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The map label for this gene is yjeR [H]

Identifier: 238892647

GI number: 238892647

Start: 436445

End: 437044

Strand: Direct

Name: yjeR [H]

Synonym: KP1_0431

Alternate gene names: 238892647

Gene position: 436445-437044 (Clockwise)

Preceding gene: 238892643

Following gene: 238892649

Centisome position: 8.32

GC content: 54.67

Gene sequence:

>600_bases
ATGATACACGCTATTTTAGATGAATATAGTCACGCGAGAAGGGTGGAAAATAGCATGAGTGCAAATGAAAACAACCTCAT
TTGGATCGATCTTGAGATGACAGGGCTGGATCCGGAGCGCGATCGCATTATCGAAATCGCCACCCTGGTGACCGATGCCA
ACCTGAACATTCTGGCTGAGGGCCCGGCCATCGCGGTGCATCAGTCGGACGCTCAGCTGGCATTAATGGACGAGTGGAAT
GTGCGGACGCATACCGGCAGCGGTCTGGTGGATCGCGTAAAGGCGAGCACCGTCAGCGAGCACGATGCCGAACTGGCGAC
CATTGAGTTTCTTAAGCAGTGGGTGCCGGCGGGCAAGTCGCCGATCTGCGGCAACAGTATCGGCCAGGATCGTCGCTTCC
TGTTTAAGTACATGCCGCAACTGGAAGCCTATTTCCACTATCGCTATCTGGACGTTAGCACGCTGAAAGAGCTGGCGCGC
CGCTGGAAGCCGGAAATTCTCGACGGCTTTAAAAAGCAGGGCACTCATCAGGCGATGGACGATATCCGCGAGTCGGTCGC
CGAGCTGGCTTACTACCGCGAACACTTCATTAAACTGTAA

Upstream 100 bases:

>100_bases
GCGCTGGTGGTTGGCTTTGACGCGGCGCTGCTGGCCTTTGGAGAGTTTATTTTTACTCAATCGAACTGGCTCCTGGTCGC
CCTGATGGGGCAAAACCTCT

Downstream 100 bases:

>100_bases
ACCGCGACCGGGCCCTGTGCGCGGCCCGGTACACTTTTCTGCGTTATTTAAACCACTTCTGCTGCATCTGCTGGAAGTCA
GGTGTCGCCATGACCGCGGC

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MIHAILDEYSHARRVENSMSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPAIAVHQSDAQLALMDEWN
VRTHTGSGLVDRVKASTVSEHDAELATIEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPQLEAYFHYRYLDVSTLKELAR
RWKPEILDGFKKQGTHQAMDDIRESVAELAYYREHFIKL

Sequences:

>Translated_199_residues
MIHAILDEYSHARRVENSMSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPAIAVHQSDAQLALMDEWN
VRTHTGSGLVDRVKASTVSEHDAELATIEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPQLEAYFHYRYLDVSTLKELAR
RWKPEILDGFKKQGTHQAMDDIRESVAELAYYREHFIKL
>Mature_199_residues
MIHAILDEYSHARRVENSMSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPAIAVHQSDAQLALMDEWN
VRTHTGSGLVDRVKASTVSEHDAELATIEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPQLEAYFHYRYLDVSTLKELAR
RWKPEILDGFKKQGTHQAMDDIRESVAELAYYREHFIKL

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI224496106, Length=184, Percent_Identity=47.8260869565217, Blast_Score=182, Evalue=2e-46,
Organism=Escherichia coli, GI87082382, Length=181, Percent_Identity=92.8176795580111, Blast_Score=356, Evalue=1e-100,
Organism=Caenorhabditis elegans, GI17557752, Length=177, Percent_Identity=51.4124293785311, Blast_Score=171, Evalue=2e-43,
Organism=Saccharomyces cerevisiae, GI6323088, Length=182, Percent_Identity=35.1648351648352, Blast_Score=114, Evalue=1e-26,
Organism=Drosophila melanogaster, GI21355135, Length=183, Percent_Identity=45.3551912568306, Blast_Score=185, Evalue=1e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 22842; Mature: 22842

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHAILDEYSHARRVENSMSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE
CCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEC
GPAIAVHQSDAQLALMDEWNVRTHTGSGLVDRVKASTVSEHDAELATIEFLKQWVPAGKS
CCEEEEECCCCEEEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PICGNSIGQDRRFLFKYMPQLEAYFHYRYLDVSTLKELARRWKPEILDGFKKQGTHQAMD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHH
DIRESVAELAYYREHFIKL
HHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIHAILDEYSHARRVENSMSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE
CCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEC
GPAIAVHQSDAQLALMDEWNVRTHTGSGLVDRVKASTVSEHDAELATIEFLKQWVPAGKS
CCEEEEECCCCEEEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PICGNSIGQDRRFLFKYMPQLEAYFHYRYLDVSTLKELARRWKPEILDGFKKQGTHQAMD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHH
DIRESVAELAYYREHFIKL
HHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA