Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
---|---|
Accession | NC_012724 |
Length | 3,906,507 |
Click here to switch to the map view.
The map label for this gene is 238028236
Identifier: 238028236
GI number: 238028236
Start: 3063777
End: 3064979
Strand: Direct
Name: 238028236
Synonym: bglu_1g26900
Alternate gene names: NA
Gene position: 3063777-3064979 (Clockwise)
Preceding gene: 238028235
Following gene: 238028242
Centisome position: 78.43
GC content: 74.4
Gene sequence:
>1203_bases ATGAATACGACAACCGATGGCGCCGTCGCGGGCGGCGAGCAGGAATCCCTGTGGTCGCTGTTCCGGACGGTCGCGGGCGT GTCCGCCGTGTCATGGGGCGGCCTCGCGATGATGGCGCAGCTCGAGCGCCATTACGTCGAGCGCACCGGGCGGCTCGACG CCGCTGCCTATGCCGACCTGGTGGCGCTCGCCTGGATCGTGCCCGGTCCGGTCGGCTGCAACGTCGCGATCCAGCTCGGC CAGGCGCTGCGCGGGCGCGTCGGCGCCTGGCTCGCCGGCATCGCGAGCGTGCTGCCGTTCTTCGTGCCGATGACGCTGTT CGCGATCTTCTATCGCGCGCCGGCGGTGCGCTCGCTCGCGGCGCCGATGCTGCTGCACGCGTTCGGCATGGTGCTGGCCG CGTTGATCGGGGTGACCTGGCGGCGCCAGATCCGCACGCTCGCGGCAGGGCCGGCCGAGCGGCTGGTGGCCGCGGCCGCC ACGGCGCTGCTGATGGCGGCGCACCGGCCGAGCGCGTTCGTCGCGATCCTGGCGGGCGCGTTCGCCTCGGGCTGGTTCAG CAGCGCGGCGCGCGGCGCGGTGCCGAGGCCGCGGCTCGCCTGCGCCGAGCGCCTGGTACTGCTCGCGCTGGCGCCGCTGG TGGTGCTGTTCGCGCTGCCGCTGCCGGACGCCTGCGAGGCGAGGCTGCTGTGGCTGCGGCTCGCCGGCGCCGGCATGACG CTGTTCGGCGGCGGCTTCTCGGCGCTGCCGGTGCTGAAGGCGCTGCTCGTCACGCCGGCCACCGGCCTGTCCGACAGCGA TTTCACGCTGGCCTTCGCGCTCTCGCCGGTCTCGCCCGGGCCGCTGCTGAACGTCGTGCCGTTCCTGGGCTACCTGATGG ACGGCTGGCGCGGCGCGCTGCTCGGCACGGCCGCGCTGTTCATCCCGTCCGGCTGCCTGGTGGTGCTCGCACAGCGGCAC CTGCACCGGCTGCGCCGCAGCCCGCGTTTCGAGCACGGCATGCGGATGCTGCGCGCGGCCACCACCGCGTTCCTCGCGAT CGCCGTGGTGCGAATCCTGAGCGGCACGCCGGCCGCGCCGGGCTATTGGGCGATCGGCGCGCTGGCCTGTTTCGCGTTCG CGCGCTTCGGGGTGCCGGTCTACGCGGTGTACGGGACCGTGGCGGCCGGCTGCGGGGGATGGCTGCTGCTCGCGGCGCAT TGA
Upstream 100 bases:
>100_bases CCCGGCGCGGGCCGGCCCCGGCACGGAGCCGGCCCGTGGCCAATCAAGGCGGAATCGACGCCGCGCTGGCCGGCGCACGT CGCTGAGAGCTCACAACAAT
Downstream 100 bases:
>100_bases GCGCGGCGCGGCCCCGCGCGATGCCGCGCTACGGGGCAAGCCGGCCAACCGTGCCGGATGCCGCCGGCACCGCGCGCGGC GCGCATCAGAAGCCGCGCGA
Product: chromate transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 400; Mature: 400
Protein sequence:
>400_residues MNTTTDGAVAGGEQESLWSLFRTVAGVSAVSWGGLAMMAQLERHYVERTGRLDAAAYADLVALAWIVPGPVGCNVAIQLG QALRGRVGAWLAGIASVLPFFVPMTLFAIFYRAPAVRSLAAPMLLHAFGMVLAALIGVTWRRQIRTLAAGPAERLVAAAA TALLMAAHRPSAFVAILAGAFASGWFSSAARGAVPRPRLACAERLVLLALAPLVVLFALPLPDACEARLLWLRLAGAGMT LFGGGFSALPVLKALLVTPATGLSDSDFTLAFALSPVSPGPLLNVVPFLGYLMDGWRGALLGTAALFIPSGCLVVLAQRH LHRLRRSPRFEHGMRMLRAATTAFLAIAVVRILSGTPAAPGYWAIGALACFAFARFGVPVYAVYGTVAAGCGGWLLLAAH
Sequences:
>Translated_400_residues MNTTTDGAVAGGEQESLWSLFRTVAGVSAVSWGGLAMMAQLERHYVERTGRLDAAAYADLVALAWIVPGPVGCNVAIQLG QALRGRVGAWLAGIASVLPFFVPMTLFAIFYRAPAVRSLAAPMLLHAFGMVLAALIGVTWRRQIRTLAAGPAERLVAAAA TALLMAAHRPSAFVAILAGAFASGWFSSAARGAVPRPRLACAERLVLLALAPLVVLFALPLPDACEARLLWLRLAGAGMT LFGGGFSALPVLKALLVTPATGLSDSDFTLAFALSPVSPGPLLNVVPFLGYLMDGWRGALLGTAALFIPSGCLVVLAQRH LHRLRRSPRFEHGMRMLRAATTAFLAIAVVRILSGTPAAPGYWAIGALACFAFARFGVPVYAVYGTVAAGCGGWLLLAAH >Mature_400_residues MNTTTDGAVAGGEQESLWSLFRTVAGVSAVSWGGLAMMAQLERHYVERTGRLDAAAYADLVALAWIVPGPVGCNVAIQLG QALRGRVGAWLAGIASVLPFFVPMTLFAIFYRAPAVRSLAAPMLLHAFGMVLAALIGVTWRRQIRTLAAGPAERLVAAAA TALLMAAHRPSAFVAILAGAFASGWFSSAARGAVPRPRLACAERLVLLALAPLVVLFALPLPDACEARLLWLRLAGAGMT LFGGGFSALPVLKALLVTPATGLSDSDFTLAFALSPVSPGPLLNVVPFLGYLMDGWRGALLGTAALFIPSGCLVVLAQRH LHRLRRSPRFEHGMRMLRAATTAFLAIAVVRILSGTPAAPGYWAIGALACFAFARFGVPVYAVYGTVAAGCGGWLLLAAH
Specific function: Unknown
COG id: COG2059
COG function: function code P; Chromate transport protein ChrA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the chromate ion transporter (CHR) (TC 2.A.51) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003370 - InterPro: IPR014047 [H]
Pfam domain/function: PF02417 Chromate_transp [H]
EC number: NA
Molecular weight: Translated: 41805; Mature: 41805
Theoretical pI: Translated: 11.07; Mature: 11.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTTTDGAVAGGEQESLWSLFRTVAGVSAVSWGGLAMMAQLERHYVERTGRLDAAAYADL CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH VALAWIVPGPVGCNVAIQLGQALRGRVGAWLAGIASVLPFFVPMTLFAIFYRAPAVRSLA HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH APMLLHAFGMVLAALIGVTWRRQIRTLAAGPAERLVAAAATALLMAAHRPSAFVAILAGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH FASGWFSSAARGAVPRPRLACAERLVLLALAPLVVLFALPLPDACEARLLWLRLAGAGMT HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCE LFGGGFSALPVLKALLVTPATGLSDSDFTLAFALSPVSPGPLLNVVPFLGYLMDGWRGAL EECCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH LGTAALFIPSGCLVVLAQRHLHRLRRSPRFEHGMRMLRAATTAFLAIAVVRILSGTPAAP HHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC GYWAIGALACFAFARFGVPVYAVYGTVAAGCGGWLLLAAH CHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEECC >Mature Secondary Structure MNTTTDGAVAGGEQESLWSLFRTVAGVSAVSWGGLAMMAQLERHYVERTGRLDAAAYADL CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH VALAWIVPGPVGCNVAIQLGQALRGRVGAWLAGIASVLPFFVPMTLFAIFYRAPAVRSLA HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH APMLLHAFGMVLAALIGVTWRRQIRTLAAGPAERLVAAAATALLMAAHRPSAFVAILAGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH FASGWFSSAARGAVPRPRLACAERLVLLALAPLVVLFALPLPDACEARLLWLRLAGAGMT HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCE LFGGGFSALPVLKALLVTPATGLSDSDFTLAFALSPVSPGPLLNVVPFLGYLMDGWRGAL EECCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH LGTAALFIPSGCLVVLAQRHLHRLRRSPRFEHGMRMLRAATTAFLAIAVVRILSGTPAAP HHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC GYWAIGALACFAFARFGVPVYAVYGTVAAGCGGWLLLAAH CHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]