| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is uup-A [H]
Identifier: 238028240
GI number: 238028240
Start: 3070367
End: 3072334
Strand: Reverse
Name: uup-A [H]
Synonym: bglu_1g26940
Alternate gene names: 238028240
Gene position: 3072334-3070367 (Counterclockwise)
Preceding gene: 238028241
Following gene: 238028239
Centisome position: 78.65
GC content: 69.56
Gene sequence:
>1968_bases ATGTCGCTCTATTCCATTACCGGCGCGCAGCTTGCGTTCGGTCACGTCGCGTTGCTGGATCACGCGGATTTCTCGCTCGA AGCTGGCGAGCGCGTCGGTTTGATCGGCCGCAACGGCGCGGGCAAGTCGTCGCTGCTGAAGATCGTCGCGGAGCTCGCAC GCCCCGACGACGGCCTGGTCACGCGCCAGCAGGATCTGGTGACGGTCTACGTGTCGCAGGAGCCCGAGTTCGAGCCGGGG CAGTCGGTGTTCGACGCGGTGGCCTCGGGCCTCGCGCACACGCAGGCGCTGCTCGACGAGTTCGACACGATCGCGCACCG CCTCGCGGACGCGCCGGAGGGCGCGGAGCACGACGCGCTGCTGGCGCGCATGAACACGCTGCAATCGGCACTCGACACGG CCGATGCCTGGAACTGGCGCACCCGCGTGGCCACCACGCTCGCGCAGATCGGCCTGGATGGCGCGAACCGGGTGGAGGCG CTGTCGGGCGGGATGAAAAAGCGCGTCGCGCTGGCCCGCGCGCTGGTGCTGCAGCCGGACGTGCTGCTGCTCGACGAGCC GACCAATCACCTCGATTTCGAAGGCATCCGCTGGCTGGAGGAACTGCTGATCTCGCAGCGCTCGAGCGTGCTGTTCATCA CCCACGATCGGGCCTTCCTCGACCGCGTCGCCACCCGCATCGTCGAGCTCGATCGCGGCCGCCTGCTGTCCTATCCGGGC AACTTCTCGGCCTATCAGACGCGCAAGGCGCAGCAGCTCGAAGTCGAGCGGGTGGAGAACGAGAAGTTCGACAAGCTGCT CGCCCAGGAGGAAGTGTGGATCCGCAAGGGCGTGGAGGCGCGCCGCACGCGCAGCGTGGGCCGCATCGCGCGGCTGGTGC AGATGCGTGCGGAGCGCGAGGAGCGCCGCTCGACGCAGGGCAACGTGCGTTTGGACGTGGCGCAGGGCGAGAAGTCGGGC AAGATCGTGGCGGAGCTGACCGACGTGACGGTCCGCTACGACGGCCGCACCTACATCGACCGCTTCACGGCAACGGTGAT GCGCGGCGACAAGATCGGCCTGATCGGCCCGAACGGCGTGGGCAAGACGACCATGCTCAAGCTGATCCTCGGCGAGCTGA CGCCGGACGAGGGCAAGGTGCGCACCGGCACCAACCTGCAGGTGGCCTACTTCGACCAGATGCGCGCGCAGCTCGACCTC GACCGGAGCCTGGCCGACACCATCAGCCCGGGCAGCGAGTGGGTGGAGATCGGCGGCGCGAAGAAGCACGTGATGAGCTA CCTCGGCGATTTCCTGTTCGCGCCCGAGCGGGCGCGCTCGCCGGTGCGCTCGCTGTCGGGCGGCGAGCGCAACCGCCTGC TGCTGGCGCGCTTGTTCGCGCGGCCGGCCAACGTGCTGGTGCTCGACGAGCCGACCAACGACCTCGACATCCCGACGCTC GAACTGCTCGAAGAACTGCTGGCCGACTACGACGGCACGGTGCTGCTGGTCAGCCACGATCGCGCCTTCCTCGACAACGT CGTGACCTCGGTGATCGCCTCGGAGGGCGACGGCCGCTGGCGCGAATACGTGGGCGGCTTCTCGGACTGGCAGGTGCAGC GCACGCGTGCCGACGAGCTTGCCCAGCAGGACGCGGCCCGGCGCACGCCGCGCGAGGCCGCGCCGAAGGACGAGGCCGGC AAGGGCGCGGCGGCCGGAGCCGGCGCGCCGGCCGCCGGCCGTAACGCGCAGCGCACGGTCAAGCTCTCGTTCAACGAGCA GCGCGAGCTCGACGCGCTGCCGGAACGGATCGCGGCGCTCGAGGCCGAGCAGAAGGCGATCAACGAAAAACTCGAGGACG GCTCGATCTTCGCGCGCGACGCGAAGGAGGGCACGCGGCTGACGGAGCGCTTCGCGGCGCTCGACGACGAGCTGCTTGCG GCACTGGAGCGCTGGGAGGAACTGGAGGCCAAGCGCAAGCCGTCATGA
Upstream 100 bases:
>100_bases TCGCGCGCTGCGGCCGCGCTGGCCGACCGGCCGGTACGGCGCCCGGCCCGATGCCCGTTACAATGGGCGTTTCCGAATCC TTCTCTTCGCCGTCTTCCCC
Downstream 100 bases:
