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The map label for this gene is rbsC [H]

Identifier: 238892885

GI number: 238892885

Start: 697093

End: 698049

Strand: Direct

Name: rbsC [H]

Synonym: KP1_0705

Alternate gene names: 238892885

Gene position: 697093-698049 (Clockwise)

Preceding gene: 238892884

Following gene: 238892887

Centisome position: 13.28

GC content: 58.52

Gene sequence:

>957_bases
ATGAAAAAATCGTGGCGCAACAACGTTGAGTTTTACCTGATCGGCCTGCTGCTGCTGATGGTTATCGCCTTTAGCATCGC
CATGCCAAACATCTTCTGGTCTGTCAGCAATTTCCAGTCGATTGCCTCGCAAATGCCGGTGCTGGGGATCCTGGCGCTGG
CGATGGCCATGACTATGCTTTGCGGCGGCATTAATTTGTCAATTATCGCGACGGCTAACGCCTGCTCGCTGGTGATGGCC
TGGGTGGCGACGAGCTATCCGCCTGGGGGCGCTACCGCGCTGGCGACGCTGCTGGCCGGCGGAGGGGCGGCGATGATCAT
TGGCCTGTGCAACGGGATATTGATCGCCGGGATCCGCGTTTCGCCGATCCTGGCTACCCTTGGCATGATGACCCTGCTCA
AAGGGATAAATATTCTGATCACCGGCGGCAGCGCCATCGCTAACTATCCGCAGTGGGTGCTGTGGCTGAATCACGCCCAG
TGGTTCGGTATTCCGCTGCCAATGTGGCTTTTTGCGGTGGTGGCGGCCGGGCTGTGGGTGCTGCTGGAGAAAAGCCCGCT
GGGTCGGGCGATCATGTTGATCGGATCCAACGAACGGGCGACCCATTATTCCGGGATCAATACCCGGCGGGTGTTGATGT
GGGTATATGTCATCTCGGCCCTGCTCTGCGCGGTGGCTGCGTTTCTGATGATGTCGAAGCTGAACTCAGCCAAAGCATCT
TATGGGGAATCGTATTTGCTGGTGTCGATCCTCGCGGCGGTGCTTGGCGGCGTGAATCCGGATGGCGGTAGCGGGCGCAT
CGTTGGGATGGTGCTCGCGCTGTTCCTGCTGCAGATTATTGAGAGTGGGTTCAATATCCTCGGTATCAGCCCCTATCTGA
CGATGGCGCTGTGGGGCGTATTGCTGCTGTGCTTTATCCAGGCGCGAGGCATGCTGGGACTGGAGAGAGCCGGGTAA

Upstream 100 bases:

>100_bases
TAGGGGTCTCCTCCTACTGGCAGACCCTGATCACTGGGGCGATCATCGTCGTCAGCATCAGCGTAACGGCATGGAGCCAG
CATCAGAACCGGAGCTTGTT

Downstream 100 bases:

>100_bases
ATGACCCGTCCTCGGGGGCGAAGACGGGATAGCCAGTTATTCGCTACGCAAATGCACCGCCAGGCCGCTTTGCCCTGGCG
CCAGCTCCGGGCGCAGCGTC

Product: ribose high-affinity ABC transport system permease component

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MKKSWRNNVEFYLIGLLLLMVIAFSIAMPNIFWSVSNFQSIASQMPVLGILALAMAMTMLCGGINLSIIATANACSLVMA
WVATSYPPGGATALATLLAGGGAAMIIGLCNGILIAGIRVSPILATLGMMTLLKGINILITGGSAIANYPQWVLWLNHAQ
WFGIPLPMWLFAVVAAGLWVLLEKSPLGRAIMLIGSNERATHYSGINTRRVLMWVYVISALLCAVAAFLMMSKLNSAKAS
YGESYLLVSILAAVLGGVNPDGGSGRIVGMVLALFLLQIIESGFNILGISPYLTMALWGVLLLCFIQARGMLGLERAG

Sequences:

>Translated_318_residues
MKKSWRNNVEFYLIGLLLLMVIAFSIAMPNIFWSVSNFQSIASQMPVLGILALAMAMTMLCGGINLSIIATANACSLVMA
WVATSYPPGGATALATLLAGGGAAMIIGLCNGILIAGIRVSPILATLGMMTLLKGINILITGGSAIANYPQWVLWLNHAQ
WFGIPLPMWLFAVVAAGLWVLLEKSPLGRAIMLIGSNERATHYSGINTRRVLMWVYVISALLCAVAAFLMMSKLNSAKAS
YGESYLLVSILAAVLGGVNPDGGSGRIVGMVLALFLLQIIESGFNILGISPYLTMALWGVLLLCFIQARGMLGLERAG
>Mature_318_residues
MKKSWRNNVEFYLIGLLLLMVIAFSIAMPNIFWSVSNFQSIASQMPVLGILALAMAMTMLCGGINLSIIATANACSLVMA
WVATSYPPGGATALATLLAGGGAAMIIGLCNGILIAGIRVSPILATLGMMTLLKGINILITGGSAIANYPQWVLWLNHAQ
WFGIPLPMWLFAVVAAGLWVLLEKSPLGRAIMLIGSNERATHYSGINTRRVLMWVYVISALLCAVAAFLMMSKLNSAKAS
YGESYLLVSILAAVLGGVNPDGGSGRIVGMVLALFLLQIIESGFNILGISPYLTMALWGVLLLCFIQARGMLGLERAG

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=295, Percent_Identity=33.5593220338983, Blast_Score=134, Evalue=5e-33,
Organism=Escherichia coli, GI1787794, Length=312, Percent_Identity=31.7307692307692, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI145693152, Length=285, Percent_Identity=30.1754385964912, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1790524, Length=300, Percent_Identity=26.3333333333333, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1788896, Length=299, Percent_Identity=28.0936454849498, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI145693214, Length=248, Percent_Identity=30.241935483871, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI87082395, Length=289, Percent_Identity=26.643598615917, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787793, Length=287, Percent_Identity=26.8292682926829, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789992, Length=120, Percent_Identity=30.8333333333333, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788471, Length=321, Percent_Identity=30.5295950155763, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33741; Mature: 33741

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
6.0 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSWRNNVEFYLIGLLLLMVIAFSIAMPNIFWSVSNFQSIASQMPVLGILALAMAMTML
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
CGGINLSIIATANACSLVMAWVATSYPPGGATALATLLAGGGAAMIIGLCNGILIAGIRV
HCCCCEEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHH
SPILATLGMMTLLKGINILITGGSAIANYPQWVLWLNHAQWFGIPLPMWLFAVVAAGLWV
HHHHHHHHHHHHHCCCEEEEECCHHHHCCCHHEEEECCCCCCCCCHHHHHHHHHHHHHHH
LLEKSPLGRAIMLIGSNERATHYSGINTRRVLMWVYVISALLCAVAAFLMMSKLNSAKAS
HHCCCCCCCEEEEEECCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YGESYLLVSILAAVLGGVNPDGGSGRIVGMVLALFLLQIIESGFNILGISPYLTMALWGV
CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHH
LLLCFIQARGMLGLERAG
HHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKKSWRNNVEFYLIGLLLLMVIAFSIAMPNIFWSVSNFQSIASQMPVLGILALAMAMTML
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
CGGINLSIIATANACSLVMAWVATSYPPGGATALATLLAGGGAAMIIGLCNGILIAGIRV
HCCCCEEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHH
SPILATLGMMTLLKGINILITGGSAIANYPQWVLWLNHAQWFGIPLPMWLFAVVAAGLWV
HHHHHHHHHHHHHCCCEEEEECCHHHHCCCHHEEEECCCCCCCCCHHHHHHHHHHHHHHH
LLEKSPLGRAIMLIGSNERATHYSGINTRRVLMWVYVISALLCAVAAFLMMSKLNSAKAS
HHCCCCCCCEEEEEECCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YGESYLLVSILAAVLGGVNPDGGSGRIVGMVLALFLLQIIESGFNILGISPYLTMALWGV
CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHH
LLLCFIQARGMLGLERAG
HHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]