The gene/protein map for NC_012724 is currently unavailable.
Definition Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence.
Accession NC_012724
Length 3,906,507

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The map label for this gene is uup-A [H]

Identifier: 238028240

GI number: 238028240

Start: 3070367

End: 3072334

Strand: Reverse

Name: uup-A [H]

Synonym: bglu_1g26940

Alternate gene names: 238028240

Gene position: 3072334-3070367 (Counterclockwise)

Preceding gene: 238028241

Following gene: 238028239

Centisome position: 78.65

GC content: 69.56

Gene sequence:

>1968_bases
ATGTCGCTCTATTCCATTACCGGCGCGCAGCTTGCGTTCGGTCACGTCGCGTTGCTGGATCACGCGGATTTCTCGCTCGA
AGCTGGCGAGCGCGTCGGTTTGATCGGCCGCAACGGCGCGGGCAAGTCGTCGCTGCTGAAGATCGTCGCGGAGCTCGCAC
GCCCCGACGACGGCCTGGTCACGCGCCAGCAGGATCTGGTGACGGTCTACGTGTCGCAGGAGCCCGAGTTCGAGCCGGGG
CAGTCGGTGTTCGACGCGGTGGCCTCGGGCCTCGCGCACACGCAGGCGCTGCTCGACGAGTTCGACACGATCGCGCACCG
CCTCGCGGACGCGCCGGAGGGCGCGGAGCACGACGCGCTGCTGGCGCGCATGAACACGCTGCAATCGGCACTCGACACGG
CCGATGCCTGGAACTGGCGCACCCGCGTGGCCACCACGCTCGCGCAGATCGGCCTGGATGGCGCGAACCGGGTGGAGGCG
CTGTCGGGCGGGATGAAAAAGCGCGTCGCGCTGGCCCGCGCGCTGGTGCTGCAGCCGGACGTGCTGCTGCTCGACGAGCC
GACCAATCACCTCGATTTCGAAGGCATCCGCTGGCTGGAGGAACTGCTGATCTCGCAGCGCTCGAGCGTGCTGTTCATCA
CCCACGATCGGGCCTTCCTCGACCGCGTCGCCACCCGCATCGTCGAGCTCGATCGCGGCCGCCTGCTGTCCTATCCGGGC
AACTTCTCGGCCTATCAGACGCGCAAGGCGCAGCAGCTCGAAGTCGAGCGGGTGGAGAACGAGAAGTTCGACAAGCTGCT
CGCCCAGGAGGAAGTGTGGATCCGCAAGGGCGTGGAGGCGCGCCGCACGCGCAGCGTGGGCCGCATCGCGCGGCTGGTGC
AGATGCGTGCGGAGCGCGAGGAGCGCCGCTCGACGCAGGGCAACGTGCGTTTGGACGTGGCGCAGGGCGAGAAGTCGGGC
AAGATCGTGGCGGAGCTGACCGACGTGACGGTCCGCTACGACGGCCGCACCTACATCGACCGCTTCACGGCAACGGTGAT
GCGCGGCGACAAGATCGGCCTGATCGGCCCGAACGGCGTGGGCAAGACGACCATGCTCAAGCTGATCCTCGGCGAGCTGA
CGCCGGACGAGGGCAAGGTGCGCACCGGCACCAACCTGCAGGTGGCCTACTTCGACCAGATGCGCGCGCAGCTCGACCTC
GACCGGAGCCTGGCCGACACCATCAGCCCGGGCAGCGAGTGGGTGGAGATCGGCGGCGCGAAGAAGCACGTGATGAGCTA
CCTCGGCGATTTCCTGTTCGCGCCCGAGCGGGCGCGCTCGCCGGTGCGCTCGCTGTCGGGCGGCGAGCGCAACCGCCTGC
TGCTGGCGCGCTTGTTCGCGCGGCCGGCCAACGTGCTGGTGCTCGACGAGCCGACCAACGACCTCGACATCCCGACGCTC
GAACTGCTCGAAGAACTGCTGGCCGACTACGACGGCACGGTGCTGCTGGTCAGCCACGATCGCGCCTTCCTCGACAACGT
CGTGACCTCGGTGATCGCCTCGGAGGGCGACGGCCGCTGGCGCGAATACGTGGGCGGCTTCTCGGACTGGCAGGTGCAGC
GCACGCGTGCCGACGAGCTTGCCCAGCAGGACGCGGCCCGGCGCACGCCGCGCGAGGCCGCGCCGAAGGACGAGGCCGGC
AAGGGCGCGGCGGCCGGAGCCGGCGCGCCGGCCGCCGGCCGTAACGCGCAGCGCACGGTCAAGCTCTCGTTCAACGAGCA
GCGCGAGCTCGACGCGCTGCCGGAACGGATCGCGGCGCTCGAGGCCGAGCAGAAGGCGATCAACGAAAAACTCGAGGACG
GCTCGATCTTCGCGCGCGACGCGAAGGAGGGCACGCGGCTGACGGAGCGCTTCGCGGCGCTCGACGACGAGCTGCTTGCG
GCACTGGAGCGCTGGGAGGAACTGGAGGCCAAGCGCAAGCCGTCATGA

Upstream 100 bases:

>100_bases
TCGCGCGCTGCGGCCGCGCTGGCCGACCGGCCGGTACGGCGCCCGGCCCGATGCCCGTTACAATGGGCGTTTCCGAATCC
TTCTCTTCGCCGTCTTCCCC

Downstream 100 bases:

>100_bases
GCGCGCACGCAAGGAACCAGTAAAATACGCCGCGTTCCGGCCCCCGGTGCTGCTTGCGGCGCCGGCGTGCCCTGCGCCGT
CGGAGCGGTCGCGTAACCGC

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 655; Mature: 654

Protein sequence:

>655_residues
MSLYSITGAQLAFGHVALLDHADFSLEAGERVGLIGRNGAGKSSLLKIVAELARPDDGLVTRQQDLVTVYVSQEPEFEPG
QSVFDAVASGLAHTQALLDEFDTIAHRLADAPEGAEHDALLARMNTLQSALDTADAWNWRTRVATTLAQIGLDGANRVEA
LSGGMKKRVALARALVLQPDVLLLDEPTNHLDFEGIRWLEELLISQRSSVLFITHDRAFLDRVATRIVELDRGRLLSYPG
NFSAYQTRKAQQLEVERVENEKFDKLLAQEEVWIRKGVEARRTRSVGRIARLVQMRAEREERRSTQGNVRLDVAQGEKSG
KIVAELTDVTVRYDGRTYIDRFTATVMRGDKIGLIGPNGVGKTTMLKLILGELTPDEGKVRTGTNLQVAYFDQMRAQLDL
DRSLADTISPGSEWVEIGGAKKHVMSYLGDFLFAPERARSPVRSLSGGERNRLLLARLFARPANVLVLDEPTNDLDIPTL
ELLEELLADYDGTVLLVSHDRAFLDNVVTSVIASEGDGRWREYVGGFSDWQVQRTRADELAQQDAARRTPREAAPKDEAG
KGAAAGAGAPAAGRNAQRTVKLSFNEQRELDALPERIAALEAEQKAINEKLEDGSIFARDAKEGTRLTERFAALDDELLA
ALERWEELEAKRKPS

Sequences:

>Translated_655_residues
MSLYSITGAQLAFGHVALLDHADFSLEAGERVGLIGRNGAGKSSLLKIVAELARPDDGLVTRQQDLVTVYVSQEPEFEPG
QSVFDAVASGLAHTQALLDEFDTIAHRLADAPEGAEHDALLARMNTLQSALDTADAWNWRTRVATTLAQIGLDGANRVEA
LSGGMKKRVALARALVLQPDVLLLDEPTNHLDFEGIRWLEELLISQRSSVLFITHDRAFLDRVATRIVELDRGRLLSYPG
NFSAYQTRKAQQLEVERVENEKFDKLLAQEEVWIRKGVEARRTRSVGRIARLVQMRAEREERRSTQGNVRLDVAQGEKSG
KIVAELTDVTVRYDGRTYIDRFTATVMRGDKIGLIGPNGVGKTTMLKLILGELTPDEGKVRTGTNLQVAYFDQMRAQLDL
DRSLADTISPGSEWVEIGGAKKHVMSYLGDFLFAPERARSPVRSLSGGERNRLLLARLFARPANVLVLDEPTNDLDIPTL
ELLEELLADYDGTVLLVSHDRAFLDNVVTSVIASEGDGRWREYVGGFSDWQVQRTRADELAQQDAARRTPREAAPKDEAG
KGAAAGAGAPAAGRNAQRTVKLSFNEQRELDALPERIAALEAEQKAINEKLEDGSIFARDAKEGTRLTERFAALDDELLA
ALERWEELEAKRKPS
>Mature_654_residues
SLYSITGAQLAFGHVALLDHADFSLEAGERVGLIGRNGAGKSSLLKIVAELARPDDGLVTRQQDLVTVYVSQEPEFEPGQ
SVFDAVASGLAHTQALLDEFDTIAHRLADAPEGAEHDALLARMNTLQSALDTADAWNWRTRVATTLAQIGLDGANRVEAL
SGGMKKRVALARALVLQPDVLLLDEPTNHLDFEGIRWLEELLISQRSSVLFITHDRAFLDRVATRIVELDRGRLLSYPGN
FSAYQTRKAQQLEVERVENEKFDKLLAQEEVWIRKGVEARRTRSVGRIARLVQMRAEREERRSTQGNVRLDVAQGEKSGK
IVAELTDVTVRYDGRTYIDRFTATVMRGDKIGLIGPNGVGKTTMLKLILGELTPDEGKVRTGTNLQVAYFDQMRAQLDLD
RSLADTISPGSEWVEIGGAKKHVMSYLGDFLFAPERARSPVRSLSGGERNRLLLARLFARPANVLVLDEPTNDLDIPTLE
LLEELLADYDGTVLLVSHDRAFLDNVVTSVIASEGDGRWREYVGGFSDWQVQRTRADELAQQDAARRTPREAAPKDEAGK
GAAAGAGAPAAGRNAQRTVKLSFNEQRELDALPERIAALEAEQKAINEKLEDGSIFARDAKEGTRLTERFAALDDELLAA
LERWEELEAKRKPS

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=536, Percent_Identity=32.2761194029851, Blast_Score=224, Evalue=2e-58,
Organism=Homo sapiens, GI10947137, Length=527, Percent_Identity=30.1707779886148, Blast_Score=196, Evalue=7e-50,
Organism=Homo sapiens, GI27881506, Length=527, Percent_Identity=30.1707779886148, Blast_Score=196, Evalue=8e-50,
Organism=Homo sapiens, GI69354671, Length=540, Percent_Identity=30.1851851851852, Blast_Score=182, Evalue=7e-46,
Organism=Homo sapiens, GI10947135, Length=540, Percent_Identity=30.1851851851852, Blast_Score=182, Evalue=7e-46,
Organism=Escherichia coli, GI1787182, Length=650, Percent_Identity=46.1538461538462, Blast_Score=541, Evalue=1e-155,
Organism=Escherichia coli, GI2367384, Length=520, Percent_Identity=34.6153846153846, Blast_Score=318, Evalue=5e-88,
Organism=Escherichia coli, GI1787041, Length=529, Percent_Identity=31.0018903591682, Blast_Score=252, Evalue=6e-68,
Organism=Escherichia coli, GI1789751, Length=671, Percent_Identity=30.2533532041729, Blast_Score=252, Evalue=6e-68,
Organism=Escherichia coli, GI1788165, Length=189, Percent_Identity=35.4497354497354, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1789891, Length=251, Percent_Identity=28.6852589641434, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788761, Length=244, Percent_Identity=29.9180327868852, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1787792, Length=528, Percent_Identity=23.2954545454545, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1789864, Length=247, Percent_Identity=29.1497975708502, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI145693107, Length=563, Percent_Identity=22.5577264653641, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1788225, Length=247, Percent_Identity=27.9352226720648, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1789672, Length=245, Percent_Identity=25.7142857142857, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI1786253, Length=216, Percent_Identity=31.4814814814815, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1789873, Length=219, Percent_Identity=32.4200913242009, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787029, Length=237, Percent_Identity=26.1603375527426, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI1787164, Length=234, Percent_Identity=29.9145299145299, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI1790544, Length=269, Percent_Identity=29.7397769516729, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1786872, Length=232, Percent_Identity=27.5862068965517, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788506, Length=236, Percent_Identity=27.5423728813559, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787758, Length=183, Percent_Identity=26.2295081967213, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1790739, Length=236, Percent_Identity=28.8135593220339, Blast_Score=67, Evalue=5e-12,
Organism=Escherichia coli, GI1790162, Length=249, Percent_Identity=25.3012048192771, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI87081791, Length=208, Percent_Identity=26.4423076923077, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1788644, Length=134, Percent_Identity=31.3432835820896, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1786345, Length=204, Percent_Identity=32.3529411764706, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=537, Percent_Identity=28.6778398510242, Blast_Score=208, Evalue=7e-54,
Organism=Caenorhabditis elegans, GI17553372, Length=520, Percent_Identity=32.8846153846154, Blast_Score=200, Evalue=2e-51,
Organism=Caenorhabditis elegans, GI17555318, Length=530, Percent_Identity=28.6792452830189, Blast_Score=187, Evalue=1e-47,
Organism=Caenorhabditis elegans, GI17511077, Length=253, Percent_Identity=29.2490118577075, Blast_Score=74, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI212646699, Length=227, Percent_Identity=25.9911894273128, Blast_Score=66, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6320874, Length=540, Percent_Identity=30.3703703703704, Blast_Score=219, Evalue=9e-58,
Organism=Saccharomyces cerevisiae, GI6321121, Length=539, Percent_Identity=30.4267161410019, Blast_Score=195, Evalue=2e-50,
Organism=Saccharomyces cerevisiae, GI6325030, Length=398, Percent_Identity=29.8994974874372, Blast_Score=157, Evalue=6e-39,
Organism=Saccharomyces cerevisiae, GI6324314, Length=408, Percent_Identity=28.1862745098039, Blast_Score=132, Evalue=1e-31,
Organism=Saccharomyces cerevisiae, GI6323278, Length=408, Percent_Identity=26.7156862745098, Blast_Score=126, Evalue=1e-29,
Organism=Drosophila melanogaster, GI24666836, Length=538, Percent_Identity=30.6691449814126, Blast_Score=218, Evalue=1e-56,
Organism=Drosophila melanogaster, GI24642252, Length=548, Percent_Identity=29.9270072992701, Blast_Score=209, Evalue=4e-54,
Organism=Drosophila melanogaster, GI18859989, Length=548, Percent_Identity=29.9270072992701, Blast_Score=209, Evalue=4e-54,
Organism=Drosophila melanogaster, GI24641342, Length=534, Percent_Identity=28.2771535580524, Blast_Score=194, Evalue=1e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 72390; Mature: 72258

