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The map label for this gene is rbsC [H]

Identifier: 238892884

GI number: 238892884

Start: 696125

End: 697096

Strand: Direct

Name: rbsC [H]

Synonym: KP1_0704

Alternate gene names: 238892884

Gene position: 696125-697096 (Clockwise)

Preceding gene: 238892883

Following gene: 238892885

Centisome position: 13.26

GC content: 56.69

Gene sequence:

>972_bases
ATGGCTAATCTGTTGAAACGACATGAATTCTGGTTAGGCATGTTCATTATTGCGCTGTGCCTGCTGCTGGGCTGGCGCAG
TGAGGAATTTTTCACTTTCGGCAATCTTTACGACCTCGCTAATAACTATGCGATGCTGACCATTCTCGCCTGTGGTCTGT
TCGTGGTGCTGATCGCCGGCGGGATTGATATCTCCTTCCCGGCTATGACCATTATCGCCCAGTACGGCATGGTGGTGATG
CTGCAAAAAGTAGGCGGCAACTTCGCGGTGGCTTTTGTGCTTGCCGGCGGCATCGGCGTGCTGCTGGGGCTGGTGAACGC
GCTGTTGGTTAATCGTCTGCGGGTCCCCTCGATCATTATCACCATTTCTACGCTCAACATTTTCTACGGTTTGCTGCTGT
GGTTAAGCAAAGGTGTCTGGCTCTACGACTTCCCTCCGTGGTTTGAAAAGGGGGTTATGCTGTTCAAATATACCGATGCC
GATGGTTACGATTACGGCCTGGGGCTGCCGCTGCTGACGATGATCGCCGTGGTGCTGTTGACCGCGTTTATCATGAATTT
CACCACCGTTGGCCGCAAGATCTATGCCATGGGCGGCAACCGGGAATCCGCCAGCCGCGTCGGCTTCAGCGTGCTCCGCC
TGCAGTTGTTCGTTTATGGCTATATGGGGCTAATGTCGGGGGCCGCAGGTGTCGTGCAGGCGTGGACAGTGATGACCGTT
GCGCCGGATTCACTGCTGGGCTATGAGCTGACGGTGCTGGCGGCGGTGGTGCTGGGCGGCACCAGCCTGATTGGCGGGCG
CGGAACTCTCACCGGTACGCTGCTGGGGGTGATTTTACTGGCGGTGATGCAGAACGGCCTGAACCTGCTAGGGGTCTCCT
CCTACTGGCAGACCCTGATCACTGGGGCGATCATCGTCGTCAGCATCAGCGTAACGGCATGGAGCCAGCATCAGAACCGG
AGCTTGTTATGA

Upstream 100 bases:

>100_bases
TGGTACCAGAGTCATCGCATCCTGGTGATGAAGCAGGGCGAGTTGACCCATAGCTTCCTGCCGGACAGCAGTACCCAGCA
GCAGATAGCGGAGGTGGTCA

Downstream 100 bases:

>100_bases
AAAAATCGTGGCGCAACAACGTTGAGTTTTACCTGATCGGCCTGCTGCTGCTGATGGTTATCGCCTTTAGCATCGCCATG
CCAAACATCTTCTGGTCTGT

Product: ribose high-affinity ABC transport system permease component

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MANLLKRHEFWLGMFIIALCLLLGWRSEEFFTFGNLYDLANNYAMLTILACGLFVVLIAGGIDISFPAMTIIAQYGMVVM
LQKVGGNFAVAFVLAGGIGVLLGLVNALLVNRLRVPSIIITISTLNIFYGLLLWLSKGVWLYDFPPWFEKGVMLFKYTDA
DGYDYGLGLPLLTMIAVVLLTAFIMNFTTVGRKIYAMGGNRESASRVGFSVLRLQLFVYGYMGLMSGAAGVVQAWTVMTV
APDSLLGYELTVLAAVVLGGTSLIGGRGTLTGTLLGVILLAVMQNGLNLLGVSSYWQTLITGAIIVVSISVTAWSQHQNR
SLL

Sequences:

>Translated_323_residues
MANLLKRHEFWLGMFIIALCLLLGWRSEEFFTFGNLYDLANNYAMLTILACGLFVVLIAGGIDISFPAMTIIAQYGMVVM
LQKVGGNFAVAFVLAGGIGVLLGLVNALLVNRLRVPSIIITISTLNIFYGLLLWLSKGVWLYDFPPWFEKGVMLFKYTDA
DGYDYGLGLPLLTMIAVVLLTAFIMNFTTVGRKIYAMGGNRESASRVGFSVLRLQLFVYGYMGLMSGAAGVVQAWTVMTV
APDSLLGYELTVLAAVVLGGTSLIGGRGTLTGTLLGVILLAVMQNGLNLLGVSSYWQTLITGAIIVVSISVTAWSQHQNR
SLL
>Mature_322_residues
ANLLKRHEFWLGMFIIALCLLLGWRSEEFFTFGNLYDLANNYAMLTILACGLFVVLIAGGIDISFPAMTIIAQYGMVVML
QKVGGNFAVAFVLAGGIGVLLGLVNALLVNRLRVPSIIITISTLNIFYGLLLWLSKGVWLYDFPPWFEKGVMLFKYTDAD
GYDYGLGLPLLTMIAVVLLTAFIMNFTTVGRKIYAMGGNRESASRVGFSVLRLQLFVYGYMGLMSGAAGVVQAWTVMTVA
PDSLLGYELTVLAAVVLGGTSLIGGRGTLTGTLLGVILLAVMQNGLNLLGVSSYWQTLITGAIIVVSISVTAWSQHQNRS
LL

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=297, Percent_Identity=32.3232323232323, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI145693152, Length=299, Percent_Identity=29.7658862876254, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1788896, Length=317, Percent_Identity=29.6529968454259, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1790524, Length=304, Percent_Identity=30.2631578947368, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI87082395, Length=297, Percent_Identity=30.6397306397306, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1789992, Length=137, Percent_Identity=34.3065693430657, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787794, Length=288, Percent_Identity=29.1666666666667, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787793, Length=284, Percent_Identity=28.169014084507, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788471, Length=242, Percent_Identity=31.8181818181818, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI145693214, Length=267, Percent_Identity=31.0861423220974, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34968; Mature: 34837

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANLLKRHEFWLGMFIIALCLLLGWRSEEFFTFGNLYDLANNYAMLTILACGLFVVLIAG
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHHHCCHHHHHHHHHHHHHHHHHC
GIDISFPAMTIIAQYGMVVMLQKVGGNFAVAFVLAGGIGVLLGLVNALLVNRLRVPSIII
CCCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
TISTLNIFYGLLLWLSKGVWLYDFPPWFEKGVMLFKYTDADGYDYGLGLPLLTMIAVVLL
EHHHHHHHHHHHHHHHCCCEEEECCCHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHH
TAFIMNFTTVGRKIYAMGGNRESASRVGFSVLRLQLFVYGYMGLMSGAAGVVQAWTVMTV
HHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEE
APDSLLGYELTVLAAVVLGGTSLIGGRGTLTGTLLGVILLAVMQNGLNLLGVSSYWQTLI
CCCHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHH
TGAIIVVSISVTAWSQHQNRSLL
HHHHHEEEEEHHEECCCCCCCCC
>Mature Secondary Structure 
ANLLKRHEFWLGMFIIALCLLLGWRSEEFFTFGNLYDLANNYAMLTILACGLFVVLIAG
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHHHCCHHHHHHHHHHHHHHHHHC
GIDISFPAMTIIAQYGMVVMLQKVGGNFAVAFVLAGGIGVLLGLVNALLVNRLRVPSIII
CCCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
TISTLNIFYGLLLWLSKGVWLYDFPPWFEKGVMLFKYTDADGYDYGLGLPLLTMIAVVLL
EHHHHHHHHHHHHHHHCCCEEEECCCHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHH
TAFIMNFTTVGRKIYAMGGNRESASRVGFSVLRLQLFVYGYMGLMSGAAGVVQAWTVMTV
HHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEE
APDSLLGYELTVLAAVVLGGTSLIGGRGTLTGTLLGVILLAVMQNGLNLLGVSSYWQTLI
CCCHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHH
TGAIIVVSISVTAWSQHQNRSLL
HHHHHEEEEEHHEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]