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The map label for this gene is ugpB [H]

Identifier: 238892762

GI number: 238892762

Start: 556838

End: 558148

Strand: Reverse

Name: ugpB [H]

Synonym: KP1_0565

Alternate gene names: 238892762

Gene position: 558148-556838 (Counterclockwise)

Preceding gene: 238892763

Following gene: 238892757

Centisome position: 10.63

GC content: 60.41

Gene sequence:

>1311_bases
ATGTTTAAACCCCTCACGCTAGTCGCGGTTGGGCTCAGCCTCGCCCTGAGCGGCGCGGCGCTGGCAAAAGAGAAAATAGA
CTTCATGTTCCCGGCGCCGGTGGACGGCAAGCTGACCATGGAGATGACCCGCGTCATTAAGCAATTCAACGACTCGCAGC
AGGATGTCGAAGTGCGCGGCATCTTCACCGGCAACTACGACACCACCAAGATCAAAGCCGAATCGGCGCAGAAGGCCGGC
CAGCCGCCGGCGCTGGTGATCATGTCCGCCAACTTCACCACCGATCTGGCGCTGAAGGATGAGATCCTGCCGATGGATGA
GCTGTTTAAATATGGCGATCAAAAGGCCGGCGATTTTCTGCAAAAGGAATTCTGGCCCGCGATGCATAAGAACGCCCAGG
TGATGGGCACCACCTATGCGATCCCGTTCCATAACTCGACGCCGATCCTCTATTACAACAAGACGATGTTCGATCGGGCC
GGGATCAAACAGCCGCCGCAGACCTGGGCCGAGCTGCTGGCCGATGCCAAAAAGCTGACCGACGAAAGCAAAGGCCAGTG
GGGGATCATGCTGCCGTCGACCAACGACGACTACGGCGGCTGGATCTTCTCGGCGCTGGTGCGCGCCAACGGCGGGAAAT
ACTTTAACGAAGACTATCCGGGCGAGGTCTATTACAACTCGCCGACCGCCATCGGCGCCCTGCGCTTCTGGCAGGATCTG
ATCTACAAGGACAAGGTGATGCCGTCCGGGGTGCTGAACTCGAAGCAGATCAGCGCCGCGTTCTTCTCCGGCAAGCTCGG
GATGGCGATGCTCAGCACTGGCGCGCTGGGCTTTATGCGCGAGAACAGCAAAGACTTTGAGCTTGGGGTGGCGATGCTGC
CGGCCAAAGAGCAGCGCGCGGTGCCGATCGGCGGCGCCAGCCTGGTGAGTTTTAAAGGCATCAGCGATGCGCAGAAGAAA
GCGGCGTATCAGTTCCTGACCTATCTGGTGAGCCCCGACGTGAACGGCGCGTGGAGCCGCTTCACCGGCTACTTCTCGCC
GCGCAAGGCGTCATACGATACGCCGGAGATGAAGGCCTATCTGCAGCAGGATCCGCGGGCGGCGATCGCCCTTGAGCAGC
TGAAGTACGCCCATCCGTGGTACTCCACCTGGGAGACCGTGGCGGTGCGTAAGGCGATGGAGAACCAGCTGGCGGCGGTG
GTCAATGATGCCAAAGTGACGCCGGAAGCGGCGGTGCAGGCAGCGCAGAAGGAAGCCGACGCGCTGATGAAACCGTATGT
GGATAAGACCGCGCTGGCGGAAGTGAAGTGA

Upstream 100 bases:

>100_bases
CGGAGCGTACACGTAGTACGTGAGGATTCTGAGCACTGCCCAGGGCCAAACTGGCAAATAAAATAGCCTGTGGACAGGTG
CTTACTGATGGAGACAGATC

Downstream 100 bases:

>100_bases
CGCGTTACCCGTCATCGTCACCCTCACCCTGGCCCTCTCCCTGAGGGAGAGGGAACTGTCCGGCGCTGTGGTTAAGCCCT
GGGTCCGGTTGAGAAAGGAA

Product: putative SN-glycerol-3-phosphate-binding periplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 436

Protein sequence:

>436_residues
MFKPLTLVAVGLSLALSGAALAKEKIDFMFPAPVDGKLTMEMTRVIKQFNDSQQDVEVRGIFTGNYDTTKIKAESAQKAG
QPPALVIMSANFTTDLALKDEILPMDELFKYGDQKAGDFLQKEFWPAMHKNAQVMGTTYAIPFHNSTPILYYNKTMFDRA
GIKQPPQTWAELLADAKKLTDESKGQWGIMLPSTNDDYGGWIFSALVRANGGKYFNEDYPGEVYYNSPTAIGALRFWQDL
IYKDKVMPSGVLNSKQISAAFFSGKLGMAMLSTGALGFMRENSKDFELGVAMLPAKEQRAVPIGGASLVSFKGISDAQKK
AAYQFLTYLVSPDVNGAWSRFTGYFSPRKASYDTPEMKAYLQQDPRAAIALEQLKYAHPWYSTWETVAVRKAMENQLAAV
VNDAKVTPEAAVQAAQKEADALMKPYVDKTALAEVK

Sequences:

>Translated_436_residues
MFKPLTLVAVGLSLALSGAALAKEKIDFMFPAPVDGKLTMEMTRVIKQFNDSQQDVEVRGIFTGNYDTTKIKAESAQKAG
QPPALVIMSANFTTDLALKDEILPMDELFKYGDQKAGDFLQKEFWPAMHKNAQVMGTTYAIPFHNSTPILYYNKTMFDRA
GIKQPPQTWAELLADAKKLTDESKGQWGIMLPSTNDDYGGWIFSALVRANGGKYFNEDYPGEVYYNSPTAIGALRFWQDL
IYKDKVMPSGVLNSKQISAAFFSGKLGMAMLSTGALGFMRENSKDFELGVAMLPAKEQRAVPIGGASLVSFKGISDAQKK
AAYQFLTYLVSPDVNGAWSRFTGYFSPRKASYDTPEMKAYLQQDPRAAIALEQLKYAHPWYSTWETVAVRKAMENQLAAV
VNDAKVTPEAAVQAAQKEADALMKPYVDKTALAEVK
>Mature_436_residues
MFKPLTLVAVGLSLALSGAALAKEKIDFMFPAPVDGKLTMEMTRVIKQFNDSQQDVEVRGIFTGNYDTTKIKAESAQKAG
QPPALVIMSANFTTDLALKDEILPMDELFKYGDQKAGDFLQKEFWPAMHKNAQVMGTTYAIPFHNSTPILYYNKTMFDRA
GIKQPPQTWAELLADAKKLTDESKGQWGIMLPSTNDDYGGWIFSALVRANGGKYFNEDYPGEVYYNSPTAIGALRFWQDL
IYKDKVMPSGVLNSKQISAAFFSGKLGMAMLSTGALGFMRENSKDFELGVAMLPAKEQRAVPIGGASLVSFKGISDAQKK
AAYQFLTYLVSPDVNGAWSRFTGYFSPRKASYDTPEMKAYLQQDPRAAIALEQLKYAHPWYSTWETVAVRKAMENQLAAV
VNDAKVTPEAAVQAAQKEADALMKPYVDKTALAEVK

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=421, Percent_Identity=26.8408551068884, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787569, Length=189, Percent_Identity=26.984126984127, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 48201; Mature: 48201

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKPLTLVAVGLSLALSGAALAKEKIDFMFPAPVDGKLTMEMTRVIKQFNDSQQDVEVRG
CCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEE
IFTGNYDTTKIKAESAQKAGQPPALVIMSANFTTDLALKDEILPMDELFKYGDQKAGDFL
EEECCCCCEEEEHHHHHHCCCCCEEEEEECCCCCCEEECCCCCCHHHHHHCCCHHHHHHH
QKEFWPAMHKNAQVMGTTYAIPFHNSTPILYYNKTMFDRAGIKQPPQTWAELLADAKKLT
HHHHHHHHCCCCEEEEEEEEEECCCCCCEEEECCHHHHHCCCCCCHHHHHHHHHHHHHHC
DESKGQWGIMLPSTNDDYGGWIFSALVRANGGKYFNEDYPGEVYYNSPTAIGALRFWQDL
CCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHH
IYKDKVMPSGVLNSKQISAAFFSGKLGMAMLSTGALGFMRENSKDFELGVAMLPAKEQRA
HHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHCCCCEEECCCCCCCEEEEEECCCCCCCC
VPIGGASLVSFKGISDAQKKAAYQFLTYLVSPDVNGAWSRFTGYFSPRKASYDTPEMKAY
CCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCHHHHHH
LQQDPRAAIALEQLKYAHPWYSTWETVAVRKAMENQLAAVVNDAKVTPEAAVQAAQKEAD
HHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
ALMKPYVDKTALAEVK
HHHHCCCCCHHHCCCC
>Mature Secondary Structure
MFKPLTLVAVGLSLALSGAALAKEKIDFMFPAPVDGKLTMEMTRVIKQFNDSQQDVEVRG
CCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEE
IFTGNYDTTKIKAESAQKAGQPPALVIMSANFTTDLALKDEILPMDELFKYGDQKAGDFL
EEECCCCCEEEEHHHHHHCCCCCEEEEEECCCCCCEEECCCCCCHHHHHHCCCHHHHHHH
QKEFWPAMHKNAQVMGTTYAIPFHNSTPILYYNKTMFDRAGIKQPPQTWAELLADAKKLT
HHHHHHHHCCCCEEEEEEEEEECCCCCCEEEECCHHHHHCCCCCCHHHHHHHHHHHHHHC
DESKGQWGIMLPSTNDDYGGWIFSALVRANGGKYFNEDYPGEVYYNSPTAIGALRFWQDL
CCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHH
IYKDKVMPSGVLNSKQISAAFFSGKLGMAMLSTGALGFMRENSKDFELGVAMLPAKEQRA
HHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHCCCCEEECCCCCCCEEEEEECCCCCCCC
VPIGGASLVSFKGISDAQKKAAYQFLTYLVSPDVNGAWSRFTGYFSPRKASYDTPEMKAY
CCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCHHHHHH
LQQDPRAAIALEQLKYAHPWYSTWETVAVRKAMENQLAAVVNDAKVTPEAAVQAAQKEAD
HHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
ALMKPYVDKTALAEVK
HHHHCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA