| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is stfE [C]
Identifier: 238028263
GI number: 238028263
Start: 3092042
End: 3094054
Strand: Reverse
Name: stfE [C]
Synonym: bglu_1g27170
Alternate gene names: 238028263
Gene position: 3094054-3092042 (Counterclockwise)
Preceding gene: 238028264
Following gene: 238028262
Centisome position: 79.2
GC content: 62.99
Gene sequence:
>2013_bases ATGGCCAATCTGAAAGAGGACAGTGCCTGGGTAGACGGTATCTACCAGTTGGAAACGTCGGATCCCGTGCAGGGTGGCCC CGATGGTGTCGACAATGTGCAGGCAAAGCAACTTGGGAGTCGCACGCGATACCTGAAGGATCGTGTCGACGCGACCGACA AGCGGGTCGATGCGATGGGGCAAACGGTGGCGGGCCTCGGCACCGACAAGCTTCCCATCGCAGGCGGAGCGATGAAGGGG GCATTGCTGGGAAAGCCCGGCGAAATTACGGCGCTCAACAAGCTGAATGCGGGCTTCGTGTTCGATGAGGATACGGATAC CGGGATGTTCTCGCCGCGTGACGGGTATGTGCAGATCGGAGGGAACGGGGTTTCGCACTTCGAGATTCGCGACGGGAATA CGTTCGTTGGACCGGAGGCCGTCGCTGGTCTGCTCGTGCTCGTCACGGGAGCCGCCGAGCGGGCTCGCATCACATCCGAT GGTCGCATGCTGGTCGGTACGCAAGGGGGCGACGACGGCGTAAGCCGGCTTCAGGTTGCTGGCACGGTTCGAGCAGACGG GGTGGTGTCGGACACGCCGGATGCGGGCGGTGCGCATTTCCGTGCGCGCTATGGCGGCTATGGTGCGTATCTTCGTAACG ACGGATCGAGCGTCTATCTGCTTTCGACGAAAAAGGGCGACCCGTCCGGGCAACCGAACGACTACCGGCCATTCGCGTGG AATCTCGGGACCGGCTACGTCACCATCGATGCCGGTGGCCATGGCACGGCGATCGGCGGCAACGCGACGATTGTTGGCGA TGTGCGGATCGGACACGGCTTGGACGAGGGGCACGCGCGAATCGGCCCCCTAGATGGTTACTTCTATTCGAACAAGACCT CTGTCGGTTGGTGGTCGCCGACAGTCGGATCGTTCCAGTATGTGGCTCAGGACCGAACGTTTCGCGTCGACGGCTACCTC GTCTGGCACAGCGGCAACATGACACCGCTCGATGCCAATAAGGGGGGCGTGATCGGCGGCAATGTGACTTTTGCTGCCGG GCAGCGGCTGTTTCTGGACGAAGGCAGCGCAGCATTCCCTTCGCTCGCGTTCGTGAACGATGGCGTCCCCGATACCGGCT TCTACCACGCTAGAGACGGTGTCTTTGGTGTGACCTGCAATGGCGAGGTCACGGTCACCTTCGCGCAAGAGGCAACCTAT TTCCAGAAACCAGCGGCCGGGCCTTCTCCGGCACCGGACGACAGCTCGCTGCGCTTCGCCACGACGGAGTGGGTCACGGC TGCAATTGGCACTGCATCGATCGGTCAGATCGTCATGGAGGCGCGGACGTCGCCGCGTGCGGGCTATGTGAAGTGCGACG GCTCGCAATACAAACGCGCGGACTATCCGGCGCTGTGGGCCTATGCACAGGCCAGCGGTGCACTGGTATCGGAAGCCGAG TACACGGATGGGCGATGGGGCGGTTTTTCGACCGCCGATGGGCAAACGTACTTCCGTGTTCCGGATCTTCGTGGCGAATT CCTGCGCTGCTGGTCGGACGGACGCGGGGATGTCGATCCCGGCCGCGCAATCGGCTCATTCCAGGGCGGTCAGAACCAGG CCCATGCGCACGGCGCGTCCTCGGATCCCGATGGTGCTCATGTGCATGACGCATGGACTGGTGGTGCCGGTTGGCATAGC CACCACGGCGTGACAGGAGGCGGGGGGATGCACAACCACGCCAATGGGGTGTTTAGTCGGCTGCTGCGTCCGCCTTATCT CGGGTCGCTCACGGGATCAGACACCGATGGCAGTGGTAATGAACAGGCTGTGGGAGGCGGTGATTCGGCAGATATCGCGT GGGCGGGGGAACACCAGCACGAATTCTGGACGGACGGTGCTGGCGATCACGTTCATGCCGTGGGCATCGGCAATGCCGGC GGGCACGCGCACGCGATCCACGTTCAAGCCGATGGCGGCGCCGAAGCGCGTCCGCGCAACGTCGCGTTGCTGGCGATGAT TCGCGCCTATTGA
Upstream 100 bases:
>100_bases CCCGCAGCAGGCTGGCATGGCTGGATTTCTCCGAGGTTGCGATCCGGCACAACGGCGTCGCGACACGCAACGGGCAATTT ACACGAGGGATTATCGGAAC
Downstream 100 bases:
>100_bases TGAGGGAGAAGACATGCTTTGCAACCACTACGACAGACAGACGGGCCAATACCTGAGCAGTACGCTGGCTGATTCGGATC CGAAAGACGACAGCCGATGG
Product: putative phage tail fiber protein
Products: NA
Alternate protein names: Phage-Related Tail Fiber Protein; Tail Collar Domain Protein; Phage Tail Collar Domain-Containing Protein; Bacteriophage Protein; Phage Tail Protein; Phage Tail Collar Domain Family; Tail Fiber-Related Protein; Bacteriophage Large Tail Fiber Protein; Tail Fiber Protein
Number of amino acids: Translated: 670; Mature: 669
Protein sequence:
>670_residues MANLKEDSAWVDGIYQLETSDPVQGGPDGVDNVQAKQLGSRTRYLKDRVDATDKRVDAMGQTVAGLGTDKLPIAGGAMKG ALLGKPGEITALNKLNAGFVFDEDTDTGMFSPRDGYVQIGGNGVSHFEIRDGNTFVGPEAVAGLLVLVTGAAERARITSD GRMLVGTQGGDDGVSRLQVAGTVRADGVVSDTPDAGGAHFRARYGGYGAYLRNDGSSVYLLSTKKGDPSGQPNDYRPFAW NLGTGYVTIDAGGHGTAIGGNATIVGDVRIGHGLDEGHARIGPLDGYFYSNKTSVGWWSPTVGSFQYVAQDRTFRVDGYL VWHSGNMTPLDANKGGVIGGNVTFAAGQRLFLDEGSAAFPSLAFVNDGVPDTGFYHARDGVFGVTCNGEVTVTFAQEATY FQKPAAGPSPAPDDSSLRFATTEWVTAAIGTASIGQIVMEARTSPRAGYVKCDGSQYKRADYPALWAYAQASGALVSEAE YTDGRWGGFSTADGQTYFRVPDLRGEFLRCWSDGRGDVDPGRAIGSFQGGQNQAHAHGASSDPDGAHVHDAWTGGAGWHS HHGVTGGGGMHNHANGVFSRLLRPPYLGSLTGSDTDGSGNEQAVGGGDSADIAWAGEHQHEFWTDGAGDHVHAVGIGNAG GHAHAIHVQADGGAEARPRNVALLAMIRAY
Sequences:
>Translated_670_residues MANLKEDSAWVDGIYQLETSDPVQGGPDGVDNVQAKQLGSRTRYLKDRVDATDKRVDAMGQTVAGLGTDKLPIAGGAMKG ALLGKPGEITALNKLNAGFVFDEDTDTGMFSPRDGYVQIGGNGVSHFEIRDGNTFVGPEAVAGLLVLVTGAAERARITSD GRMLVGTQGGDDGVSRLQVAGTVRADGVVSDTPDAGGAHFRARYGGYGAYLRNDGSSVYLLSTKKGDPSGQPNDYRPFAW NLGTGYVTIDAGGHGTAIGGNATIVGDVRIGHGLDEGHARIGPLDGYFYSNKTSVGWWSPTVGSFQYVAQDRTFRVDGYL VWHSGNMTPLDANKGGVIGGNVTFAAGQRLFLDEGSAAFPSLAFVNDGVPDTGFYHARDGVFGVTCNGEVTVTFAQEATY FQKPAAGPSPAPDDSSLRFATTEWVTAAIGTASIGQIVMEARTSPRAGYVKCDGSQYKRADYPALWAYAQASGALVSEAE YTDGRWGGFSTADGQTYFRVPDLRGEFLRCWSDGRGDVDPGRAIGSFQGGQNQAHAHGASSDPDGAHVHDAWTGGAGWHS HHGVTGGGGMHNHANGVFSRLLRPPYLGSLTGSDTDGSGNEQAVGGGDSADIAWAGEHQHEFWTDGAGDHVHAVGIGNAG GHAHAIHVQADGGAEARPRNVALLAMIRAY >Mature_669_residues ANLKEDSAWVDGIYQLETSDPVQGGPDGVDNVQAKQLGSRTRYLKDRVDATDKRVDAMGQTVAGLGTDKLPIAGGAMKGA LLGKPGEITALNKLNAGFVFDEDTDTGMFSPRDGYVQIGGNGVSHFEIRDGNTFVGPEAVAGLLVLVTGAAERARITSDG RMLVGTQGGDDGVSRLQVAGTVRADGVVSDTPDAGGAHFRARYGGYGAYLRNDGSSVYLLSTKKGDPSGQPNDYRPFAWN LGTGYVTIDAGGHGTAIGGNATIVGDVRIGHGLDEGHARIGPLDGYFYSNKTSVGWWSPTVGSFQYVAQDRTFRVDGYLV WHSGNMTPLDANKGGVIGGNVTFAAGQRLFLDEGSAAFPSLAFVNDGVPDTGFYHARDGVFGVTCNGEVTVTFAQEATYF QKPAAGPSPAPDDSSLRFATTEWVTAAIGTASIGQIVMEARTSPRAGYVKCDGSQYKRADYPALWAYAQASGALVSEAEY TDGRWGGFSTADGQTYFRVPDLRGEFLRCWSDGRGDVDPGRAIGSFQGGQNQAHAHGASSDPDGAHVHDAWTGGAGWHSH HGVTGGGGMHNHANGVFSRLLRPPYLGSLTGSDTDGSGNEQAVGGGDSADIAWAGEHQHEFWTDGAGDHVHAVGIGNAGG HAHAIHVQADGGAEARPRNVALLAMIRAY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69991; Mature: 69860
Theoretical pI: Translated: 5.40; Mature: 5.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANLKEDSAWVDGIYQLETSDPVQGGPDGVDNVQAKQLGSRTRYLKDRVDATDKRVDAMG CCCCCCCCHHCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHC QTVAGLGTDKLPIAGGAMKGALLGKPGEITALNKLNAGFVFDEDTDTGMFSPRDGYVQIG CHHHCCCCCCCEECCCCCCCCEECCCCCEEEEECCCCCEEEECCCCCCCCCCCCCEEEEC GNGVSHFEIRDGNTFVGPEAVAGLLVLVTGAAERARITSDGRMLVGTQGGDDGVSRLQVA CCCCEEEEEECCCEEECHHHHHEEEEEEECCCHHEEECCCCEEEEECCCCCCCCCEEEEE GTVRADGVVSDTPDAGGAHFRARYGGYGAYLRNDGSSVYLLSTKKGDPSGQPNDYRPFAW EEEEECCEECCCCCCCCCEEEEEECCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCEEE NLGTGYVTIDAGGHGTAIGGNATIVGDVRIGHGLDEGHARIGPLDGYFYSNKTSVGWWSP ECCCCEEEEECCCCCEEECCCEEEEEEEEECCCCCCCCCEECCCCCEEECCCCCCCCCCC TVGSFQYVAQDRTFRVDGYLVWHSGNMTPLDANKGGVIGGNVTFAAGQRLFLDEGSAAFP CCCCEEEEECCCEEEEEEEEEEECCCCCEECCCCCCEEECCEEEECCCEEEEECCCCCCC SLAFVNDGVPDTGFYHARDGVFGVTCNGEVTVTFAQEATYFQKPAAGPSPAPDDSSLRFA EEEEECCCCCCCCEEEECCCEEEEEECCEEEEEEECCCHHHCCCCCCCCCCCCCCCEEEE TTEWVTAAIGTASIGQIVMEARTSPRAGYVKCDGSQYKRADYPALWAYAQASGALVSEAE EHHHHHHHHCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCEEECCC YTDGRWGGFSTADGQTYFRVPDLRGEFLRCWSDGRGDVDPGRAIGSFQGGQNQAHAHGAS CCCCCCCCCCCCCCCEEEECCCCCCHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCC SDPDGAHVHDAWTGGAGWHSHHGVTGGGGMHNHANGVFSRLLRPPYLGSLTGSDTDGSGN CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC EQAVGGGDSADIAWAGEHQHEFWTDGAGDHVHAVGIGNAGGHAHAIHVQADGGAEARPRN CCCCCCCCCCCEEECCCCCCCEECCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCCC VALLAMIRAY EEEEEEEECC >Mature Secondary Structure ANLKEDSAWVDGIYQLETSDPVQGGPDGVDNVQAKQLGSRTRYLKDRVDATDKRVDAMG CCCCCCCHHCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHC QTVAGLGTDKLPIAGGAMKGALLGKPGEITALNKLNAGFVFDEDTDTGMFSPRDGYVQIG CHHHCCCCCCCEECCCCCCCCEECCCCCEEEEECCCCCEEEECCCCCCCCCCCCCEEEEC GNGVSHFEIRDGNTFVGPEAVAGLLVLVTGAAERARITSDGRMLVGTQGGDDGVSRLQVA CCCCEEEEEECCCEEECHHHHHEEEEEEECCCHHEEECCCCEEEEECCCCCCCCCEEEEE GTVRADGVVSDTPDAGGAHFRARYGGYGAYLRNDGSSVYLLSTKKGDPSGQPNDYRPFAW EEEEECCEECCCCCCCCCEEEEEECCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCEEE NLGTGYVTIDAGGHGTAIGGNATIVGDVRIGHGLDEGHARIGPLDGYFYSNKTSVGWWSP ECCCCEEEEECCCCCEEECCCEEEEEEEEECCCCCCCCCEECCCCCEEECCCCCCCCCCC TVGSFQYVAQDRTFRVDGYLVWHSGNMTPLDANKGGVIGGNVTFAAGQRLFLDEGSAAFP CCCCEEEEECCCEEEEEEEEEEECCCCCEECCCCCCEEECCEEEECCCEEEEECCCCCCC SLAFVNDGVPDTGFYHARDGVFGVTCNGEVTVTFAQEATYFQKPAAGPSPAPDDSSLRFA EEEEECCCCCCCCEEEECCCEEEEEECCEEEEEEECCCHHHCCCCCCCCCCCCCCCEEEE TTEWVTAAIGTASIGQIVMEARTSPRAGYVKCDGSQYKRADYPALWAYAQASGALVSEAE EHHHHHHHHCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCEEECCC YTDGRWGGFSTADGQTYFRVPDLRGEFLRCWSDGRGDVDPGRAIGSFQGGQNQAHAHGAS CCCCCCCCCCCCCCCEEEECCCCCCHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCC SDPDGAHVHDAWTGGAGWHSHHGVTGGGGMHNHANGVFSRLLRPPYLGSLTGSDTDGSGN CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC EQAVGGGDSADIAWAGEHQHEFWTDGAGDHVHAVGIGNAGGHAHAIHVQADGGAEARPRN CCCCCCCCCCCEEECCCCCCCEECCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCCC VALLAMIRAY EEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA