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The map label for this gene is ycdL [C]

Identifier: 238893300

GI number: 238893300

Start: 1144063

End: 1144623

Strand: Direct

Name: ycdL [C]

Synonym: KP1_1177

Alternate gene names: 238893300

Gene position: 1144063-1144623 (Clockwise)

Preceding gene: 238893296

Following gene: 238893301

Centisome position: 21.8

GC content: 59.54

Gene sequence:

>561_bases
TTGGCTGAAGGTTCGTGGGAGAGAACAATGACGGCTCAACGGGTAGTGATGGTCGTGGATATGCAAAACGGCGTGTTCGC
CACGCCGCGTCTGGCGCGCGAGCGCTGCGTCGCGCAAATTAATCGTCTGGTGCGCGCGGCGGACAAGGTTATTTTCATTC
AGCATGATGAAGCCGGCGGCCTCGAAGCCGGCAGCGAAGGCTTCGCCCTGCTTCCTGAGCTGGAGCAGCCGGCTGGCGCG
CTGTATGTCACCAAAACCGCCTGCGATGCCTTCTATCACACCTCGCTGGCGCAGGTGCTGGACGAACACGACATTCAGCA
GTTCGTCATCTGCGGCTGCGCCACCGACTACTGCCTCGATACCACCATTAAAAATGGCGCCAGCCGCGGGTACGGTATTG
TTATCGCGGAAGATGCCCACACCACCGCCGACCGCCCCGCCGCGCAGGCCGCGATGCTTATCGCCCACTACAATGAGGTG
TGGCGTACGCTGACCATTCCTGGCAATCCTTTACAGGTGAAACCCACAGAAACAATTCTGCACGCATGGCAGCAGAACTA
A

Upstream 100 bases:

>100_bases
GATTCACGACTTTCCTGCAGGAAAAAGGTAACGGTGCGTAAAAAAGACTTTTTTACGCTTTCGGATACCGGCTTTTTTCG
CCGGCGCGTATGATGACCGT

Downstream 100 bases:

>100_bases
GCTGTTGATATCCGGTCTTATCATTCGTCTGTCCCGCGAGGGCTCATCCACGCGGCGGCCGACGTATGCGTCGTACACAG
CAATAGCAGAACGATAAGAA

Product: hypothetical isochorismatase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 185

Protein sequence:

>186_residues
MAEGSWERTMTAQRVVMVVDMQNGVFATPRLARERCVAQINRLVRAADKVIFIQHDEAGGLEAGSEGFALLPELEQPAGA
LYVTKTACDAFYHTSLAQVLDEHDIQQFVICGCATDYCLDTTIKNGASRGYGIVIAEDAHTTADRPAAQAAMLIAHYNEV
WRTLTIPGNPLQVKPTETILHAWQQN

Sequences:

>Translated_186_residues
MAEGSWERTMTAQRVVMVVDMQNGVFATPRLARERCVAQINRLVRAADKVIFIQHDEAGGLEAGSEGFALLPELEQPAGA
LYVTKTACDAFYHTSLAQVLDEHDIQQFVICGCATDYCLDTTIKNGASRGYGIVIAEDAHTTADRPAAQAAMLIAHYNEV
WRTLTIPGNPLQVKPTETILHAWQQN
>Mature_185_residues
AEGSWERTMTAQRVVMVVDMQNGVFATPRLARERCVAQINRLVRAADKVIFIQHDEAGGLEAGSEGFALLPELEQPAGAL
YVTKTACDAFYHTSLAQVLDEHDIQQFVICGCATDYCLDTTIKNGASRGYGIVIAEDAHTTADRPAAQAAMLIAHYNEVW
RTLTIPGNPLQVKPTETILHAWQQN

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isochorismatase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 20414; Mature: 20283

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEGSWERTMTAQRVVMVVDMQNGVFATPRLARERCVAQINRLVRAADKVIFIQHDEAGG
CCCCCCHHHHHHCEEEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCC
LEAGSEGFALLPELEQPAGALYVTKTACDAFYHTSLAQVLDEHDIQQFVICGCATDYCLD
CCCCCCCCEECCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHH
TTIKNGASRGYGIVIAEDAHTTADRPAAQAAMLIAHYNEVWRTLTIPGNPLQVKPTETIL
HHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHEEEECCCCCEEECHHHHHH
HAWQQN
HHHCCC
>Mature Secondary Structure 
AEGSWERTMTAQRVVMVVDMQNGVFATPRLARERCVAQINRLVRAADKVIFIQHDEAGG
CCCCCHHHHHHCEEEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCC
LEAGSEGFALLPELEQPAGALYVTKTACDAFYHTSLAQVLDEHDIQQFVICGCATDYCLD
CCCCCCCCEECCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHH
TTIKNGASRGYGIVIAEDAHTTADRPAAQAAMLIAHYNEVWRTLTIPGNPLQVKPTETIL
HHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHEEEECCCCCEEECHHHHHH
HAWQQN
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA