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The map label for this gene is ybaO [H]

Identifier: 238893397

GI number: 238893397

Start: 1238000

End: 1238458

Strand: Direct

Name: ybaO [H]

Synonym: KP1_1281

Alternate gene names: 238893397

Gene position: 1238000-1238458 (Clockwise)

Preceding gene: 238893395

Following gene: 238893398

Centisome position: 23.59

GC content: 55.12

Gene sequence:

>459_bases
ATGCTAGATAAAATTGACCGTAAGCTGCTGGCGCTACTGCAGGAAGATTGCACCCTCTCTTTGCAGGCGCTGGCCGATGC
CGTTAATCTGACCACCACGCCCTGCTGGAAACGCCTGAAACGGCTCGAAGATGAGGGTATTCTCCGCGGGCGCGTCGCCC
TGTTGGACGCGGAAAAGGTGGGGCTGGGGCTGACGGCGTTCGTCCTGATCAAGACCCAGCATCACAGCAGCGACTGGTAC
TGTCAGTTCGTGAGCGAAGTGACGCAGATGGCGGAAGTGCTCGGCTTCTGGCGGATGGCGGGGGAGTATGACTACCTGCT
ACGGGTGCAGGTGGCTGATATGAAACGCTATGACGACTTTTATAAACGTTTAGTGAACAGTGTGCCTGGTCTGTCGGATG
TCACTTCGAGTTTTGCCATGGAACAGATAAAATATACCACCGCCTTGCCTGTCGAATAA

Upstream 100 bases:

>100_bases
GTCATTTTGTGCCTAGCTTAGCGGAAAGCGCAGGAAAAATTGTTGCCATTTAACCTGTGGATTACCATTATGAGAGCAAA
ATTTTCTCTGAGGATGCCCA

Downstream 100 bases:

>100_bases
CGGTATTGCGCCGTAACCCATTACAAAATCAGGATTTTATTGCTTGCGATTATTTGCTCAACTCAGCTGGTACTTCCGCC
GGGAGTGGCGCCGCTATCTT

Product: putative LRP-like transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MLDKIDRKLLALLQEDCTLSLQALADAVNLTTTPCWKRLKRLEDEGILRGRVALLDAEKVGLGLTAFVLIKTQHHSSDWY
CQFVSEVTQMAEVLGFWRMAGEYDYLLRVQVADMKRYDDFYKRLVNSVPGLSDVTSSFAMEQIKYTTALPVE

Sequences:

>Translated_152_residues
MLDKIDRKLLALLQEDCTLSLQALADAVNLTTTPCWKRLKRLEDEGILRGRVALLDAEKVGLGLTAFVLIKTQHHSSDWY
CQFVSEVTQMAEVLGFWRMAGEYDYLLRVQVADMKRYDDFYKRLVNSVPGLSDVTSSFAMEQIKYTTALPVE
>Mature_152_residues
MLDKIDRKLLALLQEDCTLSLQALADAVNLTTTPCWKRLKRLEDEGILRGRVALLDAEKVGLGLTAFVLIKTQHHSSDWY
CQFVSEVTQMAEVLGFWRMAGEYDYLLRVQVADMKRYDDFYKRLVNSVPGLSDVTSSFAMEQIKYTTALPVE

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=152, Percent_Identity=88.8157894736842, Blast_Score=288, Evalue=1e-79,
Organism=Escherichia coli, GI1787116, Length=151, Percent_Identity=33.112582781457, Blast_Score=97, Evalue=5e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17354; Mature: 17354

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDKIDRKLLALLQEDCTLSLQALADAVNLTTTPCWKRLKRLEDEGILRGRVALLDAEKV
CCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHEEEEHHHH
GLGLTAFVLIKTQHHSSDWYCQFVSEVTQMAEVLGFWRMAGEYDYLLRVQVADMKRYDDF
CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHH
YKRLVNSVPGLSDVTSSFAMEQIKYTTALPVE
HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLDKIDRKLLALLQEDCTLSLQALADAVNLTTTPCWKRLKRLEDEGILRGRVALLDAEKV
CCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHEEEEHHHH
GLGLTAFVLIKTQHHSSDWYCQFVSEVTQMAEVLGFWRMAGEYDYLLRVQVADMKRYDDF
CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHH
YKRLVNSVPGLSDVTSSFAMEQIKYTTALPVE
HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]