Click here to switch to the map view.

The map label for this gene is yneA [H]

Identifier: 238896600

GI number: 238896600

Start: 4581171

End: 4582232

Strand: Reverse

Name: yneA [H]

Synonym: KP1_4801

Alternate gene names: 238896600

Gene position: 4582232-4581171 (Counterclockwise)

Preceding gene: 238896601

Following gene: 238896599

Centisome position: 87.31

GC content: 58.57

Gene sequence:

>1062_bases
GTGAATGGGTGCGCGCGACCTGGCGGCGTCTTTTCTCGCATAAAACAATCGGAGCATAAAATGAAATTAAAACTGATCGT
GCTGGCGCTGGCGATGAGCGTGGTTACCGCGCAGGCGGCGGACCGCATCGCCTTTATTCCTAAGCTGGTCGGCGTCGGCT
TCTTTACCAGCGGCGGCAACGGCGCGAAAGAGGCGGGGAAAACGCTGGGCGTGGATGTCACCTATGACGGTCCCACCGAG
CCCAGCGTCTCCGGCCAGGTGCAGCTTATCAACAACTTCGTCAACCAGGGCTACAACGCGATTATCGTTTCCGCTGTCTC
GCCGGACGGCCTGTGTCCGGCGCTGAAGCGGGCGATGCAGCGCGGGGTGAAAGTCCTGACCTGGGATTCCGATACCAGGC
CGGAGTGCCGCAGCATCTATATCAATCAGGGCACGCCGCAGCAGCTTGGCGGCCTGCTGGTCGAGATGGCGGAAAAGCAG
GTGACGAAGCCTACTGCCAAGGTAGCGTTTTTCTACTCCAGCCCGACGGTGACCGACCAGAACCAGTGGGTGAAGGAAGC
CAAAGCCAAAATCGAAAAAGAGCATCCGCAGTGGCAAATCGTCACCACCCAGTTTGGCTATAACGATGCCACCAAATCGC
TGCAAACCGCCGAGGGGATCTTAAAAGCGTATCCGGATCTCGACGCCATTATCGCGCCGGATGCCAATGCGCTGCCGGCG
GCGGCGCAGGCGGCAGAGAACCTCAAGCGTCAGGGCGTGGCGATTGTCGGCTTTAGTACGCCGAACGTGATGTGTCCGTA
CGTTGAGCGCGGCACGGTGAAAGCGTTCGGCCTGTGGGATGTGGTTCAGCAGGGCAAAATTGCGGTTAACGTCGCCGATC
GATTGCTGAAAAAGGGCGATCTTAACGTGGGCGACAGCGTTGAGGTGAAAGATATCGGCTCGCTGAAGGTCGAACCGAAC
AGCGTGCAGGGCTACAAGTATGAGGCGAAGGGCAACGGTATCGTGCTGCTGCCGGAGCGCGTGGTGTTCAGCAAAGAGAA
CATCAACAACTACGACTTCTGA

Upstream 100 bases:

>100_bases
CAGGGTTTACAGATGGTCGGCATCCCCAACCAGGTGTCGAGCGCGCTGTCAGGGGCGCTGTTGGTTGTGGTGGTGATGGG
GCGTTCGCTGAGCCTGCACC

Downstream 100 bases:

>100_bases
CGGAGGATGAGATGGCAGATTTAGACGATATCAAAGAGGGGAAGGACTTCGGTATTGACCGCCCGCAGCAGAATACGCTG
TATACCCTGAAAGGCTGCGG

Product: putative LacI-type transcriptional regulator

Products: NA

Alternate protein names: AI-2-binding protein lsrB [H]

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MNGCARPGGVFSRIKQSEHKMKLKLIVLALAMSVVTAQAADRIAFIPKLVGVGFFTSGGNGAKEAGKTLGVDVTYDGPTE
PSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTRPECRSIYINQGTPQQLGGLLVEMAEKQ
VTKPTAKVAFFYSSPTVTDQNQWVKEAKAKIEKEHPQWQIVTTQFGYNDATKSLQTAEGILKAYPDLDAIIAPDANALPA
AAQAAENLKRQGVAIVGFSTPNVMCPYVERGTVKAFGLWDVVQQGKIAVNVADRLLKKGDLNVGDSVEVKDIGSLKVEPN
SVQGYKYEAKGNGIVLLPERVVFSKENINNYDF

