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The map label for this gene is yqhC [H]

Identifier: 238896523

GI number: 238896523

Start: 4501740

End: 4502798

Strand: Reverse

Name: yqhC [H]

Synonym: KP1_4709

Alternate gene names: 238896523

Gene position: 4502798-4501740 (Counterclockwise)

Preceding gene: 238896526

Following gene: 238896520

Centisome position: 85.79

GC content: 54.77

Gene sequence:

>1059_bases
ATGATACCGCTGCCCGATGAAGGTTATTGTGGTCCTGGCGCCGTTGACCCTCAATGCACATTCCTGCCGATGTCTTGCCT
ATTTCTCCATATGGCTGGAGAATTTGTAGCGGCCTGCGCACAATGTACAGGTGAAGAAACATCGGGAGAGACGGTGGCAA
TGCAACACGCAGAGATATGTCGGACATTAACGCAGAAGATTAACCTGCTGAAAGATAAGCACGAAATGTTAAGTTCGTTG
CTGCCTGACGTCCGTTTGCTGTACGGAACGCAACCGGGGCCCCGGACGCCGGTGATGTATCAGCCGGGGATCGTTTTTCT
CTTTTCGGGCCATAAAATTGGTTATATCAATGAGCGGACTTTTCGCTACGATACAAACGAATATTTACTGCTGACCGTGC
CGCTACCTTTCGAGTGCGAAACCTTTGCTACCCCGGAGGTGCCCCTCGCCGGGATGCGCCTGAACGTCGATATCCTGCAA
CTGCAAGAGCTGCTGATGGATATTGGCGAAGATCCGCTGTTTCAGCCCGCGGTCGCCTCCAGCGGGATAAACTCCGCGGT
ACTCTCGGAGGATATTCTGTGCGCTGCCGAACGGCTGCTTGACGTGATGGAGCGGCCGCTGGACGCACGGATCCTTGGCA
AGCAAATCGTCCGCGAAATTCTGTATTATGTGCTGACGGGGCCCTGCGGCGGCGCGCTGTTGGCGCTGGTCAGCCGGCAG
ACCCACTTCAGCCTGATAAGTCGCGTGCTCAAGCATATCGAAAGCCAGTACACCGAAAACCTCAGCGTCGATCGGCTGGC
GGCGGAAGCGAATATGAGTGTGTCAGCGTTTCACCATAATTTTAAAGCGGTGACCAGCACTTCTCCTTTGCAGTATCTGA
AAAACTACCGTTTGCATAAAGCACGAATGCTGATGATCCATGACGGCATGAAGGCCAGCGCGGCGGCGATGCGCGTGGGA
TATGAAAGCCCTTCGCAGTTCAGCCGCGAGTTTAAGCGCTACTTCGGTTTGACGCCGGGAGAAGACGCCGCGCGTATTCG
CACGATGCAGGGGATGTAA

Upstream 100 bases:

>100_bases
CTTTTCAATCGCGCCTTTGCCAAACAGAATGCGGGTTGGGGTATGCAGGTCGAAATTATTCATTGCTTAAGTCCTCCAAA
GAGTAAAACCGTCGACAGGG

Downstream 100 bases:

>100_bases
TACCGGGAAAGGGCGGCCGGGCGGGCGCAGGCCCCCCGGCAGGTAAGCGTCAGGCGCTGCAATATTTCTTTTTAATGACC
ACGAACAGCGTGCCGAGCAG

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MIPLPDEGYCGPGAVDPQCTFLPMSCLFLHMAGEFVAACAQCTGEETSGETVAMQHAEICRTLTQKINLLKDKHEMLSSL
LPDVRLLYGTQPGPRTPVMYQPGIVFLFSGHKIGYINERTFRYDTNEYLLLTVPLPFECETFATPEVPLAGMRLNVDILQ
LQELLMDIGEDPLFQPAVASSGINSAVLSEDILCAAERLLDVMERPLDARILGKQIVREILYYVLTGPCGGALLALVSRQ
THFSLISRVLKHIESQYTENLSVDRLAAEANMSVSAFHHNFKAVTSTSPLQYLKNYRLHKARMLMIHDGMKASAAAMRVG
YESPSQFSREFKRYFGLTPGEDAARIRTMQGM

Sequences:

>Translated_352_residues
MIPLPDEGYCGPGAVDPQCTFLPMSCLFLHMAGEFVAACAQCTGEETSGETVAMQHAEICRTLTQKINLLKDKHEMLSSL
LPDVRLLYGTQPGPRTPVMYQPGIVFLFSGHKIGYINERTFRYDTNEYLLLTVPLPFECETFATPEVPLAGMRLNVDILQ
LQELLMDIGEDPLFQPAVASSGINSAVLSEDILCAAERLLDVMERPLDARILGKQIVREILYYVLTGPCGGALLALVSRQ
THFSLISRVLKHIESQYTENLSVDRLAAEANMSVSAFHHNFKAVTSTSPLQYLKNYRLHKARMLMIHDGMKASAAAMRVG
YESPSQFSREFKRYFGLTPGEDAARIRTMQGM
>Mature_352_residues
MIPLPDEGYCGPGAVDPQCTFLPMSCLFLHMAGEFVAACAQCTGEETSGETVAMQHAEICRTLTQKINLLKDKHEMLSSL
LPDVRLLYGTQPGPRTPVMYQPGIVFLFSGHKIGYINERTFRYDTNEYLLLTVPLPFECETFATPEVPLAGMRLNVDILQ
LQELLMDIGEDPLFQPAVASSGINSAVLSEDILCAAERLLDVMERPLDARILGKQIVREILYYVLTGPCGGALLALVSRQ
THFSLISRVLKHIESQYTENLSVDRLAAEANMSVSAFHHNFKAVTSTSPLQYLKNYRLHKARMLMIHDGMKASAAAMRVG
YESPSQFSREFKRYFGLTPGEDAARIRTMQGM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=313, Percent_Identity=81.7891373801917, Blast_Score=532, Evalue=1e-152,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 39175; Mature: 39175

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPLPDEGYCGPGAVDPQCTFLPMSCLFLHMAGEFVAACAQCTGEETSGETVAMQHAEIC
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHH
RTLTQKINLLKDKHEMLSSLLPDVRLLYGTQPGPRTPVMYQPGIVFLFSGHKIGYINERT
HHHHHHHHHHHHHHHHHHHHCCHHEEEECCCCCCCCCEEECCCEEEEECCCEEEEECCCE
FRYDTNEYLLLTVPLPFECETFATPEVPLAGMRLNVDILQLQELLMDIGEDPLFQPAVAS
EEECCCCEEEEEECCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHCCCCCCCCCHHHH
SGINSAVLSEDILCAAERLLDVMERPLDARILGKQIVREILYYVLTGPCGGALLALVSRQ
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
THFSLISRVLKHIESQYTENLSVDRLAAEANMSVSAFHHNFKAVTSTSPLQYLKNYRLHK
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHCCHHHHCCCCHHHHHHHCCHHH
ARMLMIHDGMKASAAAMRVGYESPSQFSREFKRYFGLTPGEDAARIRTMQGM
HEEEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MIPLPDEGYCGPGAVDPQCTFLPMSCLFLHMAGEFVAACAQCTGEETSGETVAMQHAEIC
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHH
RTLTQKINLLKDKHEMLSSLLPDVRLLYGTQPGPRTPVMYQPGIVFLFSGHKIGYINERT
HHHHHHHHHHHHHHHHHHHHCCHHEEEECCCCCCCCCEEECCCEEEEECCCEEEEECCCE
FRYDTNEYLLLTVPLPFECETFATPEVPLAGMRLNVDILQLQELLMDIGEDPLFQPAVAS
EEECCCCEEEEEECCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHCCCCCCCCCHHHH
SGINSAVLSEDILCAAERLLDVMERPLDARILGKQIVREILYYVLTGPCGGALLALVSRQ
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
THFSLISRVLKHIESQYTENLSVDRLAAEANMSVSAFHHNFKAVTSTSPLQYLKNYRLHK
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHCCHHHHCCCCHHHHHHHCCHHH
ARMLMIHDGMKASAAAMRVGYESPSQFSREFKRYFGLTPGEDAARIRTMQGM
HEEEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]