Click here to switch to the map view.

The map label for this gene is ygiD [H]

Identifier: 238896546

GI number: 238896546

Start: 4525480

End: 4526271

Strand: Reverse

Name: ygiD [H]

Synonym: KP1_4734

Alternate gene names: 238896546

Gene position: 4526271-4525480 (Counterclockwise)

Preceding gene: 238896548

Following gene: 238896542

Centisome position: 86.24

GC content: 61.99

Gene sequence:

>792_bases
ATGTCCCGTACCCGAATGCCCGCGTTGTTTCTCGGCCATGGCAGCCCAATGAACGTGCTGGAAGACAACCGTTATACCCG
CGCCTGGGCTCAACTGGGCGAAACCCTGCCGCGTCCGAAAGCGATCGTGGTGGTCTCTGCGCACTGGTTTACGCGCGGTA
CGGGCGTAACGGCGATGGAGGCGCCGAAGACCATTCATGACTTCGGCGGTTTTCCGCAGGCGCTGTATGACACGCATTAT
CCGGCGCCGGGCTCTCCGGCGCTGGCGCAACGGCTGGTGGAGCTGCTCTCGCCGGTGCCGGTCACCCTCGATACAGAAGC
CTGGGGATTTGACCATGGCTCGTGGGGCGTGCTGATTAAAATGTATCCGCAGGCGGATATCCCGATGGTTCAGTTGAGCA
TCGACAGCACCAAACCGCCGGCCTGGCATCTCGAAATGGGGCGGAAACTGGCCTCGCTGCGTGATGAAGGCATTATGCTG
GTGGCCAGCGGCAACGTGGTGCATAACCTGCGCACCGCCCGCTGGCATGGCGAGAACACGCCGTACCCTTGGGCAGAGTC
CTTCAATAACTACGTGAAGGCGAATCTGCAATGGCAGGGGCTGGACGAGCAGCACCCGCTGGTTAACTACCTGGCACACG
AAGGGGGCTCGCTCTCCAACCCGACGGCGGAGCATTTCCTGCCGCTGCTGTATGTCCTGGGGACGTGGGATGGCGTTGAG
GCGATGACGATCCCGGTCGATGGCATCGAGATGGGCTCGCTGAGCATGCTGTCGGTGTTGGTTGGCGCCTGA

Upstream 100 bases:

>100_bases
TTCAAATTTTCTGACGATCATCATCATGGTTATCTGAGTTTATCCTGGCGCAAAAGCGCGTAATGTGAGCACATCACATT
GACACCCTAAGGATATCATC

Downstream 100 bases:

>100_bases
TGATAGCGCGCTCCGGCGGCATTTACCGTCGCCGGAGCGCGGCATTATTCGACGAAAATGTGCGGATAGAAGCGCGACAG
ATCCTGGGTGATCAGCGCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MSRTRMPALFLGHGSPMNVLEDNRYTRAWAQLGETLPRPKAIVVVSAHWFTRGTGVTAMEAPKTIHDFGGFPQALYDTHY
PAPGSPALAQRLVELLSPVPVTLDTEAWGFDHGSWGVLIKMYPQADIPMVQLSIDSTKPPAWHLEMGRKLASLRDEGIML
VASGNVVHNLRTARWHGENTPYPWAESFNNYVKANLQWQGLDEQHPLVNYLAHEGGSLSNPTAEHFLPLLYVLGTWDGVE
AMTIPVDGIEMGSLSMLSVLVGA

Sequences:

>Translated_263_residues
MSRTRMPALFLGHGSPMNVLEDNRYTRAWAQLGETLPRPKAIVVVSAHWFTRGTGVTAMEAPKTIHDFGGFPQALYDTHY
PAPGSPALAQRLVELLSPVPVTLDTEAWGFDHGSWGVLIKMYPQADIPMVQLSIDSTKPPAWHLEMGRKLASLRDEGIML
VASGNVVHNLRTARWHGENTPYPWAESFNNYVKANLQWQGLDEQHPLVNYLAHEGGSLSNPTAEHFLPLLYVLGTWDGVE
AMTIPVDGIEMGSLSMLSVLVGA
>Mature_262_residues
SRTRMPALFLGHGSPMNVLEDNRYTRAWAQLGETLPRPKAIVVVSAHWFTRGTGVTAMEAPKTIHDFGGFPQALYDTHYP
APGSPALAQRLVELLSPVPVTLDTEAWGFDHGSWGVLIKMYPQADIPMVQLSIDSTKPPAWHLEMGRKLASLRDEGIMLV
ASGNVVHNLRTARWHGENTPYPWAESFNNYVKANLQWQGLDEQHPLVNYLAHEGGSLSNPTAEHFLPLLYVLGTWDGVEA
MTIPVDGIEMGSLSMLSVLVGA

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=262, Percent_Identity=85.4961832061069, Blast_Score=467, Evalue=1e-133,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 28988; Mature: 28857

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRTRMPALFLGHGSPMNVLEDNRYTRAWAQLGETLPRPKAIVVVSAHWFTRGTGVTAME
CCCCCCCEEEEECCCCCCHHCCCCHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCEEEC
APKTIHDFGGFPQALYDTHYPAPGSPALAQRLVELLSPVPVTLDTEAWGFDHGSWGVLIK
CCCHHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEE
MYPQADIPMVQLSIDSTKPPAWHLEMGRKLASLRDEGIMLVASGNVVHNLRTARWHGENT
ECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCEEECCCCEEECCCCC
PYPWAESFNNYVKANLQWQGLDEQHPLVNYLAHEGGSLSNPTAEHFLPLLYVLGTWDGVE
CCCHHHHCCCEEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCE
AMTIPVDGIEMGSLSMLSVLVGA
EEEEECCCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
SRTRMPALFLGHGSPMNVLEDNRYTRAWAQLGETLPRPKAIVVVSAHWFTRGTGVTAME
CCCCCCEEEEECCCCCCHHCCCCHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCEEEC
APKTIHDFGGFPQALYDTHYPAPGSPALAQRLVELLSPVPVTLDTEAWGFDHGSWGVLIK
CCCHHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEE
MYPQADIPMVQLSIDSTKPPAWHLEMGRKLASLRDEGIMLVASGNVVHNLRTARWHGENT
ECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCEEECCCCEEECCCCC
PYPWAESFNNYVKANLQWQGLDEQHPLVNYLAHEGGSLSNPTAEHFLPLLYVLGTWDGVE
CCCHHHHCCCEEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCE
AMTIPVDGIEMGSLSMLSVLVGA
EEEEECCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]