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The map label for this gene is yagA [C]

Identifier: 238892845

GI number: 238892845

Start: 648426

End: 648902

Strand: Direct

Name: yagA [C]

Synonym: KP1_0661

Alternate gene names: 238892845

Gene position: 648426-648902 (Clockwise)

Preceding gene: 238892844

Following gene: 238892847

Centisome position: 12.35

GC content: 48.43

Gene sequence:

>477_bases
ATGGATTTCGTGTCGGATAATCTGTTTAACGGAACACGTTTCCGGGCGCTGACTGTAGTGGATAATTTTAGTCGGGAGTG
TGTGGCGATCCATGCCGGAAAGTCGCTGAAAGGTGAGTATGTGGTCGGTGTGATGGAAAGGTTGCGGGTGCTGGGCAAGC
GTCTGCCGGTACGTATTCAGACAGATAACGGCAGCGAGTTTATTTTGAAAAGTCTGGATAAATGGGCGTATGAGCACGGT
GTCACAATGGACTTATCCCGCCCCGGAAAACCAACGGATAACCCGTTTATTGAATCATTTAACGGCAGTCTGCGGGATGA
ATGCCTGAACATTCACTGGTTTCTCTCGCTGGAAGATGCGCAGGACAAACTCGACAACTGGCGTAGGGAATATAATCATG
AGAGAACGCATTCATCATTAAATGACATGACTCCGGCTGAATTCATCCGAAGTCTCCGGAAAGACGAAGATCTCTGA

Upstream 100 bases:

>100_bases
TTTACTGTCTGGAAGGCCTCAACCTGCGCAAAAAGCGCCCCCGCATGCATGTCATCGTCAGCAACGTCCGGTCCTGATCG
GTATCGATCAGTGCTGGAGT

Downstream 100 bases:

>100_bases
TTTAGCACTGCACTGAATTTGGGCCAGGGTCAAATCTGGCCGGGAACTCAAAAATGCATGCAACTAAAACAGGGTTATTT
ACAGACAAATTTAAAATTAG

Product: putative transposase-related protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MDFVSDNLFNGTRFRALTVVDNFSRECVAIHAGKSLKGEYVVGVMERLRVLGKRLPVRIQTDNGSEFILKSLDKWAYEHG
VTMDLSRPGKPTDNPFIESFNGSLRDECLNIHWFLSLEDAQDKLDNWRREYNHERTHSSLNDMTPAEFIRSLRKDEDL

Sequences:

>Translated_158_residues
MDFVSDNLFNGTRFRALTVVDNFSRECVAIHAGKSLKGEYVVGVMERLRVLGKRLPVRIQTDNGSEFILKSLDKWAYEHG
VTMDLSRPGKPTDNPFIESFNGSLRDECLNIHWFLSLEDAQDKLDNWRREYNHERTHSSLNDMTPAEFIRSLRKDEDL
>Mature_158_residues
MDFVSDNLFNGTRFRALTVVDNFSRECVAIHAGKSLKGEYVVGVMERLRVLGKRLPVRIQTDNGSEFILKSLDKWAYEHG
VTMDLSRPGKPTDNPFIESFNGSLRDECLNIHWFLSLEDAQDKLDNWRREYNHERTHSSLNDMTPAEFIRSLRKDEDL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=155, Percent_Identity=32.258064516129, Blast_Score=69, Evalue=1e-13,
Organism=Escherichia coli, GI1789981, Length=151, Percent_Identity=25.1655629139073, Blast_Score=60, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 18350; Mature: 18350

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFVSDNLFNGTRFRALTVVDNFSRECVAIHAGKSLKGEYVVGVMERLRVLGKRLPVRIQ
CCCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEEEE
TDNGSEFILKSLDKWAYEHGVTMDLSRPGKPTDNPFIESFNGSLRDECLNIHWFLSLEDA
CCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHCCCHHHHHHEEEEEEEEECHH
QDKLDNWRREYNHERTHSSLNDMTPAEFIRSLRKDEDL
HHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure
MDFVSDNLFNGTRFRALTVVDNFSRECVAIHAGKSLKGEYVVGVMERLRVLGKRLPVRIQ
CCCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEEEE
TDNGSEFILKSLDKWAYEHGVTMDLSRPGKPTDNPFIESFNGSLRDECLNIHWFLSLEDA
CCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHCCCHHHHHHEEEEEEEEECHH
QDKLDNWRREYNHERTHSSLNDMTPAEFIRSLRKDEDL
HHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]