>100_bases GCGCGCACGCAAGGAACCAGTAAAATACGCCGCGTTCCGGCCCCCGGTGCTGCTTGCGGCGCCGGCGTGCCCTGCGCCGT CGGAGCGGTCGCGTAACCGC
Product: ABC transporter-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 655; Mature: 654
Protein sequence:
>655_residues MSLYSITGAQLAFGHVALLDHADFSLEAGERVGLIGRNGAGKSSLLKIVAELARPDDGLVTRQQDLVTVYVSQEPEFEPG QSVFDAVASGLAHTQALLDEFDTIAHRLADAPEGAEHDALLARMNTLQSALDTADAWNWRTRVATTLAQIGLDGANRVEA LSGGMKKRVALARALVLQPDVLLLDEPTNHLDFEGIRWLEELLISQRSSVLFITHDRAFLDRVATRIVELDRGRLLSYPG NFSAYQTRKAQQLEVERVENEKFDKLLAQEEVWIRKGVEARRTRSVGRIARLVQMRAEREERRSTQGNVRLDVAQGEKSG KIVAELTDVTVRYDGRTYIDRFTATVMRGDKIGLIGPNGVGKTTMLKLILGELTPDEGKVRTGTNLQVAYFDQMRAQLDL DRSLADTISPGSEWVEIGGAKKHVMSYLGDFLFAPERARSPVRSLSGGERNRLLLARLFARPANVLVLDEPTNDLDIPTL ELLEELLADYDGTVLLVSHDRAFLDNVVTSVIASEGDGRWREYVGGFSDWQVQRTRADELAQQDAARRTPREAAPKDEAG KGAAAGAGAPAAGRNAQRTVKLSFNEQRELDALPERIAALEAEQKAINEKLEDGSIFARDAKEGTRLTERFAALDDELLA ALERWEELEAKRKPS
Sequences:
>Translated_655_residues MSLYSITGAQLAFGHVALLDHADFSLEAGERVGLIGRNGAGKSSLLKIVAELARPDDGLVTRQQDLVTVYVSQEPEFEPG QSVFDAVASGLAHTQALLDEFDTIAHRLADAPEGAEHDALLARMNTLQSALDTADAWNWRTRVATTLAQIGLDGANRVEA LSGGMKKRVALARALVLQPDVLLLDEPTNHLDFEGIRWLEELLISQRSSVLFITHDRAFLDRVATRIVELDRGRLLSYPG NFSAYQTRKAQQLEVERVENEKFDKLLAQEEVWIRKGVEARRTRSVGRIARLVQMRAEREERRSTQGNVRLDVAQGEKSG KIVAELTDVTVRYDGRTYIDRFTATVMRGDKIGLIGPNGVGKTTMLKLILGELTPDEGKVRTGTNLQVAYFDQMRAQLDL DRSLADTISPGSEWVEIGGAKKHVMSYLGDFLFAPERARSPVRSLSGGERNRLLLARLFARPANVLVLDEPTNDLDIPTL ELLEELLADYDGTVLLVSHDRAFLDNVVTSVIASEGDGRWREYVGGFSDWQVQRTRADELAQQDAARRTPREAAPKDEAG KGAAAGAGAPAAGRNAQRTVKLSFNEQRELDALPERIAALEAEQKAINEKLEDGSIFARDAKEGTRLTERFAALDDELLA ALERWEELEAKRKPS >Mature_654_residues SLYSITGAQLAFGHVALLDHADFSLEAGERVGLIGRNGAGKSSLLKIVAELARPDDGLVTRQQDLVTVYVSQEPEFEPGQ SVFDAVASGLAHTQALLDEFDTIAHRLADAPEGAEHDALLARMNTLQSALDTADAWNWRTRVATTLAQIGLDGANRVEAL SGGMKKRVALARALVLQPDVLLLDEPTNHLDFEGIRWLEELLISQRSSVLFITHDRAFLDRVATRIVELDRGRLLSYPGN FSAYQTRKAQQLEVERVENEKFDKLLAQEEVWIRKGVEARRTRSVGRIARLVQMRAEREERRSTQGNVRLDVAQGEKSGK IVAELTDVTVRYDGRTYIDRFTATVMRGDKIGLIGPNGVGKTTMLKLILGELTPDEGKVRTGTNLQVAYFDQMRAQLDLD RSLADTISPGSEWVEIGGAKKHVMSYLGDFLFAPERARSPVRSLSGGERNRLLLARLFARPANVLVLDEPTNDLDIPTLE LLEELLADYDGTVLLVSHDRAFLDNVVTSVIASEGDGRWREYVGGFSDWQVQRTRADELAQQDAARRTPREAAPKDEAGK GAAAGAGAPAAGRNAQRTVKLSFNEQRELDALPERIAALEAEQKAINEKLEDGSIFARDAKEGTRLTERFAALDDELLAA LERWEELEAKRKPS
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=536, Percent_Identity=32.2761194029851, Blast_Score=224, Evalue=2e-58, Organism=Homo sapiens, GI10947137, Length=527, Percent_Identity=30.1707779886148, Blast_Score=196, Evalue=7e-50, Organism=Homo sapiens, GI27881506, Length=527, Percent_Identity=30.1707779886148, Blast_Score=196, Evalue=8e-50, Organism=Homo sapiens, GI69354671, Length=540, Percent_Identity=30.1851851851852, Blast_Score=182, Evalue=7e-46, Organism=Homo sapiens, GI10947135, Length=540, Percent_Identity=30.1851851851852, Blast_Score=182, Evalue=7e-46, Organism=Escherichia coli, GI1787182, Length=650, Percent_Identity=46.1538461538462, Blast_Score=541, Evalue=1e-155, Organism=Escherichia coli, GI2367384, Length=520, Percent_Identity=34.6153846153846, Blast_Score=318, Evalue=5e-88, Organism=Escherichia coli, GI1787041, Length=529, Percent_Identity=31.0018903591682, Blast_Score=252, Evalue=6e-68, Organism=Escherichia coli, GI1789751, Length=671, Percent_Identity=30.2533532041729, Blast_Score=252, Evalue=6e-68, Organism=Escherichia coli, GI1788165, Length=189, Percent_Identity=35.4497354497354, Blast_Score=95, Evalue=1e-20, Organism=Escherichia coli, GI1789891, Length=251, Percent_Identity=28.6852589641434, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1788761, Length=244, Percent_Identity=29.9180327868852, Blast_Score=81, Evalue=2e-16, Organism=Escherichia coli, GI1787792, Length=528, Percent_Identity=23.2954545454545, Blast_Score=80, Evalue=3e-16, Organism=Escherichia coli, GI1789864, Length=247, Percent_Identity=29.1497975708502, Blast_Score=79, Evalue=1e-15, Organism=Escherichia coli, GI145693107, Length=563, Percent_Identity=22.5577264653641, Blast_Score=79, Evalue=1e-15, Organism=Escherichia coli, GI1788225, Length=247, Percent_Identity=27.9352226720648, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI1789672, Length=245, Percent_Identity=25.7142857142857, Blast_Score=76, Evalue=6e-15, Organism=Escherichia coli, GI1786253, Length=216, Percent_Identity=31.4814814814815, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1789873, Length=219, Percent_Identity=32.4200913242009, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1787029, Length=237, Percent_Identity=26.1603375527426, Blast_Score=74, Evalue=4e-14, Organism=Escherichia coli, GI1787164, Length=234, Percent_Identity=29.9145299145299, Blast_Score=74, Evalue=4e-14, Organism=Escherichia coli, GI1790544, Length=269, Percent_Identity=29.7397769516729, Blast_Score=72, Evalue=8e-14, Organism=Escherichia coli, GI1786872, Length=232, Percent_Identity=27.5862068965517, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI1788506, Length=236, Percent_Identity=27.5423728813559, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI1787758, Length=183, Percent_Identity=26.2295081967213, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1790739, Length=236, Percent_Identity=28.8135593220339, Blast_Score=67, Evalue=5e-12, Organism=Escherichia coli, GI1790162, Length=249, Percent_Identity=25.3012048192771, Blast_Score=66, Evalue=6e-12, Organism=Escherichia coli, GI87081791, Length=208, Percent_Identity=26.4423076923077, Blast_Score=66, Evalue=7e-12, Organism=Escherichia coli, GI1788644, Length=134, Percent_Identity=31.3432835820896, Blast_Score=66, Evalue=7e-12, Organism=Escherichia coli, GI1786345, Length=204, Percent_Identity=32.3529411764706, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17559834, Length=537, Percent_Identity=28.6778398510242, Blast_Score=208, Evalue=7e-54, Organism=Caenorhabditis elegans, GI17553372, Length=520, Percent_Identity=32.8846153846154, Blast_Score=200, Evalue=2e-51, Organism=Caenorhabditis elegans, GI17555318, Length=530, Percent_Identity=28.6792452830189, Blast_Score=187, Evalue=1e-47, Organism=Caenorhabditis elegans, GI17511077, Length=253, Percent_Identity=29.2490118577075, Blast_Score=74, Evalue=3e-13, Organism=Caenorhabditis elegans, GI212646699, Length=227, Percent_Identity=25.9911894273128, Blast_Score=66, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6320874, Length=540, Percent_Identity=30.3703703703704, Blast_Score=219, Evalue=9e-58, Organism=Saccharomyces cerevisiae, GI6321121, Length=539, Percent_Identity=30.4267161410019, Blast_Score=195, Evalue=2e-50, Organism=Saccharomyces cerevisiae, GI6325030, Length=398, Percent_Identity=29.8994974874372, Blast_Score=157, Evalue=6e-39, Organism=Saccharomyces cerevisiae, GI6324314, Length=408, Percent_Identity=28.1862745098039, Blast_Score=132, Evalue=1e-31, Organism=Saccharomyces cerevisiae, GI6323278, Length=408, Percent_Identity=26.7156862745098, Blast_Score=126, Evalue=1e-29, Organism=Drosophila melanogaster, GI24666836, Length=538, Percent_Identity=30.6691449814126, Blast_Score=218, Evalue=1e-56, Organism=Drosophila melanogaster, GI24642252, Length=548, Percent_Identity=29.9270072992701, Blast_Score=209, Evalue=4e-54, Organism=Drosophila melanogaster, GI18859989, Length=548, Percent_Identity=29.9270072992701, Blast_Score=209, Evalue=4e-54, Organism=Drosophila melanogaster, GI24641342, Length=534, Percent_Identity=28.2771535580524, Blast_Score=194, Evalue=1e-49,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 72390; Mature: 72258
Theoretical pI: Translated: 5.03; Mature: 5.03
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLYSITGAQLAFGHVALLDHADFSLEAGERVGLIGRNGAGKSSLLKIVAELARPDDGLV CCCEECCCCHHHHHHEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCE TRQQDLVTVYVSQEPEFEPGQSVFDAVASGLAHTQALLDEFDTIAHRLADAPEGAEHDAL ECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH LARMNTLQSALDTADAWNWRTRVATTLAQIGLDGANRVEALSGGMKKRVALARALVLQPD HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHCCCC VLLLDEPTNHLDFEGIRWLEELLISQRSSVLFITHDRAFLDRVATRIVELDRGRLLSYPG EEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEECCCC NFSAYQTRKAQQLEVERVENEKFDKLLAQEEVWIRKGVEARRTRSVGRIARLVQMRAERE CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH ERRSTQGNVRLDVAQGEKSGKIVAELTDVTVRYDGRTYIDRFTATVMRGDKIGLIGPNGV HHHCCCCCEEEEEECCCCCCCEEEEEEEEEEEECCCHHHHHHHHHHHCCCEEEEECCCCC GKTTMLKLILGELTPDEGKVRTGTNLQVAYFDQMRAQLDLDRSLADTISPGSEWVEIGGA CHHHHHHHHHHHCCCCCCCEECCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCH KKHVMSYLGDFLFAPERARSPVRSLSGGERNRLLLARLFARPANVLVLDEPTNDLDIPTL HHHHHHHHHHHHCCCHHHHCHHHHCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCHH ELLEELLADYDGTVLLVSHDRAFLDNVVTSVIASEGDGRWREYVGGFSDWQVQRTRADEL HHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHH AQQDAARRTPREAAPKDEAGKGAAAGAGAPAAGRNAQRTVKLSFNEQRELDALPERIAAL HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHH EAEQKAINEKLEDGSIFARDAKEGTRLTERFAALDDELLAALERWEELEAKRKPS HHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SLYSITGAQLAFGHVALLDHADFSLEAGERVGLIGRNGAGKSSLLKIVAELARPDDGLV CCEECCCCHHHHHHEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCE TRQQDLVTVYVSQEPEFEPGQSVFDAVASGLAHTQALLDEFDTIAHRLADAPEGAEHDAL ECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH LARMNTLQSALDTADAWNWRTRVATTLAQIGLDGANRVEALSGGMKKRVALARALVLQPD HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHCCCC VLLLDEPTNHLDFEGIRWLEELLISQRSSVLFITHDRAFLDRVATRIVELDRGRLLSYPG EEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEECCCC NFSAYQTRKAQQLEVERVENEKFDKLLAQEEVWIRKGVEARRTRSVGRIARLVQMRAERE CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH ERRSTQGNVRLDVAQGEKSGKIVAELTDVTVRYDGRTYIDRFTATVMRGDKIGLIGPNGV HHHCCCCCEEEEEECCCCCCCEEEEEEEEEEEECCCHHHHHHHHHHHCCCEEEEECCCCC GKTTMLKLILGELTPDEGKVRTGTNLQVAYFDQMRAQLDLDRSLADTISPGSEWVEIGGA CHHHHHHHHHHHCCCCCCCEECCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCH KKHVMSYLGDFLFAPERARSPVRSLSGGERNRLLLARLFARPANVLVLDEPTNDLDIPTL HHHHHHHHHHHHCCCHHHHCHHHHCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCHH ELLEELLADYDGTVLLVSHDRAFLDNVVTSVIASEGDGRWREYVGGFSDWQVQRTRADEL HHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHH AQQDAARRTPREAAPKDEAGKGAAAGAGAPAAGRNAQRTVKLSFNEQRELDALPERIAAL HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHH EAEQKAINEKLEDGSIFARDAKEGTRLTERFAALDDELLAALERWEELEAKRKPS HHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Endonuclease; Excision [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]