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLYSITGAQLAFGHVALLDHADFSLEAGERVGLIGRNGAGKSSLLKIVAELARPDDGLV
CCCEECCCCHHHHHHEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCE
TRQQDLVTVYVSQEPEFEPGQSVFDAVASGLAHTQALLDEFDTIAHRLADAPEGAEHDAL
ECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
LARMNTLQSALDTADAWNWRTRVATTLAQIGLDGANRVEALSGGMKKRVALARALVLQPD
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHCCCC
VLLLDEPTNHLDFEGIRWLEELLISQRSSVLFITHDRAFLDRVATRIVELDRGRLLSYPG
EEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEECCCC
NFSAYQTRKAQQLEVERVENEKFDKLLAQEEVWIRKGVEARRTRSVGRIARLVQMRAERE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
ERRSTQGNVRLDVAQGEKSGKIVAELTDVTVRYDGRTYIDRFTATVMRGDKIGLIGPNGV
HHHCCCCCEEEEEECCCCCCCEEEEEEEEEEEECCCHHHHHHHHHHHCCCEEEEECCCCC
GKTTMLKLILGELTPDEGKVRTGTNLQVAYFDQMRAQLDLDRSLADTISPGSEWVEIGGA
CHHHHHHHHHHHCCCCCCCEECCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCH
KKHVMSYLGDFLFAPERARSPVRSLSGGERNRLLLARLFARPANVLVLDEPTNDLDIPTL
HHHHHHHHHHHHCCCHHHHCHHHHCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCHH
ELLEELLADYDGTVLLVSHDRAFLDNVVTSVIASEGDGRWREYVGGFSDWQVQRTRADEL
HHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHH
AQQDAARRTPREAAPKDEAGKGAAAGAGAPAAGRNAQRTVKLSFNEQRELDALPERIAAL
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHH
EAEQKAINEKLEDGSIFARDAKEGTRLTERFAALDDELLAALERWEELEAKRKPS
HHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SLYSITGAQLAFGHVALLDHADFSLEAGERVGLIGRNGAGKSSLLKIVAELARPDDGLV
CCEECCCCHHHHHHEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCE
TRQQDLVTVYVSQEPEFEPGQSVFDAVASGLAHTQALLDEFDTIAHRLADAPEGAEHDAL
ECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
LARMNTLQSALDTADAWNWRTRVATTLAQIGLDGANRVEALSGGMKKRVALARALVLQPD
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHCCCC
VLLLDEPTNHLDFEGIRWLEELLISQRSSVLFITHDRAFLDRVATRIVELDRGRLLSYPG
EEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEECCCC
NFSAYQTRKAQQLEVERVENEKFDKLLAQEEVWIRKGVEARRTRSVGRIARLVQMRAERE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
ERRSTQGNVRLDVAQGEKSGKIVAELTDVTVRYDGRTYIDRFTATVMRGDKIGLIGPNGV
HHHCCCCCEEEEEECCCCCCCEEEEEEEEEEEECCCHHHHHHHHHHHCCCEEEEECCCCC
GKTTMLKLILGELTPDEGKVRTGTNLQVAYFDQMRAQLDLDRSLADTISPGSEWVEIGGA
CHHHHHHHHHHHCCCCCCCEECCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCH
KKHVMSYLGDFLFAPERARSPVRSLSGGERNRLLLARLFARPANVLVLDEPTNDLDIPTL
HHHHHHHHHHHHCCCHHHHCHHHHCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCHH
ELLEELLADYDGTVLLVSHDRAFLDNVVTSVIASEGDGRWREYVGGFSDWQVQRTRADEL
HHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHH
AQQDAARRTPREAAPKDEAGKGAAAGAGAPAAGRNAQRTVKLSFNEQRELDALPERIAAL
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHH
EAEQKAINEKLEDGSIFARDAKEGTRLTERFAALDDELLAALERWEELEAKRKPS
HHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Endonuclease; Excision [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]