Click here to switch to the map view.

The map label for this gene is ybaV [H]

Identifier: 238893391

GI number: 238893391

Start: 1232380

End: 1232748

Strand: Direct

Name: ybaV [H]

Synonym: KP1_1275

Alternate gene names: 238893391

Gene position: 1232380-1232748 (Clockwise)

Preceding gene: 238893390

Following gene: 238893392

Centisome position: 23.48

GC content: 58.54

Gene sequence:

>369_bases
ATGAAATATGGAATAAAAGCACTGATGGCCGCGGGCGTTCTGGTTTTTGCGGTAGGGGTACAGGGGGCGCTGGCGGCACC
CGCCAGCGGCAAAGCGGCGGTGAATAAAGAAAATGTGCAGGCTTCCTCTTCGGCGAAGGCGGAAGCGGTGCCCGGCGAGT
CTGACATCGGGGCGACAAAGGTCAGCATTAACCGCGCCAGCGCCGAACAGCTGGCGCAGGCGTTGAATGGCGTAGGATTG
AAAAAAGCCCAGGCTATTGTCAGCTACCGCGAAGAGTACGGGCCGTTCAAAACCCTCGATGATCTGAAGCAGGTCCCGGG
AATGGGGAGCGCGTTGGTGGAGCGCAATTTAGCCCATCTGACGCTGTAA

Upstream 100 bases:

>100_bases
CCGCTTTCGCGGCCCTTTCCATTTCTGTGATTTGCCTTTTGTCGACCATCCGCACTGACGCTATCGTGACCTTGCTGTCT
ACACACAAGGAGATATCAGC

Downstream 100 bases:

>100_bases
ATTTTATGCCAGACCTTGCACAGCGGTGATTTTTTGCCAGGATAAAGAGGTTGCATCAAGTGGTGTGACCTCTTACCTCA
TAAACAACAATAACAGAAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MKYGIKALMAAGVLVFAVGVQGALAAPASGKAAVNKENVQASSSAKAEAVPGESDIGATKVSINRASAEQLAQALNGVGL
KKAQAIVSYREEYGPFKTLDDLKQVPGMGSALVERNLAHLTL

Sequences:

>Translated_122_residues
MKYGIKALMAAGVLVFAVGVQGALAAPASGKAAVNKENVQASSSAKAEAVPGESDIGATKVSINRASAEQLAQALNGVGL
KKAQAIVSYREEYGPFKTLDDLKQVPGMGSALVERNLAHLTL
>Mature_122_residues
MKYGIKALMAAGVLVFAVGVQGALAAPASGKAAVNKENVQASSSAKAEAVPGESDIGATKVSINRASAEQLAQALNGVGL
KKAQAIVSYREEYGPFKTLDDLKQVPGMGSALVERNLAHLTL

Specific function: Unknown

COG id: COG1555

COG function: function code L; DNA uptake protein and related DNA-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HhH domains [H]

Homologues:

Organism=Escherichia coli, GI1786646, Length=123, Percent_Identity=60.1626016260163, Blast_Score=133, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004509
- InterPro:   IPR003583 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12466; Mature: 12466

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYGIKALMAAGVLVFAVGVQGALAAPASGKAAVNKENVQASSSAKAEAVPGESDIGATK
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
VSINRASAEQLAQALNGVGLKKAQAIVSYREEYGPFKTLDDLKQVPGMGSALVERNLAHL
EECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHH
TL
CC
>Mature Secondary Structure
MKYGIKALMAAGVLVFAVGVQGALAAPASGKAAVNKENVQASSSAKAEAVPGESDIGATK
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
VSINRASAEQLAQALNGVGLKKAQAIVSYREEYGPFKTLDDLKQVPGMGSALVERNLAHL
EECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHH
TL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]