Click here to switch to the map view.

The map label for this gene is ytfT [H]

Identifier: 238892706

GI number: 238892706

Start: 493630

End: 494655

Strand: Direct

Name: ytfT [H]

Synonym: KP1_0497

Alternate gene names: 238892706

Gene position: 493630-494655 (Clockwise)

Preceding gene: 238892705

Following gene: 238892707

Centisome position: 9.41

GC content: 64.42

Gene sequence:

>1026_bases
ATGATGCCTCGATCTCTTTCGCAAACCGGCCCGGAGAAGCGACGCTTCACCTGGCCGAAGGGCACCCCGCAGATTATTGC
CCTGCTGCTGGTTCTGCTGGTAGACAGCCTGGTGGCGCCCCATTTTTATCAGGTGGTGCTCCAGGATGGCCGCCTGTTTG
GCAGCCCGATCGATATTCTCAACCGCGCCGCGCCGGTGGCGCTGCTGGCGATTGGCATGACGCTGGTGATCGCCACCGGC
GGCATCGACCTGTCGGTAGGGGCGGTGATGGCGATTGCCGGCGCGACGGCCGCCTCGATGACCGTCGCCGGGCACAGCCT
GCCGGTGGTGCTGTTGGCCGCGCTGGCCGCGGGCGCGCTGGCCGGATTGTGGAACGGCATCCTCGTGGCGGTCCTTAAGA
TCCAGCCCTTTGTGGCGACGCTGATCCTGATGGTGGCCGGGCGCGGGGTGGCGCAGTTGATCACCGCCGGGCAGATCGTC
ACCTTTGATTCCCCGGCCCTGGCGTGGCTCGGCAGCGGATCGTTTCTGCTGTTTCCGACGCCGGTGATCGTCGCCGCCGC
TACGCTGCTGCTGTTCTGGCTGTTTACCCGTAAAACGGCGCTGGGCATGTTTATTGAGGCGGTAGGGATCAACATCCGCG
CGGCGAAAAACGCCGGCGTCAATACCCGCATCGTGGTGATGCTGGCCTATGTCCTGAGCGGCGTCTGCGCGGCGATCGCC
GGGATCATCGTGGCGGCGGACATCCGCGGCGCGGATGCCAATAACGCCGGGCTATGGCTTGAGCTGGACGCCATTCTGGC
GGTGGTCATCGGCGGCGCCTCGCTGATGGGCGGGCGCTTTAACCTGCTGCTCTCGGTGGTGGGGGCGCTGATTATCCAGG
GAATGAACACCGGGATTTTGCTCTCCGGCTTCCCGCCGGAGCTCAACCAGGTGGTGAAAGCGGTGGTGGTGCTGTGCGTA
CTGATTGTCCAGTCGCCGCGCTTTATCGGTTTACTGAAAGGGGTACGCGGCCGTGATAAAACGTAA

Upstream 100 bases:

>100_bases
GTCATTATCCTGCGCGATCGCCGACAGGTGGCGGAGATCCCGCTCGCCGAGCTCTCTGTTCCGGCGATCATGAACGCTAT
TGCGGCATAAGGAGTAACCC

Downstream 100 bases:

>100_bases
TTTACCATTGATGATCACCCTTGCGGTGTTTGTGCTGGGCTACCTCTACTGCCTGACTCAGTTCCCCGGTTTTGCCTCAA
CGCGGGTGATCTGCAATATC

Product: putative D-ribose transport system permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MMPRSLSQTGPEKRRFTWPKGTPQIIALLLVLLVDSLVAPHFYQVVLQDGRLFGSPIDILNRAAPVALLAIGMTLVIATG
GIDLSVGAVMAIAGATAASMTVAGHSLPVVLLAALAAGALAGLWNGILVAVLKIQPFVATLILMVAGRGVAQLITAGQIV
TFDSPALAWLGSGSFLLFPTPVIVAAATLLLFWLFTRKTALGMFIEAVGINIRAAKNAGVNTRIVVMLAYVLSGVCAAIA
GIIVAADIRGADANNAGLWLELDAILAVVIGGASLMGGRFNLLLSVVGALIIQGMNTGILLSGFPPELNQVVKAVVVLCV
LIVQSPRFIGLLKGVRGRDKT

Sequences:

>Translated_341_residues
MMPRSLSQTGPEKRRFTWPKGTPQIIALLLVLLVDSLVAPHFYQVVLQDGRLFGSPIDILNRAAPVALLAIGMTLVIATG
GIDLSVGAVMAIAGATAASMTVAGHSLPVVLLAALAAGALAGLWNGILVAVLKIQPFVATLILMVAGRGVAQLITAGQIV
TFDSPALAWLGSGSFLLFPTPVIVAAATLLLFWLFTRKTALGMFIEAVGINIRAAKNAGVNTRIVVMLAYVLSGVCAAIA
GIIVAADIRGADANNAGLWLELDAILAVVIGGASLMGGRFNLLLSVVGALIIQGMNTGILLSGFPPELNQVVKAVVVLCV
LIVQSPRFIGLLKGVRGRDKT
>Mature_341_residues
MMPRSLSQTGPEKRRFTWPKGTPQIIALLLVLLVDSLVAPHFYQVVLQDGRLFGSPIDILNRAAPVALLAIGMTLVIATG
GIDLSVGAVMAIAGATAASMTVAGHSLPVVLLAALAAGALAGLWNGILVAVLKIQPFVATLILMVAGRGVAQLITAGQIV
TFDSPALAWLGSGSFLLFPTPVIVAAATLLLFWLFTRKTALGMFIEAVGINIRAAKNAGVNTRIVVMLAYVLSGVCAAIA
GIIVAADIRGADANNAGLWLELDAILAVVIGGASLMGGRFNLLLSVVGALIIQGMNTGILLSGFPPELNQVVKAVVVLCV
LIVQSPRFIGLLKGVRGRDKT

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693214, Length=341, Percent_Identity=87.683284457478, Blast_Score=509, Evalue=1e-146,
Organism=Escherichia coli, GI1790191, Length=327, Percent_Identity=37.9204892966361, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI1788896, Length=295, Percent_Identity=36.271186440678, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI145693152, Length=333, Percent_Identity=30.9309309309309, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1790524, Length=294, Percent_Identity=28.9115646258503, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787793, Length=275, Percent_Identity=36.7272727272727, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI87082395, Length=250, Percent_Identity=35.6, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788471, Length=281, Percent_Identity=33.0960854092527, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1787794, Length=272, Percent_Identity=25.7352941176471, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1789992, Length=128, Percent_Identity=35.15625, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35219; Mature: 35219

Theoretical pI: Translated: 10.81; Mature: 10.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMPRSLSQTGPEKRRFTWPKGTPQIIALLLVLLVDSLVAPHFYQVVLQDGRLFGSPIDIL
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
NRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATAASMTVAGHSLPVVLLAALAAGAL
HHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHCCHHHHHEECCCCHHHHHHHHHHHHHH
AGLWNGILVAVLKIQPFVATLILMVAGRGVAQLITAGQIVTFDSPALAWLGSGSFLLFPT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCEEEEECCCHHHEECCCCEEEECC
PVIVAAATLLLFWLFTRKTALGMFIEAVGINIRAAKNAGVNTRIVVMLAYVLSGVCAAIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
GIIVAADIRGADANNAGLWLELDAILAVVIGGASLMGGRFNLLLSVVGALIIQGMNTGIL
HHHHHCCCCCCCCCCCCEEEEHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHCCCCCCEE
LSGFPPELNQVVKAVVVLCVLIVQSPRFIGLLKGVRGRDKT
EECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCC
>Mature Secondary Structure
MMPRSLSQTGPEKRRFTWPKGTPQIIALLLVLLVDSLVAPHFYQVVLQDGRLFGSPIDIL
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
NRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATAASMTVAGHSLPVVLLAALAAGAL
HHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHCCHHHHHEECCCCHHHHHHHHHHHHHH
AGLWNGILVAVLKIQPFVATLILMVAGRGVAQLITAGQIVTFDSPALAWLGSGSFLLFPT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCEEEEECCCHHHEECCCCEEEECC
PVIVAAATLLLFWLFTRKTALGMFIEAVGINIRAAKNAGVNTRIVVMLAYVLSGVCAAIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
GIIVAADIRGADANNAGLWLELDAILAVVIGGASLMGGRFNLLLSVVGALIIQGMNTGIL
HHHHHCCCCCCCCCCCCEEEEHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHCCCCCCEE
LSGFPPELNQVVKAVVVLCVLIVQSPRFIGLLKGVRGRDKT
EECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]