| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238028256
Identifier: 238028256
GI number: 238028256
Start: 3084901
End: 3085779
Strand: Reverse
Name: 238028256
Synonym: bglu_1g27100
Alternate gene names: NA
Gene position: 3085779-3084901 (Counterclockwise)
Preceding gene: 238028257
Following gene: 238028255
Centisome position: 78.99
GC content: 65.64
Gene sequence:
>879_bases ATGGACCTGATCAGACAGATCACGTCGGCCGCGACGCAGGCGAGTGTCGCCTCGGAGCGCGTCCGGCAGATGGTGCGCGT CGCCGATCGCAACCGGGCCGCGAGCGCGACAACGGTCGAGACGTTGCAAAAGCTCGCGACCGGCAATCTCAGCAGCGCGG CCGAGTTGCTGACCGGTGCCAAGAGCGCGATGTCAGTCGCTGGTGATCTGTTCCCCCAAGTCGGGATCGTGACGCGCAGC TTCAACGCCACGCAGGCGTCGGTCGGCTCGATCCTGAAGATGGCGGACAGTTCGAGCTTTCCGCTCGTTCGCTCGGCCGC CGATAGCGTCAAATCGGCACTTGGCGGGGCAGTGAACCAGTTCTCGAGCTTGGTCGGCATCAAGGACAAGGCGGCGGCCG ACGCGGACAAGGCGACGAGCCTGAGTTCGTTGTTACCAGGGCTGGCCGATGGTGCGACGTCGAGCACGCCGCACTTGATG ACGATGGCGGCCGACGACGGCAGCGCGTTCCATTTCAACCTGTCCACGGCCGCGTTCGAGAAGCTTCGGCGGGCGACGCG ATACCGCGTCGCCACGCAGGAGCGCTTGAACCGGCAGGAGGCGTTGCAGCCGGTCAGCGAGGGCGGCGAGACGATCACCT TGTCCGGCGTCGTCTTCCCCACCCTGGGTGCCGGCACGACGCAGATCAGCAAGCTGCGTGCGATCGGCAGCCGCATGAAG CCGGTGCGGCTCACGACGGGCAGCGGCGAAGTGCTGGGCCGCTGGCTGCTGCAGACGATCGAGGAGGAGCAGGACGCCAT GCTGGCCGATGGTCTGCCCCGCAAGCAATCCTTCACTGTGGAGTTTGGCCGCTATGGCGAAGATTTTAAGAACGTCTGA
Upstream 100 bases:
>100_bases GCGGGTCAGTCCGACGTTGACGCGGATGATGGCCGAGCAGCAGCGCAAGACAACCAACTTTTCGGCGATGTTTGATGCGC CGCATCTATGAGGGTAAAGC
Downstream 100 bases:
>100_bases GGGGGACGTGCTCGATACCTTGTGCTATCGGGCGTACGGAACGCTGCAGGGCACGGTAGAGGCTGTTTACGAGGCGAATC CCGGCCTTGCCGCGAGACCG
Product: phage P2 GpU family protein
Products: NA
Alternate protein names: Phage-Related Tail Protein; Phage P2 GpU; Phage P2 GpU Family Protein; Phage Tail Protein; Pyocin R2_PP Tail Formation Protein; Phage Protein U; Phage Tail Protein U; Bacteriophage P2 Phage-Related Tail U Protein; Pyocin R2_PP Tail Formation Protein GpU; Tail Fiber Protein; Phage Tail; Tail Protein
Number of amino acids: Translated: 292; Mature: 292
Protein sequence:
>292_residues MDLIRQITSAATQASVASERVRQMVRVADRNRAASATTVETLQKLATGNLSSAAELLTGAKSAMSVAGDLFPQVGIVTRS FNATQASVGSILKMADSSSFPLVRSAADSVKSALGGAVNQFSSLVGIKDKAAADADKATSLSSLLPGLADGATSSTPHLM TMAADDGSAFHFNLSTAAFEKLRRATRYRVATQERLNRQEALQPVSEGGETITLSGVVFPTLGAGTTQISKLRAIGSRMK PVRLTTGSGEVLGRWLLQTIEEEQDAMLADGLPRKQSFTVEFGRYGEDFKNV
Sequences:
>Translated_292_residues MDLIRQITSAATQASVASERVRQMVRVADRNRAASATTVETLQKLATGNLSSAAELLTGAKSAMSVAGDLFPQVGIVTRS FNATQASVGSILKMADSSSFPLVRSAADSVKSALGGAVNQFSSLVGIKDKAAADADKATSLSSLLPGLADGATSSTPHLM TMAADDGSAFHFNLSTAAFEKLRRATRYRVATQERLNRQEALQPVSEGGETITLSGVVFPTLGAGTTQISKLRAIGSRMK PVRLTTGSGEVLGRWLLQTIEEEQDAMLADGLPRKQSFTVEFGRYGEDFKNV >Mature_292_residues MDLIRQITSAATQASVASERVRQMVRVADRNRAASATTVETLQKLATGNLSSAAELLTGAKSAMSVAGDLFPQVGIVTRS FNATQASVGSILKMADSSSFPLVRSAADSVKSALGGAVNQFSSLVGIKDKAAADADKATSLSSLLPGLADGATSSTPHLM TMAADDGSAFHFNLSTAAFEKLRRATRYRVATQERLNRQEALQPVSEGGETITLSGVVFPTLGAGTTQISKLRAIGSRMK PVRLTTGSGEVLGRWLLQTIEEEQDAMLADGLPRKQSFTVEFGRYGEDFKNV
Specific function: Unknown
COG id: COG3499
COG function: function code R; Phage protein U
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30775; Mature: 30775
Theoretical pI: Translated: 10.09; Mature: 10.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLIRQITSAATQASVASERVRQMVRVADRNRAASATTVETLQKLATGNLSSAAELLTGA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH KSAMSVAGDLFPQVGIVTRSFNATQASVGSILKMADSSSFPLVRSAADSVKSALGGAVNQ HHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH FSSLVGIKDKAAADADKATSLSSLLPGLADGATSSTPHLMTMAADDGSAFHFNLSTAAFE HHHHHCCCHHHHCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEEECHHHHHH KLRRATRYRVATQERLNRQEALQPVSEGGETITLSGVVFPTLGAGTTQISKLRAIGSRMK HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCHHHHHHHHHHHHCCC PVRLTTGSGEVLGRWLLQTIEEEQDAMLADGLPRKQSFTVEFGRYGEDFKNV CEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHCCC >Mature Secondary Structure MDLIRQITSAATQASVASERVRQMVRVADRNRAASATTVETLQKLATGNLSSAAELLTGA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH KSAMSVAGDLFPQVGIVTRSFNATQASVGSILKMADSSSFPLVRSAADSVKSALGGAVNQ HHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH FSSLVGIKDKAAADADKATSLSSLLPGLADGATSSTPHLMTMAADDGSAFHFNLSTAAFE HHHHHCCCHHHHCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEEECHHHHHH KLRRATRYRVATQERLNRQEALQPVSEGGETITLSGVVFPTLGAGTTQISKLRAIGSRMK HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCHHHHHHHHHHHHCCC PVRLTTGSGEVLGRWLLQTIEEEQDAMLADGLPRKQSFTVEFGRYGEDFKNV CEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA