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The map label for this gene is yjjV [H]

Identifier: 238892966

GI number: 238892966

Start: 772360

End: 773154

Strand: Direct

Name: yjjV [H]

Synonym: KP1_0793

Alternate gene names: 238892966

Gene position: 772360-773154 (Clockwise)

Preceding gene: 238892965

Following gene: 238892967

Centisome position: 14.72

GC content: 60.38

Gene sequence:

>795_bases
GTGACGCACCGTTTTATCGATACCCACTGTCACTTTGATTTTCCCCCCTTCGCGGCAGATGAGGTCGCCAGCCTGGCGCG
TGCGGCGCAGGCCGGCGTCGGGCGAATTATCGTTCCAGCCATCTCTGCTGAGCGTTTTAGCCGCGTGCTGGCGCTGGCAG
CTCAGCACGAAGCGCTGTACGCCGCGCTGGGTATGCATCCGATCGTCATCGAAGAGCATACTGATGAGGGACTGGCGCAG
CTGGAAGCCTTGATGGCGCAGCGGCCGCCTAAACTGGTGGCGGTGGGAGAGATTGGCCTCGATCTTTATCGCGACGATCC
GCAGTTTGATCGTCAGCAGGCGCTGCTGGAAGCGCAGCTGAGGCTGGCGAAGCGTTACGATCTGCCGGTGATCCTCCACT
CCAGACGCACCCACGATAAGCTGGCGATGCTGCTGAAAAAACATGCCCTGCCGCGTACCGGAGTCATCCATGGCTTTGCC
GGCAGCCTGCAGCAGGCCGAGCGCTTCGTTCAGCTTGGCTATATGATCGGCGTTGGCGGCACCATTACCTATCCCCGCGC
CAGTAAAACCCGTGAAGTGATGGCGCGTCTGCCGCTTTCCGCTCTGCTGCTGGAGACCGATGCGCCGGATATGCCGCTAA
ATGGCTTTCAGGGACAGCCCAATCGACCGGAACAAGCTGCACGGGTATTTGAGGCGCTGTGTGAACTGCGTCCGGAGTCG
CCGGCAGCCATAGAAGAAGGGATCATGCACAATACGCTCGCCTTGTTTTCCCTTCCCCCGGTCTCTGTATGGTGA

Upstream 100 bases:

>100_bases
TGGTGGTGCCGCCGGTGCCGGTGGCCAATGAAGCGCCCCAGGCGACCATCATTCCTGCGCCCCAGGCGAATGACCCCAGT
TTTGATCATGAGGATCTGGC

Downstream 100 bases:

>100_bases
TCGATTTCTCATAATTGTCCATCCATATCATTGATTTGCTTAAAATGTGTGAAGCCAGACGGGCAGGATAGTTTCAGGCC
GATATAATCACGCGGTTAGT

Product: putative hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MTHRFIDTHCHFDFPPFAADEVASLARAAQAGVGRIIVPAISAERFSRVLALAAQHEALYAALGMHPIVIEEHTDEGLAQ
LEALMAQRPPKLVAVGEIGLDLYRDDPQFDRQQALLEAQLRLAKRYDLPVILHSRRTHDKLAMLLKKHALPRTGVIHGFA
GSLQQAERFVQLGYMIGVGGTITYPRASKTREVMARLPLSALLLETDAPDMPLNGFQGQPNRPEQAARVFEALCELRPES
PAAIEEGIMHNTLALFSLPPVSVW

Sequences:

>Translated_264_residues
MTHRFIDTHCHFDFPPFAADEVASLARAAQAGVGRIIVPAISAERFSRVLALAAQHEALYAALGMHPIVIEEHTDEGLAQ
LEALMAQRPPKLVAVGEIGLDLYRDDPQFDRQQALLEAQLRLAKRYDLPVILHSRRTHDKLAMLLKKHALPRTGVIHGFA
GSLQQAERFVQLGYMIGVGGTITYPRASKTREVMARLPLSALLLETDAPDMPLNGFQGQPNRPEQAARVFEALCELRPES
PAAIEEGIMHNTLALFSLPPVSVW
>Mature_263_residues
THRFIDTHCHFDFPPFAADEVASLARAAQAGVGRIIVPAISAERFSRVLALAAQHEALYAALGMHPIVIEEHTDEGLAQL
EALMAQRPPKLVAVGEIGLDLYRDDPQFDRQQALLEAQLRLAKRYDLPVILHSRRTHDKLAMLLKKHALPRTGVIHGFAG
SLQQAERFVQLGYMIGVGGTITYPRASKTREVMARLPLSALLLETDAPDMPLNGFQGQPNRPEQAARVFEALCELRPESP
AAIEEGIMHNTLALFSLPPVSVW

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI14042943, Length=262, Percent_Identity=25.5725190839695, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI225903424, Length=220, Percent_Identity=29.5454545454545, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI110349730, Length=267, Percent_Identity=27.7153558052434, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI225903439, Length=237, Percent_Identity=26.5822784810127, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI226061853, Length=272, Percent_Identity=27.5735294117647, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI110349734, Length=267, Percent_Identity=27.7153558052434, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI226061595, Length=224, Percent_Identity=28.5714285714286, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI226061614, Length=254, Percent_Identity=26.3779527559055, Blast_Score=73, Evalue=2e-13,
Organism=Escherichia coli, GI87082439, Length=259, Percent_Identity=73.7451737451737, Blast_Score=399, Evalue=1e-112,
Organism=Escherichia coli, GI48994985, Length=252, Percent_Identity=28.1746031746032, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787342, Length=259, Percent_Identity=27.027027027027, Blast_Score=94, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17559024, Length=215, Percent_Identity=30.2325581395349, Blast_Score=100, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI71980746, Length=227, Percent_Identity=25.9911894273128, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI221330018, Length=196, Percent_Identity=33.1632653061224, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24586117, Length=196, Percent_Identity=33.1632653061224, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24648690, Length=221, Percent_Identity=28.5067873303167, Blast_Score=79, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29142; Mature: 29011

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: PS01137 TATD_1 ; PS01090 TATD_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHRFIDTHCHFDFPPFAADEVASLARAAQAGVGRIIVPAISAERFSRVLALAAQHEALY
CCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHH
AALGMHPIVIEEHTDEGLAQLEALMAQRPPKLVAVGEIGLDLYRDDPQFDRQQALLEAQL
HHHCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH
RLAKRYDLPVILHSRRTHDKLAMLLKKHALPRTGVIHGFAGSLQQAERFVQLGYMIGVGG
HHHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCC
TITYPRASKTREVMARLPLSALLLETDAPDMPLNGFQGQPNRPEQAARVFEALCELRPES
EEECCCCHHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
PAAIEEGIMHNTLALFSLPPVSVW
CHHHHHHHHHHHHHHEECCCCCCC
>Mature Secondary Structure 
THRFIDTHCHFDFPPFAADEVASLARAAQAGVGRIIVPAISAERFSRVLALAAQHEALY
CCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHH
AALGMHPIVIEEHTDEGLAQLEALMAQRPPKLVAVGEIGLDLYRDDPQFDRQQALLEAQL
HHHCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH
RLAKRYDLPVILHSRRTHDKLAMLLKKHALPRTGVIHGFAGSLQQAERFVQLGYMIGVGG
HHHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCC
TITYPRASKTREVMARLPLSALLLETDAPDMPLNGFQGQPNRPEQAARVFEALCELRPES
EEECCCCHHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
PAAIEEGIMHNTLALFSLPPVSVW
CHHHHHHHHHHHHHHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]