Sequences:

>Translated_353_residues
MNGCARPGGVFSRIKQSEHKMKLKLIVLALAMSVVTAQAADRIAFIPKLVGVGFFTSGGNGAKEAGKTLGVDVTYDGPTE
PSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTRPECRSIYINQGTPQQLGGLLVEMAEKQ
VTKPTAKVAFFYSSPTVTDQNQWVKEAKAKIEKEHPQWQIVTTQFGYNDATKSLQTAEGILKAYPDLDAIIAPDANALPA
AAQAAENLKRQGVAIVGFSTPNVMCPYVERGTVKAFGLWDVVQQGKIAVNVADRLLKKGDLNVGDSVEVKDIGSLKVEPN
SVQGYKYEAKGNGIVLLPERVVFSKENINNYDF
>Mature_353_residues
MNGCARPGGVFSRIKQSEHKMKLKLIVLALAMSVVTAQAADRIAFIPKLVGVGFFTSGGNGAKEAGKTLGVDVTYDGPTE
PSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTRPECRSIYINQGTPQQLGGLLVEMAEKQ
VTKPTAKVAFFYSSPTVTDQNQWVKEAKAKIEKEHPQWQIVTTQFGYNDATKSLQTAEGILKAYPDLDAIIAPDANALPA
AAQAAENLKRQGVAIVGFSTPNVMCPYVERGTVKAFGLWDVVQQGKIAVNVADRLLKKGDLNVGDSVEVKDIGSLKVEPN
SVQGYKYEAKGNGIVLLPERVVFSKENINNYDF

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the lsrC and lsrD permeases [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787795, Length=337, Percent_Identity=81.0089020771513, Blast_Score=540, Evalue=1e-155,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38090; Mature: 38090

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGCARPGGVFSRIKQSEHKMKLKLIVLALAMSVVTAQAADRIAFIPKLVGVGFFTSGGN
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCC
GAKEAGKTLGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQ
CHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHH
RGVKVLTWDSDTRPECRSIYINQGTPQQLGGLLVEMAEKQVTKPTAKVAFFYSSPTVTDQ
CCCEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCH
NQWVKEAKAKIEKEHPQWQIVTTQFGYNDATKSLQTAEGILKAYPDLDAIIAPDANALPA
HHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCH
AAQAAENLKRQGVAIVGFSTPNVMCPYVERGTVKAFGLWDVVQQGKIAVNVADRLLKKGD
HHHHHHHHHHCCEEEEEECCCCEECCCCCCCCEEEEEHHHHHHCCEEEEEHHHHHHHHCC
LNVGDSVEVKDIGSLKVEPNSVQGYKYEAKGNGIVLLPERVVFSKENINNYDF
CCCCCCEEEEECCCEEECCCCCCCEEEEECCCCEEEECCCEEEECCCCCCCCC
>Mature Secondary Structure
MNGCARPGGVFSRIKQSEHKMKLKLIVLALAMSVVTAQAADRIAFIPKLVGVGFFTSGGN
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCC
GAKEAGKTLGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQ
CHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHH
RGVKVLTWDSDTRPECRSIYINQGTPQQLGGLLVEMAEKQVTKPTAKVAFFYSSPTVTDQ
CCCEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCH
NQWVKEAKAKIEKEHPQWQIVTTQFGYNDATKSLQTAEGILKAYPDLDAIIAPDANALPA
HHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCH
AAQAAENLKRQGVAIVGFSTPNVMCPYVERGTVKAFGLWDVVQQGKIAVNVADRLLKKGD
HHHHHHHHHHCCEEEEEECCCCEECCCCCCCCEEEEEHHHHHHCCEEEEEHHHHHHHHCC
LNVGDSVEVKDIGSLKVEPNSVQGYKYEAKGNGIVLLPERVVFSKENINNYDF
CCCCCCEEEEECCCEEECCCCCCCEEEEECCCCEEEECCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA