| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238028269
Identifier: 238028269
GI number: 238028269
Start: 3096940
End: 3097620
Strand: Reverse
Name: 238028269
Synonym: bglu_1g27230
Alternate gene names: NA
Gene position: 3097620-3096940 (Counterclockwise)
Preceding gene: 238028270
Following gene: 238028268
Centisome position: 79.29
GC content: 66.23
Gene sequence:
>681_bases GTGAGCGACTACGAGCTGGGCGAAATGGATCGCCGCATGGCGTGCCTGACGCAGTCGGCCATCGTGGAGGCGGTGACCTA CGATCCGCCGCGCGTGAAGGTGCGCATCGGCGATTGGGTAAGCGACTGGCTGAAATGGCAAGCCGGCGCGGCCGGTGCGG TTCGCCAGTGGCGTCCTCCCTCCCGCGACGAGGAGGTCGCTTTGTGGGCGCCGTCCGGCGATCTGGCGGCAGCCTTCGTC GCGCCCGGCTACTACACGGATCAGCACGGCGGTGCTGGCCGGACGAGCCCGGATGAGACGGCCATCGATTATCCCGATGG GGCGTTCGAGCAATACAACCATGCAACGCACGACTACACGCTGTCGGTGCCGGCCGGTGGCCGGATCCTGTTTCGCATCG GCTCAACCGAGTTCGAGCTTCGGGCTGATGGTGCTACGCTCCGGAGCGACAAGCTACTCGCCGAAGTGCCGGATTCGACA TTCACGGGCAACACGACGACGGAGCGGCTGCTGACCTTCAACGGCGGCATGCAGGGACGGCCGGGAGACGGGCAGGGCGT AGCGGTGAAGGTCGACGGCGGTGCGGAATTTACGGCGGATGTCGTTGCAGCTGGCACGTCAGTTCACGGGCACCAGCACC GCGAGCAGGGGGACGGTGAGCTTGTGAGTCCACCGGTTTGA
Upstream 100 bases:
>100_bases CACCGCAGGGCCGGGAGATCCGCTGGGGCGTCTACCCGGAGACAGGAACTGAGCATCAAGGCGACTACGTCAACGTGGCA ATCGCAGAGGAGGGGCGACA
Downstream 100 bases:
>100_bases TGGAATCTGTAGTTTTCGACAGCTATCGAACTTTCAATTGTTGTGTATGTTCCTCGCGCGGCTGAGTGTCGCGCAAAGAT ACGTCATAACAATGAGGGCC
Product: phage baseplate assembly protein V
Products: NA
Alternate protein names: Baseplate Assembly Protein V; Baseplate Assembly Protein GpV; Phage-Related Baseplate Assembly Protein V; Pyocin R2_PP; Phage Baseplate Assembly Protein; Phage P2-Like Baseplate Assembly Protein; Phage P2 Baseplate Assembly GpV Protein; Prophage LambdaW5 Baseplate Assembly Protein V; Phage-Related Baseplate Assembly Protein; Phage P2 Baseplate Assembly GpV-Like Protein; Phage Baseplate Assembly-Like Protein; Bacteriophage P2 Baseplate Assembly Protein GPV
Number of amino acids: Translated: 226; Mature: 225
Protein sequence:
>226_residues MSDYELGEMDRRMACLTQSAIVEAVTYDPPRVKVRIGDWVSDWLKWQAGAAGAVRQWRPPSRDEEVALWAPSGDLAAAFV APGYYTDQHGGAGRTSPDETAIDYPDGAFEQYNHATHDYTLSVPAGGRILFRIGSTEFELRADGATLRSDKLLAEVPDST FTGNTTTERLLTFNGGMQGRPGDGQGVAVKVDGGAEFTADVVAAGTSVHGHQHREQGDGELVSPPV
Sequences:
>Translated_226_residues MSDYELGEMDRRMACLTQSAIVEAVTYDPPRVKVRIGDWVSDWLKWQAGAAGAVRQWRPPSRDEEVALWAPSGDLAAAFV APGYYTDQHGGAGRTSPDETAIDYPDGAFEQYNHATHDYTLSVPAGGRILFRIGSTEFELRADGATLRSDKLLAEVPDST FTGNTTTERLLTFNGGMQGRPGDGQGVAVKVDGGAEFTADVVAAGTSVHGHQHREQGDGELVSPPV >Mature_225_residues SDYELGEMDRRMACLTQSAIVEAVTYDPPRVKVRIGDWVSDWLKWQAGAAGAVRQWRPPSRDEEVALWAPSGDLAAAFVA PGYYTDQHGGAGRTSPDETAIDYPDGAFEQYNHATHDYTLSVPAGGRILFRIGSTEFELRADGATLRSDKLLAEVPDSTF TGNTTTERLLTFNGGMQGRPGDGQGVAVKVDGGAEFTADVVAAGTSVHGHQHREQGDGELVSPPV
Specific function: Unknown
COG id: COG4540
COG function: function code R; Phage P2 baseplate assembly protein gpV
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24267; Mature: 24136
Theoretical pI: Translated: 4.49; Mature: 4.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDYELGEMDRRMACLTQSAIVEAVTYDPPRVKVRIGDWVSDWLKWQAGAAGAVRQWRPP CCCCCCCHHHHHHHHHHHHHHHHEEECCCCEEEEEECCHHHHHHHHCCCCCCCHHHCCCC SRDEEVALWAPSGDLAAAFVAPGYYTDQHGGAGRTSPDETAIDYPDGAFEQYNHATHDYT CCCCCEEEECCCCCEEEEEECCCEEECCCCCCCCCCCCCCEEECCCCHHHHHCCCCCCEE LSVPAGGRILFRIGSTEFELRADGATLRSDKLLAEVPDSTFTGNTTTERLLTFNGGMQGR EECCCCCEEEEEECCCEEEEEECCCEECCCCEEEECCCCCCCCCCCCEEEEEECCCCCCC PGDGQGVAVKVDGGAEFTADVVAAGTSVHGHQHREQGDGELVSPPV CCCCCEEEEEECCCCCEEEHEEECCCCCCCCCCHHCCCCCCCCCCC >Mature Secondary Structure SDYELGEMDRRMACLTQSAIVEAVTYDPPRVKVRIGDWVSDWLKWQAGAAGAVRQWRPP CCCCCCHHHHHHHHHHHHHHHHEEECCCCEEEEEECCHHHHHHHHCCCCCCCHHHCCCC SRDEEVALWAPSGDLAAAFVAPGYYTDQHGGAGRTSPDETAIDYPDGAFEQYNHATHDYT CCCCCEEEECCCCCEEEEEECCCEEECCCCCCCCCCCCCCEEECCCCHHHHHCCCCCCEE LSVPAGGRILFRIGSTEFELRADGATLRSDKLLAEVPDSTFTGNTTTERLLTFNGGMQGR EECCCCCEEEEEECCCEEEEEECCCEECCCCEEEECCCCCCCCCCCCEEEEEECCCCCCC PGDGQGVAVKVDGGAEFTADVVAAGTSVHGHQHREQGDGELVSPPV CCCCCEEEEEECCCCCEEEHEEECCCCCCCCCCHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA