTGCTGCTTT
CCGGGATGGCCGGCGCGACCGGTTACGAGGGGATTGGCGGTTTTCCCGATAGCTTCACCGCCTTCGCCAATTTAACCCTC
GCCGGACTGCCGCTGCCGCTGGTGCTGTTCGCGATTATCACCTTTTTCTTCTGGCTGCTGACCCATCGCGGGCGCTTTGG
CCGCCACCTCTTTTTACTCGGGCAAAACCCGCGCGCCGCGCGCTATGCCGCGCTGTCGGTGAACGGCATCCCGTACGTGC
TGTATGGCCTGGTGGGCGTCGCCTCGGCGGTCGCGGCGCTGGTGATGGTCTCCTATTTCGGCTCGGCACGTTCGGATTTA
GGCCGCGACCTGCTGATGCCTGCGCTGACCGCGGCGGTGCTCGGCGGGGCCAATATTTACGGCGGCTCGGGATCGATACT
GGGTACCGCGCTGGCGGCATTGCTGGTGGGGTATCTGCAACAGGGTTTACAGATGGTCGGCATCCCCAACCAGGTGTCGA
GCGCGCTGTCAGGGGCGCTGTTGGTTGTGGTGGTGATGGGGCGTTCGCTGAGCCTGCACCGTGAATGGGTGCGCGCGACC
TGGCGGCGTCTTTTCTCGCATAAAACAATCGGAGCATAA

Upstream 100 bases:

>100_bases
CCATCAGCGGGCGCTAAAGTACAGCCGTTTCCAGCCCGGTAACAAAGGGGGGAAACAGGTTGCCCGCTTTCCCGAACGCA
AAAGCAAAGAGGTGGCTTAA

Downstream 100 bases:

>100_bases
AATGAAATTAAAACTGATCGTGCTGGCGCTGGCGATGAGCGTGGTTACCGCGCAGGCGGCGGACCGCATCGCCTTTATTC
CTAAGCTGGTCGGCGTCGGC

Product: putative transport system permease component

Products: NA

Alternate protein names: AI-2 import system permease protein lsrD [H]

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MKLKLNWESALLALLIVEILLFGALNPRMLDLNMLLFSTSDFICIGIVALPLTLVIISGGIDISLGSTIGLCAIALGVMT
QAGWPLWLAVSLTLLLGLLCGLFNAALIHYTGISPLVITLGTLYLYGGGALLLSGMAGATGYEGIGGFPDSFTAFANLTL
AGLPLPLVLFAIITFFFWLLTHRGRFGRHLFLLGQNPRAARYAALSVNGIPYVLYGLVGVASAVAALVMVSYFGSARSDL
GRDLLMPALTAAVLGGANIYGGSGSILGTALAALLVGYLQQGLQMVGIPNQVSSALSGALLVVVVMGRSLSLHREWVRAT
WRRLFSHKTIGA

Sequences:

>Translated_332_residues
MKLKLNWESALLALLIVEILLFGALNPRMLDLNMLLFSTSDFICIGIVALPLTLVIISGGIDISLGSTIGLCAIALGVMT
QAGWPLWLAVSLTLLLGLLCGLFNAALIHYTGISPLVITLGTLYLYGGGALLLSGMAGATGYEGIGGFPDSFTAFANLTL
AGLPLPLVLFAIITFFFWLLTHRGRFGRHLFLLGQNPRAARYAALSVNGIPYVLYGLVGVASAVAALVMVSYFGSARSDL
GRDLLMPALTAAVLGGANIYGGSGSILGTALAALLVGYLQQGLQMVGIPNQVSSALSGALLVVVVMGRSLSLHREWVRAT
WRRLFSHKTIGA
>Mature_332_residues
MKLKLNWESALLALLIVEILLFGALNPRMLDLNMLLFSTSDFICIGIVALPLTLVIISGGIDISLGSTIGLCAIALGVMT
QAGWPLWLAVSLTLLLGLLCGLFNAALIHYTGISPLVITLGTLYLYGGGALLLSGMAGATGYEGIGGFPDSFTAFANLTL
AGLPLPLVLFAIITFFFWLLTHRGRFGRHLFLLGQNPRAARYAALSVNGIPYVLYGLVGVASAVAALVMVSYFGSARSDL
GRDLLMPALTAAVLGGANIYGGSGSILGTALAALLVGYLQQGLQMVGIPNQVSSALSGALLVVVVMGRSLSLHREWVRAT
WRRLFSHKTIGA

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787794, Length=323, Percent_Identity=70.5882352941177, Blast_Score=417, Evalue=1e-118,
Organism=Escherichia coli, GI1790524, Length=311, Percent_Identity=26.0450160771704, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI1790191, Length=290, Percent_Identity=29.3103448275862, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI1787793, Length=308, Percent_Identity=33.4415584415584, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1788896, Length=316, Percent_Identity=25.9493670886076, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1788471, Length=285, Percent_Identity=28.4210526315789, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI145693152, Length=263, Percent_Identity=30.0380228136882, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI145693214, Length=274, Percent_Identity=29.5620437956204, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI87082395, Length=269, Percent_Identity=27.1375464684015, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789992, Length=137, Percent_Identity=27.7372262773723, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34849; Mature: 34849

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKLNWESALLALLIVEILLFGALNPRMLDLNMLLFSTSDFICIGIVALPLTLVIISGG
CEEEECHHHHHHHHHHHHHHHHCCCCCCEEEHEEHHHCCCCHHHHHHHHHHHHHHHHCCC
IDISLGSTIGLCAIALGVMTQAGWPLWLAVSLTLLLGLLCGLFNAALIHYTGISPLVITL
CEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
GTLYLYGGGALLLSGMAGATGYEGIGGFPDSFTAFANLTLAGLPLPLVLFAIITFFFWLL
HHHHHHCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
THRGRFGRHLFLLGQNPRAARYAALSVNGIPYVLYGLVGVASAVAALVMVSYFGSARSDL
HHCCCCCCEEEEEECCCCCHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRDLLMPALTAAVLGGANIYGGSGSILGTALAALLVGYLQQGLQMVGIPNQVSSALSGAL
HHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHCHHCCCCCHHHHHHHHHHH
LVVVVMGRSLSLHREWVRATWRRLFSHKTIGA
HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKLKLNWESALLALLIVEILLFGALNPRMLDLNMLLFSTSDFICIGIVALPLTLVIISGG
CEEEECHHHHHHHHHHHHHHHHCCCCCCEEEHEEHHHCCCCHHHHHHHHHHHHHHHHCCC
IDISLGSTIGLCAIALGVMTQAGWPLWLAVSLTLLLGLLCGLFNAALIHYTGISPLVITL
CEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
GTLYLYGGGALLLSGMAGATGYEGIGGFPDSFTAFANLTLAGLPLPLVLFAIITFFFWLL
HHHHHHCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
THRGRFGRHLFLLGQNPRAARYAALSVNGIPYVLYGLVGVASAVAALVMVSYFGSARSDL
HHCCCCCCEEEEEECCCCCHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRDLLMPALTAAVLGGANIYGGSGSILGTALAALLVGYLQQGLQMVGIPNQVSSALSGAL
HHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHCHHCCCCCHHHHHHHHHHH
LVVVVMGRSLSLHREWVRATWRRLFSHKTIGA
HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA