Click here to switch to the map view.

The map label for this gene is xynB [H]

Identifier: 238892850

GI number: 238892850

Start: 653956

End: 655635

Strand: Reverse

Name: xynB [H]

Synonym: KP1_0667

Alternate gene names: 238892850

Gene position: 655635-653956 (Counterclockwise)

Preceding gene: 238892851

Following gene: 238892848

Centisome position: 12.49

GC content: 58.04

Gene sequence:

>1680_bases
ATGTCACTTATTCAAAACCCGATATTACGCGGCTTTAATGCCGACCCCAGTATTATTCGCGTCGAGGATACGTACTATAT
TGCCAACTCGACGTTTGAGTGGTTCCCGGGCGTGCGTTTACATGAGTCCAAAGACCTGAAAAACTGGAACCTGCTGCCTT
CGCCGCTCTCCACCACCACCCTGCTGGATATGAAGGGCAACCCCTCCTCCGGCGGCATTTGGGCGCCGGCGCTCTCCTGG
GCCGACGGGCAATTCTGGTTGGTGTATACCGATGTGAAGGTCACCGAAGGCGCCTTTAAAGACATGACCAACTACCTGAC
CACGGCGAAGGATATTCGGGGCCCGTGGAGCGACCCGATCAAGCTGAACGGCGTCGGGTTTGACGCCTCGCTGTTCCATG
ACGACGATGGCCGGAAATATATCGTCCAGCAAACCTGGGATCACCGGGAGTATCATCACCCCTTCGATGGCATTACCTTA
ACGGAGCTGGATACCAAAACGCTGAAGTTAATGCCGGAAACCGCGCGCACCATCTACCGCGGCACCGCCGTGGCGCTGGT
CGAGGGGCCGCACCTCTATAAACTGAACGGCTACTACTATCTGTTTGCCGCCCAGGGCGGCACCGTGTTTACCCACCAGG
AGGTGGTGGCGCGGTCGAAAACCCTCGAGGCCGACAGCTTCGAAACCGAGCCGGGCGACGTGTTCTTAACCAACGTCGAT
ACCCCGGACAGCTACATCCAGAAACAGGGCCATGGCGCGCTGGTCTCCACCCCGGAAGGCGAATGGTATTACGCCTCGCT
CTGCGCCCGGCCGTGGAATCGCCCGGGGGAATCCATCTACGACCCGCGCGGCTGGTCAACCCTCGGCCGGGAAACCGCGA
TCCAGAAAGTGTACTGGGACGACGAGGGCTGGCCGCGTATTGAAGGCGGTCACGGCGGGAAAACCTTCGTCGAAGGGCCG
AAAGACGCCATCTTCACCGAAAGCGCCAGCGATAATAGCCAGCAGGATGACTTTACCTCGCCAGCGCTCGACCCGAACTG
GAATACCCTGCGAGTGCCGTTTACGGCCAAAATGGGCACCACCGGCGACGGCAAATTAACCTTAATCGGCCAGGGTTCGT
TAGCCAATACGCATGACCTGTCGCTGATTGCCCGCCGCTGGCAGGCCTTCTATTTTGACGCCGCGGTGAAGGTGAAATTC
GAGCCCTTCAGCTATCAGCAGATGGCCGGGTTAACGAATTACTATAACGACCGCCACTGGAGCTTTGTCTTCCTGACCTG
GAATGAAATTAACGGCAAGGTCATCGAAGTCGGCGAAAATAACCGCGGTAAATACACGTCGTACCTGAAAGATAACGCCA
TCAAGGTGCCGGACGGCGTGGAATACGTCTGGTTCCGGACCAAGGTCCGCAAGCAGACCTACAGCTATGAATACAGCTTC
GATGGCGTGTCGTTCACCGAGATCCCGGTCCTGCTGGATGCCGCGGTACTGTCCGATGACTATGTGTTGCAGAGCTACGG
CGGGTTCTTTACCGGGGCGTTCGTCGGCCTGGCGGCGGTAGACTACGCCGGGTACGGCACCCAGGCTGAGTTTTATCAGT
TCGAGTATCAGGAGCTGGGCGATAGGTTAGCGGCCGATGGCAGTTACAGCTGGGAGGCTGGCGAGACGCGGGATAAGTAA

Upstream 100 bases:

>100_bases
GTTACCGACATCAACCGTCAGCTGGATGAGATCCGCGTGTAGTTAAAAAAATTATAAATCAGACCGATCCTTAACTTTCC
ATTTTAAAAGGTGTAATGAA

Downstream 100 bases:

>100_bases
GAGAGAGCGGGCCCACGCTACCGGTGAGGTAGCGTGGGTTTTGTGGTGTGTTTGATGTAATTAAAGCGAGCGCTGTCGGA
TGTCAGTCTGCGGGGCGCAG

Product: putative beta-1,4-xylosidase

Products: NA

Alternate protein names: 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase [H]

Number of amino acids: Translated: 559; Mature: 558

Protein sequence:

>559_residues
MSLIQNPILRGFNADPSIIRVEDTYYIANSTFEWFPGVRLHESKDLKNWNLLPSPLSTTTLLDMKGNPSSGGIWAPALSW
ADGQFWLVYTDVKVTEGAFKDMTNYLTTAKDIRGPWSDPIKLNGVGFDASLFHDDDGRKYIVQQTWDHREYHHPFDGITL
TELDTKTLKLMPETARTIYRGTAVALVEGPHLYKLNGYYYLFAAQGGTVFTHQEVVARSKTLEADSFETEPGDVFLTNVD
TPDSYIQKQGHGALVSTPEGEWYYASLCARPWNRPGESIYDPRGWSTLGRETAIQKVYWDDEGWPRIEGGHGGKTFVEGP
KDAIFTESASDNSQQDDFTSPALDPNWNTLRVPFTAKMGTTGDGKLTLIGQGSLANTHDLSLIARRWQAFYFDAAVKVKF
EPFSYQQMAGLTNYYNDRHWSFVFLTWNEINGKVIEVGENNRGKYTSYLKDNAIKVPDGVEYVWFRTKVRKQTYSYEYSF
DGVSFTEIPVLLDAAVLSDDYVLQSYGGFFTGAFVGLAAVDYAGYGTQAEFYQFEYQELGDRLAADGSYSWEAGETRDK

Sequences:

>Translated_559_residues
MSLIQNPILRGFNADPSIIRVEDTYYIANSTFEWFPGVRLHESKDLKNWNLLPSPLSTTTLLDMKGNPSSGGIWAPALSW
ADGQFWLVYTDVKVTEGAFKDMTNYLTTAKDIRGPWSDPIKLNGVGFDASLFHDDDGRKYIVQQTWDHREYHHPFDGITL
TELDTKTLKLMPETARTIYRGTAVALVEGPHLYKLNGYYYLFAAQGGTVFTHQEVVARSKTLEADSFETEPGDVFLTNVD
TPDSYIQKQGHGALVSTPEGEWYYASLCARPWNRPGESIYDPRGWSTLGRETAIQKVYWDDEGWPRIEGGHGGKTFVEGP
KDAIFTESASDNSQQDDFTSPALDPNWNTLRVPFTAKMGTTGDGKLTLIGQGSLANTHDLSLIARRWQAFYFDAAVKVKF
EPFSYQQMAGLTNYYNDRHWSFVFLTWNEINGKVIEVGENNRGKYTSYLKDNAIKVPDGVEYVWFRTKVRKQTYSYEYSF
DGVSFTEIPVLLDAAVLSDDYVLQSYGGFFTGAFVGLAAVDYAGYGTQAEFYQFEYQELGDRLAADGSYSWEAGETRDK
>Mature_558_residues
SLIQNPILRGFNADPSIIRVEDTYYIANSTFEWFPGVRLHESKDLKNWNLLPSPLSTTTLLDMKGNPSSGGIWAPALSWA
DGQFWLVYTDVKVTEGAFKDMTNYLTTAKDIRGPWSDPIKLNGVGFDASLFHDDDGRKYIVQQTWDHREYHHPFDGITLT
ELDTKTLKLMPETARTIYRGTAVALVEGPHLYKLNGYYYLFAAQGGTVFTHQEVVARSKTLEADSFETEPGDVFLTNVDT
PDSYIQKQGHGALVSTPEGEWYYASLCARPWNRPGESIYDPRGWSTLGRETAIQKVYWDDEGWPRIEGGHGGKTFVEGPK
DAIFTESASDNSQQDDFTSPALDPNWNTLRVPFTAKMGTTGDGKLTLIGQGSLANTHDLSLIARRWQAFYFDAAVKVKFE
PFSYQQMAGLTNYYNDRHWSFVFLTWNEINGKVIEVGENNRGKYTSYLKDNAIKVPDGVEYVWFRTKVRKQTYSYEYSFD
GVSFTEIPVLLDAAVLSDDYVLQSYGGFFTGAFVGLAAVDYAGYGTQAEFYQFEYQELGDRLAADGSYSWEAGETRDK

Specific function: Beta-xylosidase is an intracellular xylan-degrading enzyme [H]

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=540, Percent_Identity=46.4814814814815, Blast_Score=478, Evalue=1e-136,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR006710 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.37 [H]

Molecular weight: Translated: 63132; Mature: 63000

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLIQNPILRGFNADPSIIRVEDTYYIANSTFEWFPGVRLHESKDLKNWNLLPSPLSTTT
CCCHHCHHHCCCCCCCCEEEEEEEEEEECCCHHHCCCCEEECCCCCCCCCCCCCCCCCEE
LLDMKGNPSSGGIWAPALSWADGQFWLVYTDVKVTEGAFKDMTNYLTTAKDIRGPWSDPI
EEEECCCCCCCCEEECEEECCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCE
KLNGVGFDASLFHDDDGRKYIVQQTWDHREYHHPFDGITLTELDTKTLKLMPETARTIYR
EEEEECCCEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCEEECCHHHHHHHC
GTAVALVEGPHLYKLNGYYYLFAAQGGTVFTHQEVVARSKTLEADSFETEPGDVFLTNVD
CEEEEEEECCEEEEECCEEEEEEECCCEEEEHHHHHHHHHCCCCCCCCCCCCCEEEEECC
TPDSYIQKQGHGALVSTPEGEWYYASLCARPWNRPGESIYDPRGWSTLGRETAIQKVYWD
CCHHHHHHCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHCHHHHEEEEEEC
DEGWPRIEGGHGGKTFVEGPKDAIFTESASDNSQQDDFTSPALDPNWNTLRVPFTAKMGT
CCCCCEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCC
TGDGKLTLIGQGSLANTHDLSLIARRWQAFYFDAAVKVKFEPFSYQQMAGLTNYYNDRHW
CCCCEEEEEECCCCCCCHHHHHHHHHHHHEEEEEEEEEEECCCCHHHHHHHHHHCCCCEE
SFVFLTWNEINGKVIEVGENNRGKYTSYLKDNAIKVPDGVEYVWFRTKVRKQTYSYEYSF
EEEEEEEECCCCEEEEECCCCCCCEEEECCCCCEECCCCCEEEEEEEEEHHHEEEEEEEE
DGVSFTEIPVLLDAAVLSDDYVLQSYGGFFTGAFVGLAAVDYAGYGTQAEFYQFEYQELG
CCCCHHHHHHHEEHHHHCCCEEEHHCCCHHHHHHHHHHHHHHCCCCCCHHHEEEEHHHHH
DRLAADGSYSWEAGETRDK
HHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SLIQNPILRGFNADPSIIRVEDTYYIANSTFEWFPGVRLHESKDLKNWNLLPSPLSTTT
CCHHCHHHCCCCCCCCEEEEEEEEEEECCCHHHCCCCEEECCCCCCCCCCCCCCCCCEE
LLDMKGNPSSGGIWAPALSWADGQFWLVYTDVKVTEGAFKDMTNYLTTAKDIRGPWSDPI
EEEECCCCCCCCEEECEEECCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCE
KLNGVGFDASLFHDDDGRKYIVQQTWDHREYHHPFDGITLTELDTKTLKLMPETARTIYR
EEEEECCCEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCEEECCHHHHHHHC
GTAVALVEGPHLYKLNGYYYLFAAQGGTVFTHQEVVARSKTLEADSFETEPGDVFLTNVD
CEEEEEEECCEEEEECCEEEEEEECCCEEEEHHHHHHHHHCCCCCCCCCCCCCEEEEECC
TPDSYIQKQGHGALVSTPEGEWYYASLCARPWNRPGESIYDPRGWSTLGRETAIQKVYWD
CCHHHHHHCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHCHHHHEEEEEEC
DEGWPRIEGGHGGKTFVEGPKDAIFTESASDNSQQDDFTSPALDPNWNTLRVPFTAKMGT
CCCCCEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCC
TGDGKLTLIGQGSLANTHDLSLIARRWQAFYFDAAVKVKFEPFSYQQMAGLTNYYNDRHW
CCCCEEEEEECCCCCCCHHHHHHHHHHHHEEEEEEEEEEECCCCHHHHHHHHHHCCCCEE
SFVFLTWNEINGKVIEVGENNRGKYTSYLKDNAIKVPDGVEYVWFRTKVRKQTYSYEYSF
EEEEEEEECCCCEEEEECCCCCCCEEEECCCCCEECCCCCEEEEEEEEEHHHEEEEEEEE
DGVSFTEIPVLLDAAVLSDDYVLQSYGGFFTGAFVGLAAVDYAGYGTQAEFYQFEYQELG
CCCCHHHHHHHEEHHHHCCCEEEHHCCCHHHHHHHHHHHHHHCCCCCCHHHEEEEHHHHH
DRLAADGSYSWEAGETRDK
HHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2440680; 1765080 [H]